Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Sabra13G0028900 Salix brachista HOM05D004923 ORTHO05D005940 7.6e-235 817.4 626 100.0
Potri.013G028600 Populus trichocarpa HOM05D004923 ORTHO05D005940 1.2e-176 624.0 627 79.3
Sabra05G0039600 Salix brachista HOM05D004923 ORTHO05D005940 1.5e-137 494.2 592 64.9
Potri.005G040500 Populus trichocarpa HOM05D004923 ORTHO05D005940 1.8e-95 354.4 627 53.4
Manes.09G161700 Manihot esculenta HOM05D004923 ORTHO05D005940 4.8e-88 329.7 634 53.5
Ciclev10000602m.g Citrus clementina HOM05D004923 ORTHO05D005940 2.5e-76 290.8 635 44.9
QL03p002854 Quercus lobata HOM05D004923 ORTHO05D005940 1.3e-69 268.5 636 50.8
Cfa006523 Carpinus fangiana HOM05D004923 ORTHO05D005940 1.2e-67 261.9 639 39.4
QL03p003582 Quercus lobata HOM05D004923 ORTHO05D005940 1.1e-63 248.8 636 49.4
CiPaw.07G012700 Carya illinoinensis HOM05D004923 ORTHO05D005940 1.4e-63 248.4 637 38.8
Haze_04263 Corylus avellana HOM05D004923 ORTHO05D005940 1.9e-60 238.0 602 35.4
TWI56G0946 Tripterygium wilfordii HOM05D004923 ORTHO05D005940 9.2e-55 219.2 630 39.2
Gohir.A08G212800 Gossypium hirsutum HOM05D004923 ORTHO05D005940 3.0e-53 214.2 648 37.7
Duzib177G0588 Durio zibethinus HOM05D004923 ORTHO05D005940 8.9e-50 202.6 671 43.8
Gohir.A11G260600 Gossypium hirsutum HOM05D004923 ORTHO05D005940 1.5e-49 201.8 639 40.4
Gorai.004G244000 Gossypium raimondii HOM05D004923 ORTHO05D005940 8.3e-48 196.1 662 39.6
Gohir.D08G229800 Gossypium hirsutum HOM05D004923 ORTHO05D005940 4.1e-47 193.7 662 39.4
Thecc.05G297900 Theobroma cacao HOM05D004923 ORTHO05D005940 2.0e-46 191.4 668 38.3
AT5G27330 Arabidopsis thaliana HOM05D004923 ORTHO05D005940 1.3e-45 188.7 635 41.7
CiPaw.08G168100 Carya illinoinensis HOM05D004923 ORTHO05D005940 3.0e-45 187.6 252 47.2
CSS0000935 Camellia sinensis var. sinensis HOM05D004923 ORTHO05D005940 4.7e-43 180.3 628 32.5
Atru.chr2.532 Acer truncatum HOM05D004923 ORTHO05D005940 8.1e-43 179.5 651 45.6
Prupe.6G332700 Prunus persica HOM05D004923 ORTHO05D005940 8.1e-43 179.5 644 36.0
Gohir.D11G270900 Gossypium hirsutum HOM05D004923 ORTHO05D005940 1.4e-42 178.7 665 45.3
Gorai.007G291400 Gossypium raimondii HOM05D004923 ORTHO05D005940 8.9e-42 176.0 665 45.4
Eucgr.B02029 Eucalyptus grandis HOM05D004923 ORTHO05D005940 1.5e-41 175.3 642 36.4
ClCG02G016160 Citrullus lanatus HOM05D004923 ORTHO05D005940 1.3e-40 172.2 627 26.0
Hma1.2p1_0702F.1_g206060 Hydrangea macrophylla HOM05D004923 ORTHO05D005940 2.2e-40 171.4 621 26.6
CARHR185930 Cardamine hirsuta HOM05D004923 ORTHO05D005940 8.3e-40 169.5 642 35.7
Thhalv10003823m.g Eutrema salsugineum HOM05D004923 ORTHO05D005940 2.4e-39 167.9 635 46.9
Manes.08G124600 Manihot esculenta HOM05D004923 ORTHO05D005940 3.2e-39 167.5 860 31.5
Sopen01g053000 Solanum pennellii HOM05D004923 ORTHO05D005940 2.7e-38 164.5 660 26.1
Cc02_g32730 Coffea canephora HOM05D004923 ORTHO05D005940 6.0e-38 163.3 646 34.4
TAR362G1085 Trochodendron aralioides HOM05D004923 ORTHO05D005940 1.0e-37 162.5 758 31.8
Sed0008414 Sechium edule HOM05D004923 ORTHO05D005940 2.3e-37 161.4 628 28.7
MELO3C004316.2 Cucumis melo HOM05D004923 ORTHO05D005940 3.0e-37 161.0 631 27.6
Sc06g0003440 Simmondsia chinensis HOM05D004923 ORTHO05D005940 5.1e-37 160.2 657 26.5
AL6G39740 Arabidopsis lyrata HOM05D004923 ORTHO05D005940 6.6e-37 159.8 635 46.3
AL3G15510 Arabidopsis lyrata HOM05D004923 ORTHO05D005940 1.9e-36 158.3 637 33.9
GSVIVG01022015001 Vitis vinifera HOM05D004923 ORTHO05D005940 7.3e-36 156.4 628 36.3
Hma1.2p1_2453F.1_g322410 Hydrangea macrophylla HOM05D004923 ORTHO05D005940 9.5e-36 156.0 621 25.9
THA.LOC104818671 Tarenaya hassleriana HOM05D004923 ORTHO05D005940 1.6e-35 155.2 634 36.6
Dinv40234 Davidia involucrata HOM05D004923 ORTHO05D005940 2.8e-35 154.5 603 26.7
Sp2g20550 Schrenkiella parvula HOM05D004923 ORTHO05D005940 3.6e-35 154.1 634 35.8
Lalb_Chr02g0148481 Lupinus albus HOM05D004923 ORTHO05D005940 1.1e-34 152.5 595 26.6
Carub.0003s0437 Capsella rubella HOM05D004923 ORTHO05D005940 2.4e-34 151.4 643 39.0
Sp3g03950 Schrenkiella parvula HOM05D004923 ORTHO05D005940 2.4e-34 151.4 635 31.5
MSTRG.12109 Avicennia marina HOM05D004923 ORTHO05D005940 4.0e-34 150.6 638 25.2
Cpa.g.sc84.119 Carica papaya HOM05D004923 ORTHO05D005940 2.0e-33 148.3 250 44.8
arahy.Tifrunner.gnm1.ann1.96LETV Arachis hypogaea HOM05D004923 ORTHO05D005940 3.4e-33 147.5 628 33.0
Solyc01g110960.4 Solanum lycopersicum HOM05D004923 ORTHO05D005940 3.8e-32 144.1 598 25.8
Carub.0006s2521 Capsella rubella HOM05D004923 ORTHO05D005940 8.4e-32 142.9 636 35.1
FAN02G0211 Fragaria x ananassa HOM05D004923 ORTHO05D005940 8.4e-32 142.9 631 34.7
RcHm_v2.0_Chr3g0453461 Rosa chinensis HOM05D004923 ORTHO05D005940 3.2e-31 141.0 632 38.4
SGA_v2.0_scaffold104G30165 Striga asiatica HOM05D004923 ORTHO05D005940 3.2e-31 141.0 631 24.9
CANSAT54G1324 Cannabis sativa HOM05D004923 ORTHO05D005940 5.4e-31 140.2 756 34.5
FvH4_6g04961 Fragaria vesca HOM05D004923 ORTHO05D005940 3.0e-29 134.4 631 35.2
BcaNung04359 Brassica carinata HOM05D004923 ORTHO05D005940 5.1e-29 133.7 639 29.7
COL.COLO4_13559 Corchorus olitorius HOM05D004923 ORTHO05D005940 1.1e-28 132.5 640 34.2
arahy.Tifrunner.gnm1.ann1.S9CKM7 Arachis hypogaea HOM05D004923 ORTHO05D005940 1.5e-28 132.1 590 36.3
Lj9P678T27 Lonicera japonica HOM05D004923 ORTHO05D005940 1.5e-28 132.1 250 38.0
FAN14G0846 Fragaria x ananassa HOM05D004923 ORTHO05D005940 2.5e-28 131.3 631 26.8
Actinidia19810 Actinidia chinensis HOM05D004923 ORTHO05D005940 1.2e-27 129.0 632 28.2
FAN09G1938 Fragaria x ananassa HOM05D004923 ORTHO05D005940 1.2e-27 129.0 646 33.1
FAN05G2617 Fragaria x ananassa HOM05D004923 ORTHO05D005940 1.6e-27 128.6 632 35.3
THA.LOC104821702 Tarenaya hassleriana HOM05D004923 ORTHO05D005940 1.1e-26 125.9 632 34.3
FAN05G5260 Fragaria x ananassa HOM05D004923 ORTHO05D005940 2.4e-26 124.8 632 35.1
MD12G1227100 Malus domestica HOM05D004923 ORTHO05D005940 6.9e-26 123.2 170 43.5
MD04G1212300 Malus domestica HOM05D004923 ORTHO05D005940 1.2e-25 122.5 628 32.6
AUR62000899 Chenopodium quinoa HOM05D004923 ORTHO05D005940 2.0e-25 121.7 258 32.2
Rhsim05G0146200 Rhododendron simsii HOM05D004923 ORTHO05D005940 2.6e-25 121.3 626 30.2
BcaNung02477 Brassica carinata HOM05D004923 ORTHO05D005940 9.9e-25 119.4 636 32.9
AT3G05130 Arabidopsis thaliana HOM05D004923 ORTHO05D005940 2.2e-24 118.2 636 29.2
C07p40590 Brassica napus HOM05D004923 ORTHO05D005940 2.2e-24 118.2 636 29.1
Lj5g0013750 Lotus japonicus HOM05D004923 ORTHO05D005940 3.8e-24 117.5 706 27.6
Oeu019603.1 Olea europaea HOM05D004923 ORTHO05D005940 4.9e-24 117.1 234 36.3
arahy.Tifrunner.gnm1.ann1.VPW6I2 Arachis hypogaea HOM05D004923 ORTHO05D005940 6.4e-24 116.7 647 28.0
CsaV3_2G004820 Cucumis sativus L. HOM05D004923 ORTHO05D005940 8.4e-24 116.3 591 27.2
Oeu020434.1 Olea europaea HOM05D004923 ORTHO05D005940 9.3e-23 112.8 637 31.2
PGSC0003DMG400001646 Solanum tuberosum HOM05D004923 ORTHO05D005940 3.5e-22 110.9 657 27.5
AUR62005075 Chenopodium quinoa HOM05D004923 ORTHO05D005940 6.0e-22 110.2 234 32.1
MBI18_g16961_MAGBIO Magnolia biondii HOM05D004923 ORTHO05D005940 1.0e-21 109.4 212 36.3
PGR083G0910 Punica granatum HOM05D004923 ORTHO05D005940 1.3e-21 109.0 591 27.4
Phvul.007G183300 Phaseolus vulgaris HOM05D004923 ORTHO05D005940 3.9e-21 107.5 226 37.2
BraA05t23008Z Brassica rapa HOM05D004923 ORTHO05D005940 5.1e-21 107.1 248 33.5
Ah.04g159880 Amaranthus hybridus HOM05D004923 ORTHO05D005940 8.7e-21 106.3 647 28.9
Glyma.20G230700 Glycine max HOM05D004923 ORTHO05D005940 8.7e-21 106.3 219 37.4
C05p62100 Brassica napus HOM05D004923 ORTHO05D005940 2.5e-20 104.8 635 25.0
BolC5t34868H Brassica oleracea HOM05D004923 ORTHO05D005940 2.5e-20 104.8 635 25.0
Glyma.10G157900 Glycine max HOM05D004923 ORTHO05D005940 7.3e-20 103.2 637 29.5
SalBow6G2889 Salvia bowleyana HOM05D004923 ORTHO05D005940 7.3e-20 103.2 636 22.5
BolC7t44596H Brassica oleracea HOM05D004923 ORTHO05D005940 4.0e-18 97.4 216 36.6
Ah.04g159900 Amaranthus hybridus HOM05D004923 ORTHO05D005940 5.3e-18 97.1 254 28.7
A06p37630 Brassica napus HOM05D004923 ORTHO05D005940 3.4e-17 94.4 638 43.9
Aa31LG11G9060 Aethionema arabicum HOM05D004923 ORTHO05D005940 4.5e-17 94.0 201 33.8
CAN.G1329.24 Capsicum annuum HOM05D004923 ORTHO05D005940 4.9e-16 90.5 243 32.5
CARHR079450 Cardamine hirsuta HOM05D004923 ORTHO05D005940 4.9e-16 90.5 247 28.7
DCAR_029454 Daucus carota HOM05D004923 ORTHO05D005940 6.4e-16 90.1 638 39.5
ECA246G1289 Erigeron canadensis HOM05D004923 ORTHO05D005940 1.4e-15 89.0 251 32.3
A05p42440 Brassica napus HOM05D004923 ORTHO05D005940 4.2e-15 87.4 630 35.6
BraA06t26683Z Brassica rapa HOM05D004923 ORTHO05D005940 3.5e-14 84.3 190 37.9
ECA233G0604 Erigeron canadensis HOM05D004923 ORTHO05D005940 7.9e-14 83.2 212 31.6
AL3G15330 Arabidopsis lyrata HOM05D004923 ORTHO05D005940 3.0e-13 81.3 216 31.0
Migut.A01112 Erythranthe guttata HOM05D004923 ORTHO05D005940 5.1e-13 80.5 638 30.1
PSO151G0007 Papaver somniferum HOM05D004923 ORTHO05D005940 8.7e-13 79.7 227 31.3
PSO151G0141 Papaver somniferum HOM05D004923 ORTHO05D005940 8.7e-13 79.7 227 31.3
Atru.chr5.1952 Acer truncatum HOM05D000107 ORTHO05D000062 1.9e-12 78.6 152 33.6
HanXRQChr05g0158391 Helianthus annuus HOM05D004923 ORTHO05D005940 3.3e-12 77.8 638 22.3
Nn4g26097 Nelumbo nucifera HOM05D004923 ORTHO05D005940 3.3e-12 77.8 759 23.8
PSO170G6876 Papaver somniferum HOM05D004923 ORTHO05D005940 7.4e-12 76.6 148 38.5
VMungo0720G2495 Vigna mungo HOM05D004923 ORTHO05D005940 7.4e-12 76.6 252 30.6
COL.COLO4_23513 Corchorus olitorius HOM05D004923 ORTHO05D005940 1.3e-11 75.9 127 41.7
Nitab4.5_0008768g0010 Nicotiana tabacum HOM05D004923 ORTHO05D005940 1.3e-11 75.9 171 32.7
Nn4g26098 Nelumbo nucifera HOM05D004923 ORTHO05D005940 8.1e-11 73.2 759 30.4
Lj8C55T15 Lonicera japonica HOM05D004923 ORTHO05D005940 1.1e-10 72.8 199 28.6
Psat6g148400 Pisum sativum HOM05D004923 ORTHO05D005940 1.1e-10 72.8 159 39.6
SHI18226 Sapria himalayana HOM05D004923 ORTHO05D005940 1.1e-10 72.8 139 37.4
HanXRQChr15g0493471 Helianthus annuus HOM05D004923 ORTHO05D005940 1.8e-10 72.0 615 31.4
Nitab4.5_0000003g0420 Nicotiana tabacum HOM05D004923 ORTHO05D005940 1.8e-10 72.0 171 33.9
CAN.G65.101 Capsicum annuum HOM05D004923 ORTHO05D005940 9.0e-10 69.7 151 33.1
Aqoxy2G03170 Aquilegia oxysepala HOM05D004923 ORTHO05D005940 1.2e-09 69.3 253 28.1
TPR.G2744 Trifolium pratense HOM05D004923 ORTHO05D005940 1.2e-09 69.3 167 37.1
Ca_10079_v3 Cicer arietinum L. HOM05D004923 ORTHO05D005940 2.0e-09 68.6 711 28.6
PSO302G0039 Papaver somniferum HOM05D004923 ORTHO05D005940 3.4e-09 67.8 137 38.0
Peaxi162Scf00016g10236 Petunia axillaris HOM05D004923 ORTHO05D005940 3.4e-09 67.8 194 33.0
QL01p001837 Quercus lobata HOM05D004923 ORTHO05D005940 3.4e-09 67.8 93 45.2
PSO151G0084 Papaver somniferum HOM05D004923 ORTHO05D005940 7.6e-09 66.6 252 29.4
BcaC05g29999 Brassica carinata HOM05D004923 ORTHO05D005940 2.9e-08 64.7 195 29.7
Medtr1g082215 Medicago truncatula HOM05D004923 ORTHO05D005940 3.8e-08 64.3 706 30.3
unitig_8.g3020 Utricularia gibba HOM05D004923 ORTHO05D005940 1.1e-07 62.8 250 25.2
Peaxi162Scf00413g00516 Petunia axillaris HOM05D004923 ORTHO05D005940 2.4e-07 61.6 132 31.1
CDE09G0746 Ceratophyllum demersum HOM05D056443 ORTHO05D005940 4.2e-07 60.8 264 28.0
BcaC01g00704 Brassica carinata HOM05D004923 ORTHO05D032366 2.1e-06 58.5 232 29.3
BolC3t20618H Brassica oleracea HOM05D004923 ORTHO05D032366 2.1e-06 58.5 232 29.3


User provided reference genes

Program Settings