Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Sabra13G0026700 Salix brachista HOM05D004389 ORTHO05D005457 4.9e-114 414.5 207 100.0
Potri.013G025600 Populus trichocarpa HOM05D004389 ORTHO05D005457 4.3e-86 321.6 207 80.7
Potri.005G036500 Populus trichocarpa HOM05D004389 ORTHO05D005457 1.1e-81 307.0 207 77.3
Sabra05G0037000 Salix brachista HOM05D004389 ORTHO05D005457 3.6e-80 302.0 203 77.8
CiPaw.07G015300 Carya illinoinensis HOM05D004389 ORTHO05D005457 2.5e-73 279.3 206 72.3
Haze_23899 Corylus avellana HOM05D004389 ORTHO05D005457 3.2e-73 278.9 206 71.8
QL03p004595 Quercus lobata HOM05D004389 ORTHO05D005457 9.4e-73 277.3 206 71.4
Haze_04228 Corylus avellana HOM05D004389 ORTHO05D005457 1.2e-72 276.9 207 72.0
Thecc.05G307100 Theobroma cacao HOM05D004389 ORTHO05D005457 2.1e-72 276.2 207 71.0
COL.COLO4_29544 Corchorus olitorius HOM05D004389 ORTHO05D005457 2.7e-72 275.8 207 70.5
PGR031G3032 Punica granatum HOM05D004389 ORTHO05D005457 2.7e-72 275.8 206 71.4
Cfa006553 Carpinus fangiana HOM05D004389 ORTHO05D003318 8.0e-72 274.2 201 72.6
Manes.09G078200 Manihot esculenta HOM05D004389 ORTHO05D005457 8.0e-72 274.2 207 70.5
Ciclev10018002m.g Citrus clementina HOM05D004389 ORTHO05D005457 1.8e-71 273.1 207 70.5
Duzib177G0146 Durio zibethinus HOM05D004389 ORTHO05D005457 2.3e-71 272.7 207 70.0
Lj7A473T46 Lonicera japonica HOM05D004389 ORTHO05D005457 2.3e-71 272.7 208 69.7
CANSAT21G2311 Cannabis sativa HOM05D004389 ORTHO05D005457 8.8e-71 270.8 206 69.4
Actinidia05713 Actinidia chinensis HOM05D004389 ORTHO05D005457 1.1e-70 270.4 207 70.0
COL.COLO4_19842 Corchorus olitorius HOM05D004389 ORTHO05D005457 2.6e-70 269.2 207 69.6
Glyma.06G240600 Glycine max HOM05D004389 ORTHO05D005457 3.3e-70 268.9 205 71.2
vmacro19638 Vaccinium macrocarpon HOM05D004389 ORTHO05D005457 3.3e-70 268.9 207 69.1
Sc16g0008410 Simmondsia chinensis HOM05D004389 ORTHO05D005457 4.4e-70 268.5 202 70.8
EL10Ac4g09330 Beta vulgaris HOM05D004389 ORTHO05D005457 5.7e-70 268.1 205 67.8
Dinv23968 Davidia involucrata HOM05D004389 ORTHO05D005457 9.7e-70 267.3 207 68.6
Hma1.2p1_0666F.1_g199560 Hydrangea macrophylla HOM05D004389 ORTHO05D005457 9.7e-70 267.3 207 68.6
Hma1.2p1_1362F.1_g278175 Hydrangea macrophylla HOM05D004389 ORTHO05D005457 9.7e-70 267.3 207 68.6
Medtr3g115100 Medicago truncatula HOM05D004389 ORTHO05D005457 9.7e-70 267.3 207 69.1
Glyma.05G086900 Glycine max HOM05D004389 ORTHO05D005457 1.3e-69 266.9 196 70.4
LjContig00312_ERROPOS870357g0027537 Lotus japonicus HOM05D004389 ORTHO05D005457 1.3e-69 266.9 203 69.5
vmacro08924 Vaccinium macrocarpon HOM05D004389 ORTHO05D005457 1.3e-69 266.9 229 65.1
Eucgr.H04472 Eucalyptus grandis HOM05D004389 ORTHO05D005457 1.7e-69 266.5 207 68.6
TAR383G0075 Trochodendron aralioides HOM05D004389 ORTHO05D005457 1.7e-69 266.5 208 69.2
Gorai.004G242800 Gossypium raimondii HOM05D004389 ORTHO05D005457 3.7e-69 265.4 206 68.4
GSVIVG01006266001 Vitis vinifera HOM05D004389 ORTHO05D005457 4.8e-69 265.0 207 68.6
CANSAT21G1920 Cannabis sativa HOM05D004389 ORTHO05D005457 1.1e-68 263.8 206 68.0
TPR.G33525 Trifolium pratense HOM05D004389 ORTHO05D005457 1.1e-68 263.8 207 69.1
Gohir.D08G228501 Gossypium hirsutum HOM05D004389 ORTHO05D005457 1.8e-68 263.1 206 68.0
TAR626G0408 Trochodendron aralioides HOM05D004389 ORTHO05D005457 1.8e-68 263.1 207 68.6
Gohir.A08G211800 Gossypium hirsutum HOM05D004389 ORTHO05D005457 3.1e-68 262.3 206 68.0
Nn8g41138 Nelumbo nucifera HOM05D004389 ORTHO05D005457 5.3e-68 261.5 202 69.3
MBI16_g00840_MAGBIO Magnolia biondii HOM05D004389 ORTHO05D005457 9.1e-68 260.8 207 65.2
Nitab4.5_0002329g0100 Nicotiana tabacum HOM05D004389 ORTHO05D005457 9.1e-68 260.8 207 67.1
Lj1g0012007 Lotus japonicus HOM05D004389 ORTHO05D005457 1.2e-67 260.4 199 69.3
TWI73G0431 Tripterygium wilfordii HOM05D004389 ORTHO05D005457 1.2e-67 260.4 205 66.8
Ah.04g159790 Amaranthus hybridus HOM05D004389 ORTHO05D005457 2.6e-67 259.2 207 67.1
PSO782G4098 Papaver somniferum HOM05D004389 ORTHO05D005457 2.6e-67 259.2 206 65.5
Duzib128G0997 Durio zibethinus HOM05D004389 ORTHO05D005457 3.5e-67 258.8 207 67.1
arahy.Tifrunner.gnm1.ann1.95MSG7 Arachis hypogaea HOM05D004389 ORTHO05D005457 4.5e-67 258.5 207 65.7
PGSC0003DMG400030976 Solanum tuberosum HOM05D004389 ORTHO05D005457 5.9e-67 258.1 207 67.6
Atru.chr2.467 Acer truncatum HOM05D004389 ORTHO05D005457 7.7e-67 257.7 207 67.6
Ciclev10002655m.g Citrus clementina HOM05D004389 ORTHO05D005457 7.7e-67 257.7 203 67.0
CsaV3_1G039140 Cucumis sativus L. HOM05D004389 ORTHO05D005457 7.7e-67 257.7 207 67.1
ClCG03G016830 Citrullus lanatus HOM05D004389 ORTHO05D005457 1.0e-66 257.3 195 69.7
PSO063G2909 Papaver somniferum HOM05D004389 ORTHO05D005457 1.0e-66 257.3 202 67.3
Cc02_g33710 Coffea canephora HOM05D004389 ORTHO05D005457 1.7e-66 256.5 207 65.7
Nitab4.5_0002659g0010 Nicotiana tabacum HOM05D004389 ORTHO05D005457 1.7e-66 256.5 197 68.5
Prupe.6G329200 Prunus persica HOM05D004389 ORTHO05D005457 1.7e-66 256.5 207 66.2
Rhsim05G0143800 Rhododendron simsii HOM05D004389 ORTHO05D005457 1.7e-66 256.5 207 67.1
BcaNung00158 Brassica carinata HOM05D004389 ORTHO05D005457 2.9e-66 255.8 196 67.3
CSS0010710 Camellia sinensis var. sinensis HOM05D004389 ORTHO05D005457 3.8e-66 255.4 207 67.1
Aqoxy7G01925 Aquilegia oxysepala HOM05D004389 ORTHO05D005457 5.0e-66 255.0 206 66.0
DCAR_008416 Daucus carota HOM05D004389 ORTHO05D005457 5.0e-66 255.0 205 64.9
FAN18G1342 Fragaria x ananassa HOM05D004389 ORTHO05D005457 5.0e-66 255.0 207 66.7
AUR62005084 Chenopodium quinoa HOM05D004389 ORTHO05D005457 6.5e-66 254.6 204 65.2
Aa31sc17G40 Aethionema arabicum HOM05D004389 ORTHO05D005457 8.5e-66 254.2 203 65.0
A01p20570 Brassica napus HOM05D004389 ORTHO05D005457 8.5e-66 254.2 202 64.9
AUR62006921 Chenopodium quinoa HOM05D004389 ORTHO05D005457 8.5e-66 254.2 205 64.9
ECA236G1487 Erigeron canadensis HOM05D004389 ORTHO05D005457 8.5e-66 254.2 205 64.4
MD04G1208300 Malus domestica HOM05D004389 ORTHO05D005457 8.5e-66 254.2 207 65.7
Phvul.007G101500 Phaseolus vulgaris HOM05D004389 ORTHO05D005457 8.5e-66 254.2 198 69.2
MELO3C015339.2 Cucumis melo HOM05D004389 ORTHO05D005457 1.1e-65 253.8 207 66.7
Medtr3g096610 Medicago truncatula HOM05D004389 ORTHO05D005457 1.1e-65 253.8 199 67.8
Hund07052 Selenicereus undatus HOM05D004389 ORTHO05D005457 1.1e-65 253.8 212 66.0
Nitab4.5_0000401g0080 Nicotiana tabacum HOM05D004389 ORTHO05D005457 1.9e-65 253.1 207 65.7
Sed0018697 Sechium edule HOM05D004389 ORTHO05D005457 1.9e-65 253.1 201 66.2
Sopen12g004700 Solanum pennellii HOM05D004389 ORTHO05D005457 1.9e-65 253.1 207 67.1
BcaC09g50404 Brassica carinata HOM05D004389 ORTHO05D005457 2.5e-65 252.7 202 63.9
FvH4_6g05471 Fragaria vesca HOM05D004389 ORTHO05D005457 2.5e-65 252.7 207 65.7
Solyc12g009810.3 Solanum lycopersicum HOM05D004389 ORTHO05D005457 3.2e-65 252.3 206 66.5
FAN05G0231 Fragaria x ananassa HOM05D004389 ORTHO05D005457 4.2e-65 251.9 207 65.7
FAN05G0672 Fragaria x ananassa HOM05D004389 ORTHO05D005457 4.2e-65 251.9 207 65.7
RcHm_v2.0_Chr3g0454251 Rosa chinensis HOM05D004389 ORTHO05D005457 4.2e-65 251.9 207 65.7
BcaB03g14176 Brassica carinata HOM05D004389 ORTHO05D005457 5.5e-65 251.5 196 65.8
BolC1t02532H Brassica oleracea HOM05D004389 ORTHO05D005457 5.5e-65 251.5 202 63.4
Lj9C683G9 Lonicera japonica HOM05D004389 ORTHO05D005457 5.5e-65 251.5 204 64.7
Cpa.g.sc58.76 Carica papaya HOM05D004389 ORTHO05D005457 7.2e-65 251.1 207 64.7
Oeu045484.1 Olea europaea HOM05D004389 ORTHO05D005457 9.4e-65 250.8 202 66.3
Aa31sc17G90 Aethionema arabicum HOM05D004389 ORTHO05D005457 1.2e-64 250.4 203 64.0
Carub.0007s2468 Capsella rubella HOM05D004389 ORTHO05D005457 1.2e-64 250.4 202 63.9
PGSC0003DMG402007838 Solanum tuberosum HOM05D004389 ORTHO05D005457 1.2e-64 250.4 207 66.2
C01p25870 Brassica napus HOM05D004389 ORTHO05D005457 1.6e-64 250.0 202 63.4
Sp7g15350 Schrenkiella parvula HOM05D004389 ORTHO05D005457 1.6e-64 250.0 207 63.3
CARHR223240 Cardamine hirsuta HOM05D004389 ORTHO05D005457 2.7e-64 249.2 202 63.4
AUR62000890 Chenopodium quinoa HOM05D004389 ORTHO05D005457 2.7e-64 249.2 205 64.4
FAN14G5008 Fragaria x ananassa HOM05D004389 ORTHO05D005457 3.6e-64 248.8 207 64.3
FAN05G1752 Fragaria x ananassa HOM05D004389 ORTHO05D005457 4.7e-64 248.4 207 64.3
TWI53G0891 Tripterygium wilfordii HOM05D004389 ORTHO05D005457 4.7e-64 248.4 194 67.0
FAN05G0500 Fragaria x ananassa HOM05D004389 ORTHO05D005457 8.0e-64 247.7 207 64.3
FAN09G0842 Fragaria x ananassa HOM05D004389 ORTHO05D005457 8.0e-64 247.7 207 64.7
THA.LOC104805865 Tarenaya hassleriana HOM05D004389 ORTHO05D005457 8.0e-64 247.7 202 63.4
BraA01t01985Z Brassica rapa HOM05D004389 ORTHO05D005457 1.0e-63 247.3 202 63.9
Migut.N00707 Erythranthe guttata HOM05D004389 ORTHO05D005457 1.0e-63 247.3 207 63.8
SGA_v2.0_scaffold16G07733 Striga asiatica HOM05D004389 ORTHO05D005457 1.8e-63 246.5 207 65.2
AL7G38020 Arabidopsis lyrata HOM05D004389 ORTHO05D005457 6.7e-63 244.6 202 62.4
FvH4_5g27531 Fragaria vesca HOM05D004389 ORTHO05D005457 1.5e-62 243.4 198 66.7
HanXRQChr14g0460141 Helianthus annuus HOM05D004389 ORTHO05D005457 4.4e-62 241.9 202 63.4
CDE02G2165 Ceratophyllum demersum HOM05D004389 ORTHO05D005457 9.7e-62 240.7 206 63.1
Thhalv10026361m.g Eutrema salsugineum HOM05D004389 ORTHO05D005457 9.7e-62 240.7 207 61.4
SGA_v2.0_scaffold11G05813 Striga asiatica HOM05D004389 ORTHO05D005457 9.7e-62 240.7 207 63.8
AT4G16710 Arabidopsis thaliana HOM05D004389 ORTHO05D005457 2.2e-61 239.6 202 61.4
ATR0626G001 Amborella trichopoda HOM05D004389 ORTHO05D005457 8.2e-61 237.7 196 63.3
CSS0006579 Camellia sinensis var. sinensis HOM05D004389 ORTHO05D005457 2.4e-60 236.1 207 63.8
HPP92_010418 Vanilla planifolia HOM05D004389 ORTHO05D005457 9.1e-60 234.2 196 64.8
AUR62000567 Chenopodium quinoa HOM05D004389 ORTHO05D005457 2.7e-59 232.6 187 65.8
Zm00001eb272600 Zea mays HOM05D004389 ORTHO05D005457 3.5e-59 232.3 197 62.9
unitig_747.g21568 Utricularia gibba HOM05D004389 ORTHO05D005457 7.7e-59 231.1 210 60.5
Zm00001eb264580 Zea mays HOM05D004389 ORTHO05D005457 1.0e-58 230.7 199 62.8
GSVIVG01000019001 Vitis vinifera HOM05D004389 ORTHO05D005457 6.5e-58 228.0 185 67.0
Lsat_1_v5_gn_7_96081 Lactuca sativa HOM05D004389 ORTHO05D005457 1.1e-57 227.3 207 60.4
Peaxi162Scf00523g00530 Petunia axillaris HOM05D004389 ORTHO05D005457 5.5e-57 224.9 203 62.6
Rhsim05G0010600 Rhododendron simsii HOM05D004389 ORTHO05D005457 2.1e-56 223.0 240 55.0
Psat0s2070g0160 Pisum sativum HOM05D004389 ORTHO05D005457 1.0e-55 220.7 177 67.8
SEGI_15909 Sequoiadendron giganteum HOM05D004389 ORTHO05D005457 2.3e-55 219.5 202 57.4
Psat0s1802g0120 Pisum sativum HOM05D004389 ORTHO05D005457 3.0e-55 219.2 177 67.2
Lalb_Chr05g0219701 Lupinus albus HOM05D004389 ORTHO05D005457 2.6e-54 216.1 207 58.5
RcHm_v2.0_Chr7g0218901 Rosa chinensis HOM05D004389 ORTHO05D005457 8.3e-53 211.1 172 65.7
HanXRQChr04g0126711 Helianthus annuus HOM05D004389 ORTHO05D005457 2.4e-52 209.5 178 64.0
vmacro22564 Vaccinium macrocarpon HOM05D004389 ORTHO05D005457 4.2e-49 198.7 178 65.2
Dinv40263 Davidia involucrata HOM05D004389 ORTHO05D005457 6.3e-45 184.9 144 70.1
Peaxi162Scf02135g00022 Petunia axillaris HOM05D004389 ORTHO05D005457 3.5e-43 179.1 199 53.3
AagrBONN_evm.TU.Sc2ySwM_117.3666 Anthoceros agrestis HOM05D004389 ORTHO05D005457 3.8e-42 175.6 204 47.5
Aqoxy4G02160 Aquilegia oxysepala HOM05D004389 ORTHO05D005457 8.6e-42 174.5 156 63.5
Os02g0467700 Oryza sativa ssp. japonica HOM05D004389 ORTHO05D005457 9.5e-41 171.0 142 63.4
Prupe.5G030200 Prunus persica HOM05D004389 ORTHO05D005457 4.7e-40 168.7 145 64.8
AagrBONN_evm.TU.Sc2ySwM_344.4143 Anthoceros agrestis HOM05D007251 ORTHO05D009266 1.4e-39 167.2 200 46.0
Pp3c11_4930 Physcomitrium patens HOM05D004389 ORTHO05D005457 1.4e-39 167.2 192 47.9
Mapoly0013s0083 Marchantia polymorpha HOM05D004389 ORTHO05D005457 1.2e-38 164.1 194 45.4
SMO171G0140 Selaginella moellendorffii HOM05D004389 ORTHO05D005457 3.4e-38 162.5 192 46.9
vmacro15018 Vaccinium macrocarpon HOM05D004389 ORTHO05D005457 3.4e-38 162.5 167 58.1
vmacro22211 Vaccinium macrocarpon HOM05D004389 ORTHO05D005457 3.4e-38 162.5 205 52.7
Ca_16978_v3 Cicer arietinum L. HOM05D004389 ORTHO05D005457 7.8e-35 151.4 85 87.1
TPR.G33563 Trifolium pratense HOM05D004389 ORTHO05D005457 1.1e-33 147.5 159 54.7
Cre13.g585850 Chlamydomonas reinhardtii HOM05D004389 ORTHO05D005457 1.5e-30 137.1 198 42.9
PRCOL_00003734 Prasinoderma coloniale HOM05D004389 ORTHO05D005457 1.5e-30 137.1 188 43.1
CAN.G551.74 Capsicum annuum HOM05D004389 ORTHO05D005457 3.4e-30 136.0 128 58.6
SHI18162 Sapria himalayana HOM05D004389 ORTHO05D005457 2.9e-29 132.9 149 53.7
Zm00001eb058290 Zea mays HOM05D004389 ORTHO05D005457 4.9e-29 132.1 82 76.8
CBR_g24390 Chara braunii HOM05D004389 ORTHO05D005457 8.3e-29 131.3 249 35.7
RhsimUnG0192500 Rhododendron simsii HOM05D004389 ORTHO05D005457 2.4e-28 129.8 83 77.1
Aqoxy5G02271 Aquilegia oxysepala HOM05D004389 ORTHO05D005457 9.2e-28 127.9 94 67.0
Nitab4.5_0006964g0010 Nicotiana tabacum HOM05D004389 ORTHO05D005457 1.6e-27 127.1 94 69.1
TPR.G30972 Trifolium pratense HOM05D004389 ORTHO05D005457 3.5e-27 125.9 87 70.1
MCO09G816 Micromonas commoda HOM05D004389 ORTHO05D005457 6.0e-27 125.2 193 39.9
MD15G1188200 Malus domestica HOM05D004389 ORTHO05D005457 5.2e-23 112.1 144 48.6
QL07p009462 Quercus lobata HOM05D004389 ORTHO05D005457 6.8e-23 111.7 75 76.0
Zm00001eb380920 Zea mays HOM05D004389 ORTHO05D005457 6.8e-23 111.7 87 64.4
FvH4_6g10990 Fragaria vesca HOM05D004389 ORTHO05D005457 1.2e-22 110.9 89 62.9
Actinidia39666 Actinidia chinensis HOM05D004389 ORTHO05D056204 1.6e-16 90.5 165 39.4
SHI18161 Sapria himalayana HOM05D004389 ORTHO05D005457 5.8e-14 82.0 56 66.1
Cfa025624 Carpinus fangiana HOM05D004389 ORTHO05D125512 9.9e-14 81.3 227 33.5
vmacro15154 Vaccinium macrocarpon HOM05D004389 ORTHO05D022937 1.2e-11 74.3 53 66.0
Medtr6g452950 Medicago truncatula HOM05D029366 ORTHO05D022937 1.9e-09 67.0 41 75.6
QL07p009230 Quercus lobata HOM05D004389 ORTHO05D005457 2.1e-08 63.5 76 51.3
HPP92_010328 Vanilla planifolia HOM05D004389 ORTHO05D022937 1.8e-07 60.5 42 61.9
vmacro17239 Vaccinium macrocarpon HOM05D040504 ORTHO05D426804 2.4e-07 60.1 162 33.3


User provided reference genes

Program Settings