Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Sabra13G0025600 Salix brachista HOM05D004239 ORTHO05D005191 2.1e-225 785.4 406 100.0
Potri.013G024000 Populus trichocarpa HOM05D004239 ORTHO05D005191 8.0e-193 677.2 406 88.9
Potri.005G035300 Populus trichocarpa HOM05D004239 ORTHO05D005191 4.8e-190 667.9 406 86.0
Manes.09G165700 Manihot esculenta HOM05D004239 ORTHO05D005191 5.2e-168 594.7 406 78.6
QL03p006503 Quercus lobata HOM05D004239 ORTHO05D005191 2.6e-167 592.4 405 76.5
Manes.08G122300 Manihot esculenta HOM05D004239 ORTHO05D005191 4.4e-167 591.7 406 76.6
Dinv40275 Davidia involucrata HOM05D004239 ORTHO05D005191 5.4e-165 584.7 406 75.6
Cfa006576 Carpinus fangiana HOM05D004239 ORTHO05D005191 3.5e-164 582.0 406 74.9
CiPaw.07G016500 Carya illinoinensis HOM05D004239 ORTHO05D005191 8.6e-163 577.4 406 74.9
Oeu027738.1 Olea europaea HOM05D004239 ORTHO05D005191 7.3e-162 574.3 406 74.6
Cpa.g.sc48.35 Carica papaya HOM05D004239 ORTHO05D005191 2.8e-161 572.4 406 74.6
Prupe.6G327600 Prunus persica HOM05D004239 ORTHO05D005191 4.7e-161 571.6 406 73.6
Peaxi162Scf00037g00226 Petunia axillaris HOM05D004239 ORTHO05D005191 1.1e-160 570.5 406 74.1
Haze_04207 Corylus avellana HOM05D004239 ORTHO05D005191 1.2e-159 567.0 406 73.6
TAR636G0428 Trochodendron aralioides HOM05D004239 ORTHO05D005191 2.0e-159 566.2 407 74.2
Actinidia23624 Actinidia chinensis HOM05D004239 ORTHO05D005191 3.4e-159 565.5 406 72.4
MD12G1220700 Malus domestica HOM05D004239 ORTHO05D005191 1.3e-158 563.5 404 73.5
vmacro23128 Vaccinium macrocarpon HOM05D004239 ORTHO05D005191 2.9e-158 562.4 406 71.4
Cc00_g15600 Coffea canephora HOM05D004239 ORTHO05D005191 4.9e-158 561.6 406 72.4
Eucgr.B01993 Eucalyptus grandis HOM05D004239 ORTHO05D005191 1.4e-157 560.1 404 72.8
FvH4_6g05650 Fragaria vesca HOM05D004239 ORTHO05D005191 1.9e-157 559.7 406 71.4
CANSAT54G0620 Cannabis sativa HOM05D004239 ORTHO05D005191 2.4e-157 559.3 406 73.4
GSVIVG01000037001 Vitis vinifera HOM05D004239 ORTHO05D005191 4.1e-157 558.5 405 72.3
Nitab4.5_0005388g0060 Nicotiana tabacum HOM05D004239 ORTHO05D005191 5.4e-157 558.1 406 72.7
Oeu038249.1 Olea europaea HOM05D004239 ORTHO05D005191 9.2e-157 557.4 406 72.4
Solyc01g098840.3 Solanum lycopersicum HOM05D004239 ORTHO05D005191 1.6e-156 556.6 402 72.4
Sopen01g042380 Solanum pennellii HOM05D004239 ORTHO05D005191 1.6e-156 556.6 402 72.1
RcHm_v2.0_Chr3g0454501 Rosa chinensis HOM05D004239 ORTHO05D005191 6.0e-156 554.7 406 71.2
PGSC0003DMG401028586 Solanum tuberosum HOM05D004239 ORTHO05D005191 1.3e-155 553.5 402 72.1
Glyma.03G239000 Glycine max HOM05D004239 ORTHO05D005191 2.3e-155 552.7 406 70.7
Ciclev10001383m.g Citrus clementina HOM05D004239 ORTHO05D005191 3.9e-155 552.0 394 72.1
SGA_v2.0_scaffold81G26082 Striga asiatica HOM05D004239 ORTHO05D005191 3.9e-155 552.0 406 71.7
Nn4g26228 Nelumbo nucifera HOM05D004239 ORTHO05D005191 6.6e-155 551.2 406 70.2
TWI12G0310 Tripterygium wilfordii HOM05D004239 ORTHO05D005191 2.5e-154 549.3 401 72.6
Nn1g02198 Nelumbo nucifera HOM05D004239 ORTHO05D005191 4.3e-154 548.5 405 70.4
MD04G1206900 Malus domestica HOM05D004239 ORTHO05D005191 5.6e-154 548.1 406 71.2
Migut.N01997 Erythranthe guttata HOM05D004239 ORTHO05D005191 1.2e-153 547.0 406 71.9
MSTRG.5107 Avicennia marina HOM05D004239 ORTHO05D005191 1.6e-153 546.6 404 70.8
Ca_09364_v3 Cicer arietinum L. HOM05D004239 ORTHO05D005191 2.1e-153 546.2 407 71.7
vmacro19629 Vaccinium macrocarpon HOM05D004239 ORTHO05D005191 1.1e-152 543.9 406 69.5
Rhsim05G0142700 Rhododendron simsii HOM05D004239 ORTHO05D005191 3.1e-152 542.3 406 69.7
EL10Ac4g09340 Beta vulgaris HOM05D004239 ORTHO05D005191 1.2e-151 540.4 404 70.0
Medtr7g113660 Medicago truncatula HOM05D004239 ORTHO05D005191 1.2e-151 540.4 407 71.3
Phvul.006G092900 Phaseolus vulgaris HOM05D004239 ORTHO05D005191 1.2e-151 540.4 406 69.7
TWI36G1635 Tripterygium wilfordii HOM05D004239 ORTHO05D005191 1.2e-151 540.4 403 70.5
Psat3g010600 Pisum sativum HOM05D004239 ORTHO05D005191 1.5e-151 540.0 407 71.0
Sed0006954 Sechium edule HOM05D004239 ORTHO05D005191 1.5e-151 540.0 401 70.8
AUR62005132 Chenopodium quinoa HOM05D004239 ORTHO05D005191 2.6e-151 539.3 402 70.1
Nitab4.5_0009323g0010 Nicotiana tabacum HOM05D004239 ORTHO05D005191 2.6e-151 539.3 406 69.7
Aqoxy2G03302 Aquilegia oxysepala HOM05D004239 ORTHO05D005191 9.9e-151 537.3 408 69.6
CAN.G1077.21 Capsicum annuum HOM05D004239 ORTHO05D005191 1.3e-150 537.0 401 70.1
VMungo0540G1286 Vigna mungo HOM05D004239 ORTHO05D005191 2.2e-150 536.2 406 69.5
Lalb_Chr04g0260811 Lupinus albus HOM05D004239 ORTHO05D005191 2.9e-150 535.8 406 69.0
Hund21687 Selenicereus undatus HOM05D004239 ORTHO05D005191 3.8e-150 535.4 404 69.6
SalBow3G0110 Salvia bowleyana HOM05D004239 ORTHO05D005191 8.4e-150 534.3 406 69.7
CSS0041428 Camellia sinensis var. sinensis HOM05D004239 ORTHO05D005191 2.4e-149 532.7 406 70.7
Peaxi162Scf00471g00018 Petunia axillaris HOM05D004239 ORTHO05D005191 2.4e-149 532.7 402 70.1
PSO063G4628 Papaver somniferum HOM05D004239 ORTHO05D005191 3.2e-149 532.3 405 69.4
Sed0007278 Sechium edule HOM05D004239 ORTHO05D005191 3.5e-148 528.9 407 69.8
CsaV3_2G005140 Cucumis sativus L. HOM05D004239 ORTHO05D005191 7.8e-148 527.7 406 69.5
FAN14G2823 Fragaria x ananassa HOM05D004239 ORTHO05D005191 7.8e-148 527.7 406 68.5
TPR.G33198 Trifolium pratense HOM05D004239 ORTHO05D005191 1.0e-147 527.3 411 69.6
ClCG02G015900 Citrullus lanatus HOM05D004239 ORTHO05D005191 1.3e-147 526.9 401 70.6
Lj9A25G19 Lonicera japonica HOM05D004239 ORTHO05D005191 2.3e-147 526.2 406 70.0
Lj9A26G17 Lonicera japonica HOM05D004239 ORTHO05D005191 2.3e-147 526.2 406 70.0
AUR62000841 Chenopodium quinoa HOM05D004239 ORTHO05D005191 3.0e-147 525.8 413 68.0
FAN05G5256 Fragaria x ananassa HOM05D004239 ORTHO05D005191 1.5e-146 523.5 406 68.2
MELO3C004278.2 Cucumis melo HOM05D004239 ORTHO05D005191 2.5e-146 522.7 406 68.5
DCAR_029425 Daucus carota HOM05D004239 ORTHO05D005191 3.6e-145 518.8 406 67.0
PGR083G1755 Punica granatum HOM05D004239 ORTHO05D005191 8.1e-145 517.7 406 68.5
THA.LOC104802807 Tarenaya hassleriana HOM05D004239 ORTHO05D005191 1.4e-144 516.9 403 68.5
unitig_0.g2376 Utricularia gibba HOM05D004239 ORTHO05D005191 1.4e-144 516.9 406 67.5
Dinv23953 Davidia involucrata HOM05D004239 ORTHO05D005191 2.6e-143 512.7 373 72.9
FAN02G3565 Fragaria x ananassa HOM05D004239 ORTHO05D005191 2.6e-143 512.7 438 63.9
arahy.Tifrunner.gnm1.ann1.VWT09S Arachis hypogaea HOM05D004239 ORTHO05D005191 4.4e-143 511.9 408 67.4
FAN14G1612 Fragaria x ananassa HOM05D004239 ORTHO05D005191 7.6e-143 511.1 438 63.5
FAN09G3705 Fragaria x ananassa HOM05D004239 ORTHO05D005191 1.7e-142 510.0 438 63.7
Duzib106G0174 Durio zibethinus HOM05D004239 ORTHO05D005191 4.9e-142 508.4 406 66.0
Thhalv10004396m.g Eutrema salsugineum HOM05D004239 ORTHO05D005191 4.9e-142 508.4 403 67.7
ECA234G2741 Erigeron canadensis HOM05D004239 ORTHO05D005191 3.2e-141 505.8 410 66.6
BcaB04g19671 Brassica carinata HOM05D004239 ORTHO05D005191 5.4e-141 505.0 405 67.4
Lsat_1_v5_gn_4_139401 Lactuca sativa HOM05D004239 ORTHO05D005191 5.4e-141 505.0 407 66.6
FAN05G0638 Fragaria x ananassa HOM05D004239 ORTHO05D005191 7.1e-141 504.6 438 63.0
A09p05280 Brassica napus HOM05D004239 ORTHO05D005191 9.3e-141 504.2 404 66.8
HanXRQChr09g0259671 Helianthus annuus HOM05D004239 ORTHO05D005191 1.2e-140 503.8 406 66.3
BraA09t36167Z Brassica rapa HOM05D004239 ORTHO05D005191 2.1e-140 503.1 403 66.7
Sp2g20670 Schrenkiella parvula HOM05D004239 ORTHO05D005191 2.1e-140 503.1 404 67.6
Aa31LG11G9210 Aethionema arabicum HOM05D004239 ORTHO05D005191 2.7e-140 502.7 404 66.8
A02p38630 Brassica napus HOM05D004239 ORTHO05D005191 2.7e-140 502.7 403 66.7
BraA02t08839Z Brassica rapa HOM05D004239 ORTHO05D005191 2.7e-140 502.7 403 66.5
BolC2t11880H Brassica oleracea HOM05D004239 ORTHO05D005191 4.6e-140 501.9 403 66.0
C09p05760 Brassica napus HOM05D004239 ORTHO05D005191 7.8e-140 501.1 403 66.5
Thecc.05G305000 Theobroma cacao HOM05D004239 ORTHO05D005191 7.8e-140 501.1 404 65.3
TAR365G0701 Trochodendron aralioides HOM05D004239 ORTHO05D005191 3.0e-139 499.2 366 72.1
C02p58120 Brassica napus HOM05D004239 ORTHO05D005191 6.6e-139 498.0 403 65.8
arahy.Tifrunner.gnm1.ann1.5NK7V3 Arachis hypogaea HOM05D004239 ORTHO05D005191 2.5e-138 496.1 432 63.0
BcaC04g23678 Brassica carinata HOM05D004239 ORTHO05D005191 4.3e-138 495.4 403 66.0
BolC9t53503H Brassica oleracea HOM05D004239 ORTHO05D005191 4.3e-138 495.4 403 66.0
Gohir.A11G295900 Gossypium hirsutum HOM05D004239 ORTHO05D005191 1.8e-136 490.0 406 64.0
Lj1g0017751 Lotus japonicus HOM05D004239 ORTHO05D005191 4.0e-136 488.8 367 68.9
AT5G27450 Arabidopsis thaliana HOM05D004239 ORTHO05D005191 1.5e-135 486.9 403 66.0
Carub.0006s2508 Capsella rubella HOM05D004239 ORTHO05D005191 2.6e-135 486.1 403 66.3
Gohir.D11G311000 Gossypium hirsutum HOM05D004239 ORTHO05D005191 3.4e-135 485.7 406 63.5
Gorai.007G342800 Gossypium raimondii HOM05D004239 ORTHO05D005191 1.3e-134 483.8 406 63.5
Sc09g0003220 Simmondsia chinensis HOM05D004239 ORTHO05D005191 6.4e-134 481.5 366 69.7
AL6G39560 Arabidopsis lyrata HOM05D004239 ORTHO05D005191 2.4e-133 479.6 403 65.5
Actinidia19795 Actinidia chinensis HOM05D004239 ORTHO05D005191 6.0e-132 474.9 371 69.3
CARHR186060 Cardamine hirsuta HOM05D004239 ORTHO05D005191 9.6e-130 467.6 403 63.5
ATR0561G047 Amborella trichopoda HOM05D004239 ORTHO05D005191 1.1e-128 464.2 401 63.3
BcaC03g17788 Brassica carinata HOM05D004239 ORTHO05D005191 1.8e-128 463.4 403 62.5
Glyma.19G236200 Glycine max HOM05D004239 ORTHO05D005191 4.0e-128 462.2 374 65.0
ClCG10G005450 Citrullus lanatus HOM05D004239 ORTHO05D005191 1.1e-125 454.1 408 62.7
SEGI_00819 Sequoiadendron giganteum HOM05D004239 ORTHO05D005191 1.5e-122 443.7 410 59.0
Lsat_1_v5_gn_2_64361 Lactuca sativa HOM05D004239 ORTHO05D005191 2.2e-118 429.9 417 58.0
Nitab4.5_0002031g0070 Nicotiana tabacum HOM05D004239 ORTHO05D005191 2.9e-118 429.5 406 59.4
Os10g0329300 Oryza sativa ssp. japonica HOM05D004239 ORTHO05D005191 2.9e-118 429.5 407 58.2
Zm00001eb209270 Zea mays HOM05D004239 ORTHO05D005191 8.4e-118 427.9 407 56.5
SHI18197 Sapria himalayana HOM05D004239 ORTHO05D005191 1.1e-117 427.6 406 57.9
Sed0017775 Sechium edule HOM05D004239 ORTHO05D005191 6.7e-115 418.3 415 57.6
Zm00001eb209470 Zea mays HOM05D004239 ORTHO05D005191 8.7e-115 417.9 395 57.2
Gorai.007G296000 Gossypium raimondii HOM05D004239 ORTHO05D005191 2.4e-112 409.8 406 57.1
Gohir.D11G274300 Gossypium hirsutum HOM05D004239 ORTHO05D005191 9.7e-106 387.9 406 55.4
CDE02G3721 Ceratophyllum demersum HOM05D004239 ORTHO05D005191 2.5e-101 373.2 308 61.7
MELO3C004281.2 Cucumis melo HOM05D004239 ORTHO05D005191 3.8e-94 349.4 289 64.7
Pp3c22_490 Physcomitrium patens HOM05D004239 ORTHO05D005191 3.6e-92 342.8 438 46.6
RcHm_v2.0_Chr7g0220931 Rosa chinensis HOM05D004239 ORTHO05D005191 1.1e-85 321.2 304 59.9
Mapoly0214s0007 Marchantia polymorpha HOM05D004239 ORTHO05D005191 2.1e-84 317.0 456 41.9
Actinidia05711 Actinidia chinensis HOM05D004239 ORTHO05D005191 1.3e-81 307.8 241 66.4
AagrBONN_evm.TU.Sc2ySwM_368.2263 Anthoceros agrestis HOM05D004239 ORTHO05D005191 1.7e-81 307.4 386 45.9
HPP92_020860 Vanilla planifolia HOM05D004239 ORTHO05D005191 5.2e-75 285.8 283 54.1
SMO347G0436 Selaginella moellendorffii HOM05D004239 ORTHO05D005191 9.8e-74 281.6 404 41.1
CBR_g3053 Chara braunii HOM05D004239 ORTHO05D005191 8.6e-62 241.9 481 35.6
CSS0049885 Camellia sinensis var. sinensis HOM05D004239 ORTHO05D005191 3.1e-59 233.4 164 73.2
Cfa007056 Carpinus fangiana HOM05D004239 ORTHO05D005191 6.8e-51 205.7 149 76.5
SMO167G0025 Selaginella moellendorffii HOM05D004239 ORTHO05D005191 2.0e-50 204.1 262 47.3
Nitab4.5_0000327g0030 Nicotiana tabacum HOM05D004239 ORTHO05D005191 1.1e-48 198.4 137 75.9
vmacro05023 Vaccinium macrocarpon HOM05D004239 ORTHO05D005191 6.8e-43 179.1 178 56.7
RcHm_v2.0_Chr3g0454481 Rosa chinensis HOM05D004239 ORTHO05D005191 3.7e-41 173.3 128 70.3
Cfa027123 Carpinus fangiana HOM05D004239 ORTHO05D005191 1.2e-34 151.8 403 30.5
RcHm_v2.0_Chr7g0220941 Rosa chinensis HOM05D004239 ORTHO05D005191 1.6e-31 141.4 89 79.8
Zm00001eb063950 Zea mays HOM05D004239 ORTHO05D005191 3.9e-30 136.7 180 43.9
Lj5A557G19 Lonicera japonica HOM05D004239 ORTHO05D005191 5.1e-30 136.3 149 55.7
Lj5A557T20 Lonicera japonica HOM05D004239 ORTHO05D005191 2.8e-28 130.6 155 52.3
COL.COLO4_16926 Corchorus olitorius HOM05D004239 ORTHO05D005191 1.4e-27 128.3 108 60.2
Actinidia05710 Actinidia chinensis HOM05D004239 ORTHO05D005191 1.8e-27 127.9 79 78.5
Lj5A555G9 Lonicera japonica HOM05D004239 ORTHO05D005191 4.4e-26 123.2 138 55.1
Lj5A556G14 Lonicera japonica HOM05D004239 ORTHO05D005191 4.9e-25 119.8 120 58.3
AagrBONN_evm.TU.Sc2ySwM_117.3520 Anthoceros agrestis HOM05D004239 ORTHO05D005191 3.0e-22 110.5 213 36.2
Lj5A558T15 Lonicera japonica HOM05D004239 ORTHO05D005191 6.6e-22 109.4 85 63.5
Lj5A549T14 Lonicera japonica HOM05D004239 ORTHO05D005191 3.1e-19 100.5 126 53.2
Lj5A552G14 Lonicera japonica HOM05D004239 ORTHO05D005191 1.5e-18 98.2 82 62.2
Lj5A558T16 Lonicera japonica HOM05D004239 ORTHO05D005191 3.4e-18 97.1 126 50.8
Lj5A550T6 Lonicera japonica HOM05D004239 ORTHO05D005191 7.1e-16 89.4 125 48.0
Potri.015G125201 Populus trichocarpa HOM05D004239 ORTHO05D005191 1.8e-14 84.7 51 70.6
Lsat_1_v5_gn_7_76161 Lactuca sativa HOM05D004239 ORTHO05D005191 3.3e-13 80.5 90 51.1
Zm00001eb252600 Zea mays HOM05D004239 ORTHO05D005191 3.3e-13 80.5 106 42.5
COL.COLO4_16925 Corchorus olitorius HOM05D004239 ORTHO05D005191 3.7e-12 77.0 68 52.9
Zm00001eb193770 Zea mays HOM05D004239 ORTHO05D445176 1.8e-11 74.7 77 51.9
Zm00001eb313220 Zea mays HOM05D004239 ORTHO05D005191 4.5e-10 70.1 81 50.6
CiPaw.07G016300 Carya illinoinensis HOM05D006625 ORTHO05D008060 2.9e-09 67.4 39 89.7
arahy.Tifrunner.gnm1.ann1.04YHM3 Arachis hypogaea HOM05D004239 ORTHO05D005191 3.2e-08 63.9 100 44.0
RcHm_v2.0_Chr3g0454471 Rosa chinensis HOM05D004239 ORTHO05D005191 5.5e-08 63.2 36 86.1
Oeu038248.1 Olea europaea HOM05D004239 ORTHO05D288322 9.3e-08 62.4 36 86.1
Zm00001eb019540 Zea mays HOM05D000931 ORTHO05D001924 2.7e-07 60.8 63 52.4
Zm00001eb342830 Zea mays HOM05D004239 ORTHO05D005191 3.5e-07 60.5 43 72.1


User provided reference genes

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