Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Sabra13G0025400 Salix brachista HOM05D006048 ORTHO05D007642 0.0e+00 1935.2 1033 100.0
Potri.013G023600 Populus trichocarpa HOM05D006048 ORTHO05D007642 0.0e+00 1622.1 1038 85.8
Potri.005G034100 Populus trichocarpa HOM05D006048 ORTHO05D007642 0.0e+00 1379.0 1034 72.3
Sabra05G0036000 Salix brachista HOM05D006048 ORTHO05D007642 0.0e+00 1289.2 1055 67.8
Manes.09G166100 Manihot esculenta HOM05D006048 ORTHO05D007642 2.1e-213 746.9 1092 45.8
TWI56G0330 Tripterygium wilfordii HOM05D006048 ORTHO05D007642 1.3e-186 657.9 1081 42.7
Duzib128G0698 Durio zibethinus HOM05D006048 ORTHO05D007642 1.4e-177 627.9 1052 42.0
Thecc.05G304700 Theobroma cacao HOM05D006048 ORTHO05D007642 2.7e-176 623.6 1012 44.0
Haze_04204 Corylus avellana HOM05D006048 ORTHO05D007642 5.6e-174 615.9 1068 41.2
TWI12G1173 Tripterygium wilfordii HOM05D006048 ORTHO05D007642 2.1e-173 614.0 1083 39.8
Gohir.A11G264200 Gossypium hirsutum HOM05D006048 ORTHO05D007642 1.7e-170 604.4 1052 41.2
Gohir.D11G274400 Gossypium hirsutum HOM05D006048 ORTHO05D007642 1.0e-167 595.1 1057 41.1
Gorai.007G296200 Gossypium raimondii HOM05D006048 ORTHO05D007642 1.0e-167 595.1 1054 41.3
Cfa006579 Carpinus fangiana HOM05D006048 ORTHO05D007642 3.9e-167 593.2 1089 40.8
Ciclev10000202m.g Citrus clementina HOM05D006048 ORTHO05D007642 2.9e-162 577.0 1062 42.2
QL03p006882 Quercus lobata HOM05D006048 ORTHO05D007642 3.6e-157 560.1 1043 40.5
COL.COLO4_13482 Corchorus olitorius HOM05D006048 ORTHO05D007642 2.8e-149 533.9 619 49.9
GSVIVG01000040001 Vitis vinifera HOM05D006048 ORTHO05D007642 4.6e-144 516.5 554 51.4
Prupe.6G327100 Prunus persica HOM05D006048 ORTHO05D007642 3.0e-143 513.8 1056 38.9
Actinidia05707 Actinidia chinensis HOM05D006048 ORTHO05D007642 1.2e-139 501.9 1044 38.9
MD12G1220300 Malus domestica HOM05D006048 ORTHO05D007642 1.2e-139 501.9 1033 37.7
Cpa.g.sc48.39 Carica papaya HOM05D006048 ORTHO05D007642 2.6e-139 500.7 1054 38.7
MD04G1206500 Malus domestica HOM05D006048 ORTHO05D007642 2.6e-139 500.7 1046 39.7
Hma1.2p1_0928F.1_g237870 Hydrangea macrophylla HOM05D006048 ORTHO05D007642 1.9e-137 494.6 1057 37.0
RcHm_v2.0_Chr3g0454571 Rosa chinensis HOM05D006048 ORTHO05D007642 1.9e-137 494.6 745 42.0
FvH4_6g05680 Fragaria vesca HOM05D006048 ORTHO05D007642 1.0e-135 488.8 1046 36.7
TAR636G0181 Trochodendron aralioides HOM05D006048 ORTHO05D007642 5.1e-135 486.5 647 45.3
FAN14G2795 Fragaria x ananassa HOM05D006048 ORTHO05D007642 6.6e-135 486.1 1061 36.5
FAN14G2991 Fragaria x ananassa HOM05D006048 ORTHO05D007642 3.3e-134 483.8 1071 36.0
FAN02G2040 Fragaria x ananassa HOM05D006048 ORTHO05D007642 3.6e-133 480.3 1042 35.7
CSS0040601 Camellia sinensis var. sinensis HOM05D006048 ORTHO05D007642 4.8e-133 479.9 615 46.0
FAN09G2502 Fragaria x ananassa HOM05D006048 ORTHO05D007642 3.1e-132 477.2 1076 36.0
FAN05G1530 Fragaria x ananassa HOM05D006048 ORTHO05D007642 8.4e-130 469.2 1060 36.2
Actinidia23630 Actinidia chinensis HOM05D006048 ORTHO05D007642 8.1e-125 452.6 1061 36.7
Dinv23949 Davidia involucrata HOM05D006048 ORTHO05D007642 8.4e-122 442.6 1047 36.6
FAN05G2734 Fragaria x ananassa HOM05D006048 ORTHO05D007642 5.1e-119 433.3 985 35.8
Medtr1g082840 Medicago truncatula HOM05D006048 ORTHO05D007642 2.6e-115 421.0 625 42.4
ClCG02G015880 Citrullus lanatus HOM05D006048 ORTHO05D007642 1.7e-114 418.3 1027 33.4
Oeu017488.1 Olea europaea HOM05D006048 ORTHO05D007642 3.8e-114 417.2 650 41.8
THA.LOC104805873 Tarenaya hassleriana HOM05D006048 ORTHO05D007642 3.3e-110 404.1 1055 33.0
MELO3C004275.2 Cucumis melo HOM05D006048 ORTHO05D007642 4.8e-109 400.2 1038 33.9
Lalb_Chr21g0310721 Lupinus albus HOM05D006048 ORTHO05D007642 8.2e-109 399.4 761 37.6
CsaV3_2G005180 Cucumis sativus L. HOM05D006048 ORTHO05D007642 3.1e-108 397.5 1019 33.4
PGSC0003DMG401028588 Solanum tuberosum HOM05D006048 ORTHO05D007642 3.1e-108 397.5 1126 31.3
Sed0020620 Sechium edule HOM05D006048 ORTHO05D007642 4.1e-108 397.1 951 33.6
THA.LOC104820894 Tarenaya hassleriana HOM05D006048 ORTHO05D007642 1.5e-107 395.2 1072 31.6
Sopen01g042410 Solanum pennellii HOM05D006048 ORTHO05D007642 3.4e-107 394.0 1111 32.0
Lj5g0003009 Lotus japonicus HOM05D006048 ORTHO05D007642 4.5e-107 393.7 781 36.6
TPR.G6104 Trifolium pratense HOM05D006048 ORTHO05D007642 5.9e-107 393.3 1022 32.6
Migut.B01039 Erythranthe guttata HOM05D006048 ORTHO05D007642 7.7e-107 392.9 648 39.8
Solyc01g098870.3 Solanum lycopersicum HOM05D006048 ORTHO05D007642 1.3e-106 392.1 1090 31.7
CAN.G1077.18 Capsicum annuum HOM05D006048 ORTHO05D007642 4.2e-105 387.1 1049 31.8
Rhsim07G0182400 Rhododendron simsii HOM05D006048 ORTHO05D007642 7.2e-105 386.3 1146 33.2
Ca_10107_v3 Cicer arietinum L. HOM05D006048 ORTHO05D007642 1.6e-104 385.2 658 39.5
Lalb_Chr06g0167761 Lupinus albus HOM05D006048 ORTHO05D007642 7.9e-104 382.9 607 40.7
Nitab4.5_0008677g0020 Nicotiana tabacum HOM05D006048 ORTHO05D007642 3.0e-103 380.9 1085 31.5
Peaxi162Scf00037g00236 Petunia axillaris HOM05D006048 ORTHO05D007642 3.0e-103 380.9 1091 31.3
Nitab4.5_0005388g0020 Nicotiana tabacum HOM05D006048 ORTHO05D007642 1.1e-102 379.0 1029 33.3
Glyma.20G233200 Glycine max HOM05D006048 ORTHO05D007642 2.5e-102 377.9 770 35.3
Nn4g26237 Nelumbo nucifera HOM05D006048 ORTHO05D007642 3.3e-102 377.5 666 38.1
Glyma.10G155100 Glycine max HOM05D006048 ORTHO05D007642 1.3e-101 375.6 777 35.6
Psat6g149640 Pisum sativum HOM05D006048 ORTHO05D007642 6.9e-100 369.8 586 41.8
PGR031G0290 Punica granatum HOM05D006048 ORTHO05D007642 7.7e-99 366.3 1125 30.9
SalBow8G1366 Salvia bowleyana HOM05D006048 ORTHO05D007642 1.7e-98 365.2 650 39.1
VMungo0720G0675 Vigna mungo HOM05D006048 ORTHO05D007642 5.0e-98 363.6 717 36.3
MSTRG.20430 Avicennia marina HOM05D006048 ORTHO05D007642 8.5e-98 362.8 626 38.5
ECA238G0871 Erigeron canadensis HOM05D006048 ORTHO05D007642 1.4e-97 362.1 733 35.5
Sc06g0003370 Simmondsia chinensis HOM05D006048 ORTHO05D007642 3.2e-97 360.9 1028 30.9
Cc02_g33600 Coffea canephora HOM05D006048 ORTHO05D007642 6.7e-95 353.2 622 39.4
Manes.08G121600 Manihot esculenta HOM05D006048 ORTHO05D007642 2.2e-93 348.2 768 37.0
Phvul.007G180600 Phaseolus vulgaris HOM05D006048 ORTHO05D007642 1.1e-92 345.9 1066 30.9
Aqoxy2G03311 Aquilegia oxysepala HOM05D006048 ORTHO05D007642 9.1e-92 342.8 667 35.5
AL1G65400 Arabidopsis lyrata HOM05D006048 ORTHO05D007642 1.5e-91 342.0 1093 30.6
Nn1g02208 Nelumbo nucifera HOM05D006048 ORTHO05D007642 1.0e-90 339.3 675 36.6
AT1G54920 Arabidopsis thaliana HOM05D006048 ORTHO05D007642 2.2e-90 338.2 747 35.2
Hund07062 Selenicereus undatus HOM05D006048 ORTHO05D007642 3.8e-90 337.4 657 35.5
AUR62005136 Chenopodium quinoa HOM05D006048 ORTHO05D007642 1.0e-87 329.3 582 37.3
Eucgr.H04481 Eucalyptus grandis HOM05D006048 ORTHO05D007642 8.8e-87 326.2 1077 29.6
Aa31LG2G11800 Aethionema arabicum HOM05D006048 ORTHO05D007642 2.2e-85 321.6 1091 29.4
Ah.06g189270 Amaranthus hybridus HOM05D006048 ORTHO05D007642 3.7e-85 320.9 653 36.8
AUR62000837 Chenopodium quinoa HOM05D006048 ORTHO05D007642 8.2e-85 319.7 615 36.4
MBI19_g16658_MAGBIO Magnolia biondii HOM05D006048 ORTHO05D007642 4.1e-84 317.4 624 35.3
C09p24290 Brassica napus HOM05D006048 ORTHO05D007642 5.3e-84 317.0 1069 30.1
EL10Ac4g09343 Beta vulgaris HOM05D006048 ORTHO05D007642 3.5e-83 314.3 519 38.5
SGA_v2.0_scaffold172G38965 Striga asiatica HOM05D006048 ORTHO05D007642 1.3e-82 312.4 666 37.1
BcaC04g22032 Brassica carinata HOM05D006048 ORTHO05D007642 3.8e-82 310.8 1069 29.6
CARHR284550 Cardamine hirsuta HOM05D006048 ORTHO05D007642 5.0e-82 310.5 814 31.1
A09p19290 Brassica napus HOM05D006048 ORTHO05D007642 1.5e-81 308.9 718 34.7
PSO302G0271 Papaver somniferum HOM05D006048 ORTHO05D007642 1.9e-81 308.5 390 43.1
BolC9t55346H Brassica oleracea HOM05D006048 ORTHO05D007642 2.5e-81 308.1 1079 29.8
Carub.0002s0845 Capsella rubella HOM05D006048 ORTHO05D007642 5.5e-81 307.0 1086 29.9
vmacro05021 Vaccinium macrocarpon HOM05D006048 ORTHO05D007642 2.1e-80 305.1 1068 29.4
PSO170G0056 Papaver somniferum HOM05D006048 ORTHO05D007642 4.0e-79 300.8 390 42.3
BcaB07g31106 Brassica carinata HOM05D006048 ORTHO05D007642 3.1e-76 291.2 1070 28.9
BraA09t37546Z Brassica rapa HOM05D006048 ORTHO05D007642 1.2e-75 289.3 725 32.8
HanXRQChr15g0463081 Helianthus annuus HOM05D006048 ORTHO05D007642 7.7e-75 286.6 1010 29.1
CiPaw.07G016800 Carya illinoinensis HOM05D006048 ORTHO05D007642 6.3e-69 266.9 858 31.9
Atru.chr2.428 Acer truncatum HOM05D006048 ORTHO05D007642 7.7e-67 260.0 182 65.4
Lsat_1_v5_gn_2_64861 Lactuca sativa HOM05D006048 ORTHO05D007642 1.0e-66 259.6 546 33.9
ATR0626G180 Amborella trichopoda HOM05D006048 ORTHO05D007642 1.6e-64 252.3 393 37.9
CDE05G2441 Ceratophyllum demersum HOM05D006048 ORTHO05D007642 6.4e-53 213.8 394 34.8
SEGI_14627 Sequoiadendron giganteum HOM05D006048 ORTHO05D007642 1.1e-47 196.4 496 30.4
Psat7g077840 Pisum sativum HOM05D006048 ORTHO05D007642 9.8e-46 189.9 177 51.4
Atru.chr2.429 Acer truncatum HOM05D006048 ORTHO05D007642 6.0e-43 180.6 224 46.0
Os11g0148400 Oryza sativa ssp. japonica HOM05D006048 ORTHO05D007642 9.5e-41 173.3 565 27.3
Lj9A29T9 Lonicera japonica HOM05D006048 ORTHO05D007642 3.4e-38 164.9 309 40.1
Lj9A18T10 Lonicera japonica HOM05D006048 ORTHO05D007642 5.8e-38 164.1 310 40.3
CDE05G0200 Ceratophyllum demersum HOM05D006048 ORTHO05D007642 4.9e-37 161.0 287 34.8
HPP92_011281 Vanilla planifolia HOM05D006048 ORTHO05D007642 3.2e-36 158.3 387 30.7
HPP92_011303 Vanilla planifolia HOM05D006048 ORTHO05D007642 2.1e-35 155.6 379 30.1
Mapoly0011s0030 Marchantia polymorpha HOM05D006048 ORTHO05D007642 2.5e-33 148.7 256 34.4
AagrBONN_evm.TU.Sc2ySwM_344.3982 Anthoceros agrestis HOM05D006048 ORTHO05D007642 8.4e-29 133.7 266 29.3
CiPaw.08G165500 Carya illinoinensis HOM05D006048 ORTHO05D007642 2.5e-25 122.1 90 61.1
MBI19_g40207_MAGBIO Magnolia biondii HOM05D006048 ORTHO05D007642 7.6e-22 110.5 282 30.1
Actinidia01443 Actinidia chinensis HOM05D006048 ORTHO05D007642 1.6e-16 92.8 122 42.6
SMO203G0156 Selaginella moellendorffii HOM05D006048 ORTHO05D007642 1.6e-16 92.8 183 32.2
Atru.chr2.430 Acer truncatum HOM05D006048 ORTHO05D007642 3.3e-09 68.6 136 39.0
MBI12_g31451_MAGBIO Magnolia biondii HOM05D006048 ORTHO05D007642 2.0e-06 59.3 106 35.8


User provided reference genes

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