Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Sabra13G0024000 Salix brachista HOM05D006420 ORTHO05D008009 1.4e-166 589.7 327 100.0
Potri.013G021600 Populus trichocarpa HOM05D006420 ORTHO05D008009 8.5e-145 517.3 335 88.1
Manes.08G120400 Manihot esculenta HOM05D006420 ORTHO05D008009 1.9e-88 330.1 241 68.5
Thecc.05G302400 Theobroma cacao HOM05D006420 ORTHO05D008009 9.0e-86 321.2 233 71.2
COL.COLO4_13456 Corchorus olitorius HOM05D006420 ORTHO05D008009 4.2e-83 312.4 243 67.1
Cfa006594 Carpinus fangiana HOM05D006420 ORTHO05D008009 6.0e-82 308.5 218 69.7
Duzib177G0348 Durio zibethinus HOM05D006420 ORTHO05D008009 3.0e-81 306.2 248 64.1
Cpa.g.sc48.61 Carica papaya HOM05D006420 ORTHO05D008009 2.5e-80 303.1 244 64.3
Gohir.D08G227700 Gossypium hirsutum HOM05D006420 ORTHO05D008009 2.5e-80 303.1 233 66.5
Gorai.004G241900 Gossypium raimondii HOM05D006420 ORTHO05D008009 2.5e-80 303.1 233 66.5
Gohir.A08G210900 Gossypium hirsutum HOM05D006420 ORTHO05D008009 3.3e-80 302.8 233 66.1
Actinidia05697 Actinidia chinensis HOM05D006420 ORTHO05D008009 7.3e-80 301.6 217 67.7
Duzib106G1877 Durio zibethinus HOM05D006420 ORTHO05D008009 9.6e-80 301.2 218 70.2
Cfa006595 Carpinus fangiana HOM05D006420 ORTHO05D008009 1.3e-79 300.8 226 66.8
CiPaw.07G020700 Carya illinoinensis HOM05D006420 ORTHO05D008009 2.8e-79 299.7 214 67.8
RhsimUnG0226900 Rhododendron simsii HOM05D006420 ORTHO05D008009 4.8e-79 298.9 245 63.7
Dinv23938 Davidia involucrata HOM05D006420 ORTHO05D008009 9.0e-78 294.7 250 61.6
PGR083G0891 Punica granatum HOM05D006420 ORTHO05D008009 1.5e-77 293.9 246 60.2
THA.LOC104820863 Tarenaya hassleriana HOM05D006420 ORTHO05D008009 1.5e-77 293.9 228 62.7
GSVIVG01000081001 Vitis vinifera HOM05D006420 ORTHO05D008009 5.8e-77 292.0 245 62.9
Hund21694 Selenicereus undatus HOM05D006420 ORTHO05D008009 9.9e-77 291.2 231 65.4
TAR636G1821 Trochodendron aralioides HOM05D006420 ORTHO05D008009 1.7e-76 290.4 252 57.1
Ciclev10002177m.g Citrus clementina HOM05D006420 ORTHO05D008009 2.2e-76 290.0 226 65.0
Psat6g150480 Pisum sativum HOM05D006420 ORTHO05D008009 2.2e-76 290.0 242 60.7
AL1G65580 Arabidopsis lyrata HOM05D006420 ORTHO05D008009 2.9e-76 289.7 221 63.8
Lj9A85G78 Lonicera japonica HOM05D006420 ORTHO05D008009 2.9e-76 289.7 248 60.1
Carub.0002s0818 Capsella rubella HOM05D006420 ORTHO05D008009 3.8e-76 289.3 221 64.7
Lj9A86G16 Lonicera japonica HOM05D006420 ORTHO05D008009 4.9e-76 288.9 218 65.1
vmacro05011 Vaccinium macrocarpon HOM05D006420 ORTHO05D008009 4.9e-76 288.9 219 64.8
MSTRG.5100 Avicennia marina HOM05D006420 ORTHO05D008009 8.4e-76 288.1 239 58.2
BcaC06g31763 Brassica carinata HOM05D006420 ORTHO05D008009 8.4e-76 288.1 236 60.2
Ca_10114_v3 Cicer arietinum L. HOM05D006420 ORTHO05D008009 8.4e-76 288.1 230 62.6
FAN14G2531 Fragaria x ananassa HOM05D006420 ORTHO05D008009 2.4e-75 286.6 249 58.6
Prupe.6G324800 Prunus persica HOM05D006420 ORTHO05D008009 3.2e-75 286.2 237 61.2
AT1G55000 Arabidopsis thaliana HOM05D006420 ORTHO05D008009 4.2e-75 285.8 221 63.3
Thhalv10023646m.g Eutrema salsugineum HOM05D006420 ORTHO05D008009 4.2e-75 285.8 234 61.5
Nn4g26277 Nelumbo nucifera HOM05D006420 ORTHO05D008009 5.4e-75 285.4 218 64.7
SpUn0004_0090 Schrenkiella parvula HOM05D006420 ORTHO05D008009 5.4e-75 285.4 221 62.9
FvH4_6g06020 Fragaria vesca HOM05D006420 ORTHO05D008009 7.1e-75 285.0 235 60.0
FAN09G3808 Fragaria x ananassa HOM05D006420 ORTHO05D008009 7.1e-75 285.0 236 60.2
Aa31LG2G11700 Aethionema arabicum HOM05D006774 ORTHO05D008411 9.3e-75 284.6 234 60.3
RcHm_v2.0_Chr3g0454981 Rosa chinensis HOM05D006420 ORTHO05D008009 1.6e-74 283.9 228 61.4
Hma1.2p1_0928F.1_g237740 Hydrangea macrophylla HOM05D006420 ORTHO05D008009 2.1e-74 283.5 233 62.2
Atru.chr2.393 Acer truncatum HOM05D006420 ORTHO05D008009 2.7e-74 283.1 224 62.5
DCAR_029409 Daucus carota HOM05D006420 ORTHO05D008009 2.7e-74 283.1 218 64.2
Medtr1g082950 Medicago truncatula HOM05D006420 ORTHO05D008009 2.7e-74 283.1 223 62.8
MD12G1218500 Malus domestica HOM05D006420 ORTHO05D008009 4.6e-74 282.3 245 58.0
FAN02G2504 Fragaria x ananassa HOM05D006420 ORTHO05D008009 6.0e-74 282.0 228 60.5
Sed0005627 Sechium edule HOM05D006420 ORTHO05D008009 1.0e-73 281.2 248 58.9
CARHR287540 Cardamine hirsuta HOM05D006420 ORTHO05D008009 1.3e-73 280.8 221 62.4
A03p68650 Brassica napus HOM05D006420 ORTHO05D008009 2.3e-73 280.0 240 57.9
BraSC39t46193Z Brassica rapa HOM05D006420 ORTHO05D008009 2.3e-73 280.0 240 57.9
Lalb_Chr21g0310681 Lupinus albus HOM05D006420 ORTHO05D008009 2.3e-73 280.0 223 63.2
BcaC02g10755 Brassica carinata HOM05D006420 ORTHO05D008009 3.9e-73 279.3 240 58.3
C04p25420 Brassica napus HOM05D006420 ORTHO05D008009 3.9e-73 279.3 240 58.3
BolC4t24060H Brassica oleracea HOM05D006420 ORTHO05D008009 3.9e-73 279.3 240 58.3
Lsat_1_v5_gn_9_123421 Lactuca sativa HOM05D006420 ORTHO05D008009 5.1e-73 278.9 213 62.9
TPR.G6113 Trifolium pratense HOM05D006420 ORTHO05D008009 5.1e-73 278.9 223 61.9
MD04G1204800 Malus domestica HOM05D006420 ORTHO05D008009 6.7e-73 278.5 244 58.6
Phvul.007G179700 Phaseolus vulgaris HOM05D006420 ORTHO05D008009 8.7e-73 278.1 241 58.5
EL10Ac4g09358 Beta vulgaris HOM05D006420 ORTHO05D008009 1.1e-72 277.7 243 58.4
TAR365G0270 Trochodendron aralioides HOM05D006420 ORTHO05D008009 1.1e-72 277.7 212 63.7
arahy.Tifrunner.gnm1.ann1.GHU2GX Arachis hypogaea HOM05D006420 ORTHO05D008009 1.5e-72 277.3 220 63.2
FAN05G3282 Fragaria x ananassa HOM05D006420 ORTHO05D008009 1.5e-72 277.3 232 59.1
CANSAT54G1557 Cannabis sativa HOM05D006420 ORTHO05D008009 2.5e-72 276.6 253 55.7
TWI56G0424 Tripterygium wilfordii HOM05D006420 ORTHO05D008009 2.5e-72 276.6 245 60.0
Ah.04g160290 Amaranthus hybridus HOM05D006420 ORTHO05D008009 4.3e-72 275.8 214 65.9
CSS0034260 Camellia sinensis var. sinensis HOM05D006420 ORTHO05D008009 4.3e-72 275.8 219 62.6
Sc06g0003280 Simmondsia chinensis HOM05D006420 ORTHO05D008009 5.6e-72 275.4 218 62.8
Solyc01g099130.3 Solanum lycopersicum HOM05D006420 ORTHO05D008009 5.6e-72 275.4 241 57.3
Sopen01g042690 Solanum pennellii HOM05D006420 ORTHO05D008009 5.6e-72 275.4 224 61.2
PGSC0003DMG400024687 Solanum tuberosum HOM05D006420 ORTHO05D008009 5.6e-72 275.4 224 60.7
CAN.G1034.41 Capsicum annuum HOM05D006420 ORTHO05D008009 1.3e-71 274.2 241 56.8
Migut.N01987 Erythranthe guttata HOM05D006420 ORTHO05D008009 1.3e-71 274.2 212 62.7
Migut.N02012 Erythranthe guttata HOM05D006420 ORTHO05D008009 1.3e-71 274.2 212 62.7
PSO210G7816 Papaver somniferum HOM05D006420 ORTHO05D008009 1.3e-71 274.2 220 60.5
QL03p007116 Quercus lobata HOM05D006420 ORTHO05D008009 1.3e-71 274.2 256 57.4
arahy.Tifrunner.gnm1.ann1.7ESY4D Arachis hypogaea HOM05D006420 ORTHO05D008009 2.1e-71 273.5 220 62.3
Nitab4.5_0000137g0140 Nicotiana tabacum HOM05D006420 ORTHO05D008009 2.1e-71 273.5 215 62.3
CSS0037657 Camellia sinensis var. sinensis HOM05D006420 ORTHO05D008009 2.8e-71 273.1 219 62.1
Nn1g02269 Nelumbo nucifera HOM05D006420 ORTHO05D008009 2.8e-71 273.1 211 63.0
Lj5g0015213 Lotus japonicus HOM05D006420 ORTHO05D008009 4.8e-71 272.3 224 59.4
Cc02_g33350 Coffea canephora HOM05D006420 ORTHO05D008009 6.2e-71 271.9 218 62.4
Aqoxy5G00493 Aquilegia oxysepala HOM05D006420 ORTHO05D008009 8.1e-71 271.6 216 60.6
Glyma.10G154000 Glycine max HOM05D006420 ORTHO05D008009 8.1e-71 271.6 223 58.7
Glyma.20G234300 Glycine max HOM05D006420 ORTHO05D008009 1.1e-70 271.2 238 56.7
AUR62000819 Chenopodium quinoa HOM05D006420 ORTHO05D008009 1.8e-70 270.4 231 59.7
ClCG02G015760 Citrullus lanatus HOM05D006420 ORTHO05D008009 1.8e-70 270.4 242 58.3
Peaxi162Scf00037g00513 Petunia axillaris HOM05D006420 ORTHO05D008009 2.4e-70 270.0 216 61.1
VMungo0720G1765 Vigna mungo HOM05D006420 ORTHO05D008009 2.4e-70 270.0 223 59.2
CsaV3_2G005340 Cucumis sativus L. HOM05D006420 ORTHO05D008009 5.3e-70 268.9 253 56.5
FAN05G1000 Fragaria x ananassa HOM05D006420 ORTHO05D008009 6.9e-70 268.5 257 54.5
Oeu010909.1 Olea europaea HOM05D006420 ORTHO05D008009 2.6e-69 266.5 232 57.3
Potri.005G032100 Populus trichocarpa HOM05D006420 ORTHO05D008009 1.0e-68 264.6 164 78.7
Haze_04190 Corylus avellana HOM05D006420 ORTHO05D008009 1.3e-68 264.2 317 47.6
AUR62005152 Chenopodium quinoa HOM05D006420 ORTHO05D008009 4.9e-68 262.3 263 54.0
ECA232G4325 Erigeron canadensis HOM05D006420 ORTHO05D008009 2.1e-66 256.9 214 58.9
HanXRQChr16g0524621 Helianthus annuus HOM05D006420 ORTHO05D008009 5.7e-64 248.8 208 58.2
HPP92_020377 Vanilla planifolia HOM05D006420 ORTHO05D008009 1.6e-63 247.3 207 57.0
MBI04_g29616_MAGBIO Magnolia biondii HOM05D006420 ORTHO05D008009 1.2e-61 241.1 183 62.3
Zm00001eb054020 Zea mays HOM05D006420 ORTHO05D008009 1.7e-60 237.3 207 52.7
ATR0332G062 Amborella trichopoda HOM05D006420 ORTHO05D008009 1.6e-58 230.7 219 51.6
Os03g0699600 Oryza sativa ssp. japonica HOM05D006420 ORTHO05D008009 4.6e-58 229.2 207 50.7
Nitab4.5_0005541g0070 Nicotiana tabacum HOM05D006420 ORTHO05D008009 4.8e-55 219.2 247 48.2
MELO3C004253.2 Cucumis melo HOM05D000208 ORTHO05D000130 1.7e-52 210.7 195 56.9
SGA_v2.0_scaffold81G26063 Striga asiatica HOM05D006420 ORTHO05D000105 3.8e-52 209.5 431 33.9
Pp3c16_5370 Physcomitrium patens HOM05D006420 ORTHO05D008009 7.9e-50 201.8 224 47.8
SMO356G0643 Selaginella moellendorffii HOM05D006420 ORTHO05D008009 1.5e-45 187.6 200 46.5
Rhsim07G0185100 Rhododendron simsii HOM05D006420 ORTHO05D008009 2.1e-42 177.2 124 73.4
AagrBONN_evm.TU.Sc2ySwM_368.542 Anthoceros agrestis HOM05D006420 ORTHO05D008009 2.3e-41 173.7 210 41.4
MD10G1167700 Malus domestica HOM05D006420 ORTHO05D008009 1.1e-35 154.8 119 63.0
CDE02G2742 Ceratophyllum demersum HOM05D006420 ORTHO05D008009 3.2e-35 153.3 113 63.7
Sabra05G0034600 Salix brachista HOM05D006420 ORTHO05D008009 4.8e-31 139.4 130 58.5
Eucgr.B01859 Eucalyptus grandis HOM05D006420 ORTHO05D008009 9.1e-30 135.2 108 61.1
Eucgr.B01949 Eucalyptus grandis HOM05D006420 ORTHO05D008009 1.6e-29 134.4 112 59.8
QL03p007970 Quercus lobata HOM05D006420 ORTHO05D008009 7.7e-29 132.1 115 61.7
Eucgr.B01946 Eucalyptus grandis HOM05D006420 ORTHO05D008009 2.9e-28 130.2 105 60.0
QL03p007144 Quercus lobata HOM05D006420 ORTHO05D008009 8.5e-28 128.6 116 61.2
vmacro23281 Vaccinium macrocarpon HOM05D006420 ORTHO05D008009 6.8e-25 119.0 95 55.8
Cre16.g667100 Chlamydomonas reinhardtii HOM05D006420 ORTHO05D008009 1.7e-23 114.4 229 31.4
SEGI_28170 Sequoiadendron giganteum HOM05D006420 ORTHO05D008009 2.6e-16 90.5 82 54.9
vmacro23282 Vaccinium macrocarpon HOM05D006420 ORTHO05D008009 4.1e-14 83.2 103 50.5
QL03p007137 Quercus lobata HOM05D006420 ORTHO05D008009 1.0e-12 78.6 67 56.7
QL03p007977 Quercus lobata HOM05D006420 ORTHO05D008009 1.0e-12 78.6 67 56.7
Thhalv10024156m.g Eutrema salsugineum HOM05D006420 ORTHO05D008009 4.4e-08 63.2 86 39.5


User provided reference genes

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