Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Sabra13G0023200 Salix brachista HOM05D006315 ORTHO05D008052 1.0e-188 663.3 341 100.0
Potri.013G020800 Populus trichocarpa HOM05D006315 ORTHO05D008052 2.4e-174 615.5 341 93.8
Manes.09G167100 Manihot esculenta HOM05D006315 ORTHO05D008052 2.0e-141 506.1 345 77.4
Ciclev10001688m.g Citrus clementina HOM05D006315 ORTHO05D008052 1.5e-136 490.0 348 73.9
Prupe.6G325900 Prunus persica HOM05D006315 ORTHO05D008052 4.4e-136 488.4 352 73.9
Cfa006589 Carpinus fangiana HOM05D006315 ORTHO05D008052 5.4e-134 481.5 354 73.2
Gohir.D11G275200 Gossypium hirsutum HOM05D006315 ORTHO05D008052 2.7e-133 479.2 350 73.7
Gorai.007G297000 Gossypium raimondii HOM05D006315 ORTHO05D008052 2.7e-133 479.2 350 73.7
QL03p006996 Quercus lobata HOM05D006315 ORTHO05D008052 4.6e-133 478.4 345 73.6
Thecc.05G303200 Theobroma cacao HOM05D006315 ORTHO05D008052 4.6e-133 478.4 351 72.4
CiPaw.07G017800 Carya illinoinensis HOM05D006315 ORTHO05D008052 2.3e-132 476.1 348 72.1
TWI36G1375 Tripterygium wilfordii HOM05D006315 ORTHO05D008052 2.3e-132 476.1 355 71.0
Duzib128G1131 Durio zibethinus HOM05D006315 ORTHO05D008052 6.6e-132 474.6 351 72.9
COL.COLO4_13471 Corchorus olitorius HOM05D006315 ORTHO05D008052 1.1e-131 473.8 296 79.4
PGR083G2010 Punica granatum HOM05D006315 ORTHO05D008052 4.7e-130 468.4 350 72.0
CSS0039769 Camellia sinensis var. sinensis HOM05D006315 ORTHO05D008052 6.8e-129 464.5 353 70.5
RcHm_v2.0_Chr3g0454751 Rosa chinensis HOM05D006315 ORTHO05D008052 6.8e-129 464.5 347 68.9
FAN09G2245 Fragaria x ananassa HOM05D006315 ORTHO05D008052 1.2e-128 463.8 347 69.2
MD12G1219300 Malus domestica HOM05D006315 ORTHO05D008052 1.2e-128 463.8 350 70.0
RhsimUnG0225800 Rhododendron simsii HOM05D006315 ORTHO05D008052 7.6e-128 461.1 347 70.9
FAN02G1008 Fragaria x ananassa HOM05D006315 ORTHO05D008052 1.3e-127 460.3 347 67.7
GSVIVG01000051001 Vitis vinifera HOM05D006315 ORTHO05D008052 1.3e-127 460.3 355 69.9
Actinidia05703 Actinidia chinensis HOM05D006315 ORTHO05D008052 4.9e-127 458.4 352 69.0
FvH4_6g05840 Fragaria vesca HOM05D006315 ORTHO05D008052 1.1e-126 457.2 342 69.3
Nn6g32180 Nelumbo nucifera HOM05D006315 ORTHO05D008052 1.1e-126 457.2 347 70.6
Dinv40287 Davidia involucrata HOM05D006315 ORTHO05D008052 1.4e-126 456.8 327 74.3
AUR62000828 Chenopodium quinoa HOM05D006315 ORTHO05D008052 7.1e-126 454.5 347 69.7
FAN05G4943 Fragaria x ananassa HOM05D006315 ORTHO05D008052 1.6e-125 453.4 342 68.7
Eucgr.B01969 Eucalyptus grandis HOM05D006315 ORTHO05D008052 2.1e-125 453.0 355 68.2
SalBow8G0023 Salvia bowleyana HOM05D006315 ORTHO05D008052 6.0e-125 451.4 293 76.8
Oeu020852.1 Olea europaea HOM05D006315 ORTHO05D008052 7.8e-125 451.1 349 71.1
Cpa.g.sc48.53 Carica papaya HOM05D006315 ORTHO05D008052 1.0e-124 450.7 349 70.5
FAN14G3373 Fragaria x ananassa HOM05D006315 ORTHO05D008052 1.0e-124 450.7 349 67.9
FAN14G1304 Fragaria x ananassa HOM05D006315 ORTHO05D008052 1.3e-124 450.3 349 67.9
CAN.G1034.11 Capsicum annuum HOM05D006315 ORTHO05D008052 1.1e-123 447.2 331 72.5
Cc02_g33440 Coffea canephora HOM05D006315 ORTHO05D008052 1.1e-123 447.2 351 69.2
PGSC0003DMG400018995 Solanum tuberosum HOM05D006315 ORTHO05D008052 2.5e-123 446.0 324 72.5
vmacro05019 Vaccinium macrocarpon HOM05D006315 ORTHO05D008052 4.3e-123 445.3 255 83.9
Lalb_Chr02g0148251 Lupinus albus HOM05D006315 ORTHO05D008052 9.6e-123 444.1 337 69.1
Aqoxy6G00442 Aquilegia oxysepala HOM05D006315 ORTHO05D008052 2.1e-122 443.0 297 74.7
Sopen01g042560 Solanum pennellii HOM05D006315 ORTHO05D008052 1.1e-121 440.7 328 71.3
Nitab4.5_0004395g0040 Nicotiana tabacum HOM05D006315 ORTHO05D008052 1.4e-121 440.3 298 74.5
TAR381G0108 Trochodendron aralioides HOM05D006315 ORTHO05D008052 1.8e-121 439.9 316 71.2
THA.LOC104818698 Tarenaya hassleriana HOM05D006315 ORTHO05D008052 3.1e-121 439.1 333 70.6
ClCG02G015800 Citrullus lanatus HOM05D006315 ORTHO05D008052 8.9e-121 437.6 350 69.4
FAN05G5779 Fragaria x ananassa HOM05D006315 ORTHO05D008052 1.2e-120 437.2 362 64.4
Lsat_1_v5_gn_9_86000 Lactuca sativa HOM05D006315 ORTHO05D008052 1.2e-120 437.2 350 66.0
unitig_37.g12631 Utricularia gibba HOM05D006315 ORTHO05D008052 1.2e-120 437.2 295 76.3
DCAR_022164 Daucus carota HOM05D006315 ORTHO05D008052 1.5e-120 436.8 333 69.7
HanXRQChr02g0046151 Helianthus annuus HOM05D006315 ORTHO05D008052 1.5e-120 436.8 336 68.8
MSTRG.16964 Avicennia marina HOM05D006315 ORTHO05D008052 2.0e-120 436.4 320 70.9
ECA236G1566 Erigeron canadensis HOM05D006315 ORTHO05D008052 2.0e-120 436.4 287 74.6
arahy.Tifrunner.gnm1.ann1.9IE074 Arachis hypogaea HOM05D006315 ORTHO05D008052 3.4e-120 435.6 342 66.1
Aa31LG11G9300 Aethionema arabicum HOM05D006315 ORTHO05D008052 4.4e-120 435.3 345 66.7
AUR62005146 Chenopodium quinoa HOM05D006315 ORTHO05D008052 4.4e-120 435.3 382 62.3
CsaV3_2G005300 Cucumis sativus L. HOM05D006315 ORTHO05D008052 4.4e-120 435.3 347 68.6
Thhalv10004542m.g Eutrema salsugineum HOM05D006315 ORTHO05D008052 2.2e-119 433.0 343 63.8
Sp2g20750 Schrenkiella parvula HOM05D006315 ORTHO05D008052 2.9e-119 432.6 344 64.8
Sc06g0003310 Simmondsia chinensis HOM05D006315 ORTHO05D008052 4.9e-119 431.8 357 65.3
AL6G39450 Arabidopsis lyrata HOM05D006315 ORTHO05D008052 1.1e-118 430.6 343 64.4
PSO675G8687 Papaver somniferum HOM05D006315 ORTHO05D008052 2.4e-118 429.5 357 66.4
Peaxi162Scf00037g00325 Petunia axillaris HOM05D006315 ORTHO05D008052 3.2e-118 429.1 343 67.1
Phvul.007G180000 Phaseolus vulgaris HOM05D006315 ORTHO05D008052 9.3e-118 427.6 345 66.7
Ah.06g189370 Amaranthus hybridus HOM05D006315 ORTHO05D008052 1.6e-117 426.8 320 71.6
Glyma.10G154300 Glycine max HOM05D006315 ORTHO05D008052 2.7e-117 426.0 347 65.1
A09p05350 Brassica napus HOM05D006315 ORTHO05D008052 3.5e-117 425.6 341 64.5
BraA09t36173Z Brassica rapa HOM05D006315 ORTHO05D008052 3.5e-117 425.6 341 64.5
CARHR186120 Cardamine hirsuta HOM05D006315 ORTHO05D008052 4.6e-117 425.2 344 63.7
MBI01_g44539_MAGBIO Magnolia biondii HOM05D006315 ORTHO05D008052 7.8e-117 424.5 255 82.0
C09p05830 Brassica napus HOM05D006315 ORTHO05D008052 1.3e-116 423.7 341 64.2
BolC9t53510H Brassica oleracea HOM05D006315 ORTHO05D008052 1.3e-116 423.7 341 64.2
ATR1120G073 Amborella trichopoda HOM05D006315 ORTHO05D008052 2.3e-116 422.9 258 79.8
Migut.B01035 Erythranthe guttata HOM05D006315 ORTHO05D008052 2.3e-116 422.9 341 67.4
Carub.0006s2500 Capsella rubella HOM05D006315 ORTHO05D008052 3.0e-116 422.5 336 65.2
VMungo0720G2927 Vigna mungo HOM05D006315 ORTHO05D008052 1.1e-115 420.6 345 65.2
AT5G27560 Arabidopsis thaliana HOM05D006315 ORTHO05D008052 5.6e-115 418.3 345 64.6
Lj5g0002172 Lotus japonicus HOM05D006315 ORTHO05D008052 5.6e-115 418.3 346 64.7
Ca_10111_v3 Cicer arietinum L. HOM05D006315 ORTHO05D008052 1.6e-114 416.8 317 67.8
Psat6g151200 Pisum sativum HOM05D006315 ORTHO05D008052 1.8e-113 413.3 343 65.0
Sed0013855 Sechium edule HOM05D006315 ORTHO05D008052 3.1e-113 412.5 352 65.1
Medtr1g082900 Medicago truncatula HOM05D006315 ORTHO05D008052 6.9e-113 411.4 323 67.2
TPR.G6112 Trifolium pratense HOM05D006315 ORTHO05D008052 1.2e-112 410.6 336 64.0
Glyma.20G234000 Glycine max HOM05D006315 ORTHO05D008052 2.0e-112 409.8 346 63.9
Hund07070 Selenicereus undatus HOM05D006315 ORTHO05D008052 4.4e-112 408.7 333 67.0
Gohir.A11G265000 Gossypium hirsutum HOM05D006315 ORTHO05D008052 9.3e-110 401.0 229 83.4
CDE06G2073 Ceratophyllum demersum HOM05D006315 ORTHO05D008052 1.6e-109 400.2 334 64.7
PSO541G4223 Papaver somniferum HOM05D006315 ORTHO05D008052 2.1e-109 399.8 334 65.3
SGA_v2.0_scaffold13G06358 Striga asiatica HOM05D006315 ORTHO05D008052 3.5e-109 399.1 311 67.8
MELO3C004257.2 Cucumis melo HOM05D006315 ORTHO05D008052 2.3e-108 396.4 313 68.4
Atru.chr2.406 Acer truncatum HOM05D006315 ORTHO05D008052 2.4e-105 386.3 353 63.2
Solyc01g098990.4 Solanum lycopersicum HOM05D006315 ORTHO05D008052 1.7e-103 380.2 327 63.6
Haze_04196 Corylus avellana HOM05D006315 ORTHO05D008052 2.9e-103 379.4 304 68.8
EL10Ac4g09351 Beta vulgaris HOM05D006315 ORTHO05D008052 2.7e-93 346.3 324 63.0
SEGI_29864 Sequoiadendron giganteum HOM05D006315 ORTHO05D008052 2.3e-92 343.2 334 54.2
arahy.Tifrunner.gnm1.ann1.SMKB8G Arachis hypogaea HOM05D006315 ORTHO05D008052 1.7e-87 327.0 352 54.3
AagrBONN_evm.TU.Sc2ySwM_368.1535 Anthoceros agrestis HOM05D006315 ORTHO05D008052 7.4e-83 311.6 291 54.6
Zm00001eb377150 Zea mays HOM05D006315 ORTHO05D008052 2.8e-82 309.7 255 62.7
Mapoly0046s0092 Marchantia polymorpha HOM05D006315 ORTHO05D008052 1.3e-79 300.8 354 47.7
Nitab4.5_0000137g0320 Nicotiana tabacum HOM05D006315 ORTHO05D008052 4.4e-75 285.8 173 78.0
Lj5A533G15 Lonicera japonica HOM05D006315 ORTHO05D008052 7.4e-75 285.0 163 84.0
Pp3c1_23410 Physcomitrium patens HOM05D006315 ORTHO05D008052 3.7e-74 282.7 300 48.7
Eucgr.B01970 Eucalyptus grandis HOM05D006315 ORTHO05D008052 2.8e-66 256.5 187 65.2
SMO116G0320 Selaginella moellendorffii HOM05D006315 ORTHO05D008052 3.8e-63 246.1 224 52.2
Eucgr.B01875 Eucalyptus grandis HOM05D006315 ORTHO05D008052 1.1e-62 244.6 144 78.5
Actinidia23634 Actinidia chinensis HOM05D006315 ORTHO05D008052 1.4e-52 211.1 132 81.1
HPP92_002820 Vanilla planifolia HOM05D006315 ORTHO05D008052 8.8e-52 208.4 226 56.2
Lj5C470G0 Lonicera japonica HOM05D006315 ORTHO05D008052 3.4e-51 206.5 167 68.3
Lj5C532G5 Lonicera japonica HOM05D006315 ORTHO05D008052 3.4e-51 206.5 167 68.3
HPP92_002878 Vanilla planifolia HOM05D006315 ORTHO05D008052 3.5e-48 196.4 132 73.5
Cre17.g739550 Chlamydomonas reinhardtii HOM05D006315 ORTHO05D008052 1.3e-42 177.9 357 33.1
MCO15G525 Micromonas commoda HOM05D006315 ORTHO05D008052 1.9e-38 164.1 344 31.7
Hma1.2p1_0928F.1_g237790 Hydrangea macrophylla HOM05D006315 ORTHO05D008052 2.7e-32 143.7 158 59.5
PRCOL_00006277 Prasinoderma coloniale HOM05D006315 ORTHO05D008052 2.3e-31 140.6 238 35.7
EL10As4g23462 Beta vulgaris HOM05D006315 ORTHO05D008052 1.9e-30 137.5 107 70.1
Lj5P531T4 Lonicera japonica HOM05D006315 ORTHO05D008052 3.9e-23 113.2 83 63.9
Aa31LG11G9280 Aethionema arabicum HOM05D006315 ORTHO05D059511 1.4e-20 104.8 92 59.8
Lj5A532G12 Lonicera japonica HOM05D006315 ORTHO05D008052 2.3e-20 104.0 201 36.8
Lj5P469T8 Lonicera japonica HOM05D006315 ORTHO05D008052 4.4e-19 99.8 53 84.9
arahy.Tifrunner.gnm1.ann1.T3AGRQ Arachis hypogaea HOM05D006315 ORTHO05D008052 1.0e-15 88.6 65 56.9
Lj5A470G9 Lonicera japonica HOM05D006315 ORTHO05D008052 1.7e-10 71.2 129 34.9
EL10Ac4g09000 Beta vulgaris HOM05D006315 ORTHO05D008052 2.2e-10 70.9 38 86.8
BolC7t42010H Brassica oleracea HOM05D004896 ORTHO05D028223 1.9e-09 67.8 138 40.6
Lj5A532G11 Lonicera japonica HOM05D006315 ORTHO05D008052 5.4e-09 66.2 129 33.3
CSS0026722 Camellia sinensis var. sinensis HOM05D001207 ORTHO05D009015 2.3e-07 60.8 261 26.4
Migut.K00366 Erythranthe guttata HOM05D001207 ORTHO05D009015 2.3e-07 60.8 255 26.3
CSS0029501 Camellia sinensis var. sinensis HOM05D001207 ORTHO05D009015 8.6e-07 58.9 260 26.5
C09p41080 Brassica napus HOM05D004896 ORTHO05D028223 1.5e-06 58.2 79 44.3
BolC9t56987H Brassica oleracea HOM05D004896 ORTHO05D028223 1.5e-06 58.2 79 44.3
Os08g0288200 Oryza sativa ssp. japonica HOM05D001207 ORTHO05D009015 1.9e-06 57.8 168 27.4
EL10Ac5g11946 Beta vulgaris HOM05D001237 ORTHO05D009110 7.3e-06 55.8 254 24.4
PGR042G3955 Punica granatum HOM05D001237 ORTHO05D009110 7.3e-06 55.8 256 25.0


User provided reference genes

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