Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Sabra13G0006500 Salix brachista HOM05D004470 ORTHO05D005079 2.3e-60 235.3 118 100.0
Potri.013G007600 Populus trichocarpa HOM05D004470 ORTHO05D005079 4.9e-58 227.6 118 95.8
Sabra05G0020100 Salix brachista HOM05D004470 ORTHO05D005079 9.5e-54 213.4 116 91.4
Potri.005G011800 Populus trichocarpa HOM05D004470 ORTHO05D005079 1.6e-53 212.6 118 89.0
Sabra05G0008600 Salix brachista HOM05D004470 ORTHO05D005079 1.0e-47 193.4 157 67.5
Manes.08G110300 Manihot esculenta HOM05D004470 ORTHO05D005079 7.5e-43 177.2 116 81.9
Haze_04037 Corylus avellana HOM05D004470 ORTHO05D005079 9.8e-43 176.8 114 81.6
QL03p015399 Quercus lobata HOM05D004470 ORTHO05D005079 9.8e-43 176.8 114 80.7
CANSAT56G4147 Cannabis sativa HOM05D004470 ORTHO05D005079 1.3e-42 176.4 115 77.4
Manes.09G177800 Manihot esculenta HOM05D004470 ORTHO05D005079 2.2e-42 175.6 116 81.0
Sopen01g044200 Solanum pennellii HOM05D004470 ORTHO05D005079 4.9e-42 174.5 114 76.3
TWI36G1558 Tripterygium wilfordii HOM05D004470 ORTHO05D005079 6.4e-42 174.1 114 77.2
CiPaw.08G154600 Carya illinoinensis HOM05D004470 ORTHO05D005079 1.1e-41 173.3 114 79.8
PGSC0003DMG400002761 Solanum tuberosum HOM05D004470 ORTHO05D005079 1.1e-41 173.3 114 75.4
CSS0034232 Camellia sinensis var. sinensis HOM05D004470 ORTHO05D005079 5.4e-41 171.0 114 77.2
Nitab4.5_0010074g0010 Nicotiana tabacum HOM05D004470 ORTHO05D005079 5.4e-41 171.0 114 73.7
Hma1.2p1_0052F.1_g030690 Hydrangea macrophylla HOM05D004470 ORTHO05D005079 1.6e-40 169.5 114 74.6
Nitab4.5_0001338g0040 Nicotiana tabacum HOM05D004470 ORTHO05D005079 2.1e-40 169.1 114 72.8
TWI34G1281 Tripterygium wilfordii HOM05D004470 ORTHO05D005079 2.1e-40 169.1 114 74.6
CiPaw.07G030800 Carya illinoinensis HOM05D004470 ORTHO05D005079 2.7e-40 168.7 114 78.9
TAR362G0763 Trochodendron aralioides HOM05D004470 ORTHO05D005079 2.7e-40 168.7 116 71.6
Peaxi162Scf00357g00829 Petunia axillaris HOM05D004470 ORTHO05D005079 6.0e-40 167.5 114 73.7
TWI63G0379 Tripterygium wilfordii HOM05D004470 ORTHO05D005079 7.8e-40 167.2 114 72.8
CANSAT54G2827 Cannabis sativa HOM05D004470 ORTHO05D005079 3.9e-39 164.9 114 73.7
Duzib128G0232 Durio zibethinus HOM05D004470 ORTHO05D005079 3.9e-39 164.9 115 75.7
CAN.G1076.31 Capsicum annuum HOM05D004470 ORTHO05D005079 6.6e-39 164.1 115 74.8
PGR031G2302 Punica granatum HOM05D004470 ORTHO05D005079 1.1e-38 163.3 119 72.3
Thecc.05G324600 Theobroma cacao HOM05D004470 ORTHO05D005079 1.9e-38 162.5 115 73.9
COL.COLO4_05537 Corchorus olitorius HOM05D004470 ORTHO05D005079 2.5e-38 162.2 115 75.7
Hma1.2p1_0008F-1.1_g005470 Hydrangea macrophylla HOM05D004470 ORTHO05D005079 2.5e-38 162.2 114 71.1
SGA_v2.0_scaffold37G14596 Striga asiatica HOM05D004470 ORTHO05D005079 2.5e-38 162.2 114 71.1
Atru.chr1.2932 Acer truncatum HOM05D004470 ORTHO05D005079 3.3e-38 161.8 114 75.4
Gohir.A08G205100 Gossypium hirsutum HOM05D004470 ORTHO05D005079 7.3e-38 160.6 114 75.4
Gohir.D08G222200 Gossypium hirsutum HOM05D004470 ORTHO05D005079 7.3e-38 160.6 114 75.4
Gorai.004G236000 Gossypium raimondii HOM05D004470 ORTHO05D005079 7.3e-38 160.6 114 75.4
Cfa006723 Carpinus fangiana HOM05D004470 ORTHO05D005079 9.5e-38 160.2 111 76.6
Prupe.3G062500 Prunus persica HOM05D004470 ORTHO05D005079 1.2e-37 159.8 114 73.7
Sed0027904 Sechium edule HOM05D004470 ORTHO05D005079 1.6e-37 159.5 114 72.8
arahy.Tifrunner.gnm1.ann1.IGN13F Arachis hypogaea HOM05D004470 ORTHO05D005079 2.1e-37 159.1 116 70.7
CsaV3_1G037920 Cucumis sativus L. HOM05D004470 ORTHO05D005079 2.1e-37 159.1 114 71.1
Duzib106G0025 Durio zibethinus HOM05D004470 ORTHO05D005079 3.6e-37 158.3 115 73.9
Nn3g21765 Nelumbo nucifera HOM05D004470 ORTHO05D005079 3.6e-37 158.3 118 69.5
Ciclev10002908m.g Citrus clementina HOM05D004470 ORTHO05D005079 6.2e-37 157.5 115 69.6
Dinv30905 Davidia involucrata HOM05D004470 ORTHO05D005079 8.1e-37 157.1 114 68.4
Lj6g0017458 Lotus japonicus HOM05D004470 ORTHO05D005079 8.1e-37 157.1 114 71.1
MELO3C015252.2 Cucumis melo HOM05D004470 ORTHO05D005079 1.4e-36 156.4 114 70.2
Nitab4.5_0001255g0050 Nicotiana tabacum HOM05D004470 ORTHO05D005079 1.4e-36 156.4 142 59.9
Phvul.007G202300 Phaseolus vulgaris HOM05D004470 ORTHO05D005079 1.4e-36 156.4 118 72.0
TPR.G34849 Trifolium pratense HOM05D004470 ORTHO05D005079 1.4e-36 156.4 93 83.9
Glyma.20G096000 Glycine max HOM05D004470 ORTHO05D005079 2.3e-36 155.6 114 70.2
Sc16g0009110 Simmondsia chinensis HOM05D004470 ORTHO05D005079 2.3e-36 155.6 112 73.2
Eucgr.A00650 Eucalyptus grandis HOM05D004470 ORTHO05D005079 4.0e-36 154.8 121 69.4
FAN02G2550 Fragaria x ananassa HOM05D004470 ORTHO05D005079 5.2e-36 154.5 114 71.9
MD10G1090000 Malus domestica HOM05D004470 ORTHO05D005079 5.2e-36 154.5 91 81.3
RcHm_v2.0_Chr2g0139741 Rosa chinensis HOM05D004470 ORTHO05D005079 5.2e-36 154.5 114 71.9
GSVIVG01031257001 Vitis vinifera HOM05D004470 ORTHO05D005079 5.2e-36 154.5 90 81.1
TPR.G29395 Trifolium pratense HOM05D004470 ORTHO05D005079 8.9e-36 153.7 87 86.2
SalBow5G0245 Salvia bowleyana HOM05D004470 ORTHO05D005079 1.2e-35 153.3 112 67.9
FAN05G2322 Fragaria x ananassa HOM05D004470 ORTHO05D005079 2.0e-35 152.5 114 71.1
FAN14G0179 Fragaria x ananassa HOM05D004470 ORTHO05D005079 2.0e-35 152.5 114 71.1
Lalb_Chr02g0147721 Lupinus albus HOM05D004470 ORTHO05D005079 2.0e-35 152.5 116 69.8
Medtr2g023920 Medicago truncatula HOM05D004470 ORTHO05D005079 2.0e-35 152.5 87 85.1
FAN09G3660 Fragaria x ananassa HOM05D004470 ORTHO05D005079 2.6e-35 152.1 114 70.2
Aqoxy2G02663 Aquilegia oxysepala HOM05D004470 ORTHO05D005079 4.4e-35 151.4 116 68.1
CDE02G2719 Ceratophyllum demersum HOM05D004470 ORTHO05D005079 4.4e-35 151.4 109 67.9
CDE09G1304 Ceratophyllum demersum HOM05D004470 ORTHO05D005079 4.4e-35 151.4 109 67.9
Eucgr.H03299 Eucalyptus grandis HOM05D004470 ORTHO05D005079 4.4e-35 151.4 116 70.7
arahy.Tifrunner.gnm1.ann1.3R4C35 Arachis hypogaea HOM05D004470 ORTHO05D005079 5.8e-35 151.0 117 67.5
arahy.Tifrunner.gnm1.ann1.44SN5D Arachis hypogaea HOM05D004470 ORTHO05D005079 5.8e-35 151.0 86 84.9
Psat1g179040 Pisum sativum HOM05D004470 ORTHO05D005079 7.6e-35 150.6 99 78.8
Actinidia35512 Actinidia chinensis HOM05D004470 ORTHO05D005079 9.9e-35 150.2 90 80.0
AT3G05810 Arabidopsis thaliana HOM05D004470 ORTHO05D005079 1.3e-34 149.8 114 63.2
Carub.0003s0517 Capsella rubella HOM05D004470 ORTHO05D005079 1.7e-34 149.4 114 63.2
Oeu000058.1 Olea europaea HOM05D004470 ORTHO05D005079 1.7e-34 149.4 114 65.8
Migut.N00943 Erythranthe guttata HOM05D004470 ORTHO05D005079 2.2e-34 149.1 114 66.7
Prupe.2G047800 Prunus persica HOM05D004470 ORTHO05D005079 2.2e-34 149.1 114 67.5
MSTRG.5145 Avicennia marina HOM05D004470 ORTHO05D005079 3.8e-34 148.3 116 64.7
BolC9t53546H Brassica oleracea HOM05D004470 ORTHO05D005079 3.8e-34 148.3 114 64.9
CARHR186760 Cardamine hirsuta HOM05D004470 ORTHO05D005079 3.8e-34 148.3 114 64.9
Glyma.10G146200 Glycine max HOM05D004470 ORTHO05D005079 3.8e-34 148.3 117 68.4
THA.LOC104802774 Tarenaya hassleriana HOM05D004470 ORTHO05D005079 3.8e-34 148.3 114 66.7
Ah.06g196140 Amaranthus hybridus HOM05D004470 ORTHO05D005079 4.9e-34 147.9 115 69.6
BraA09t36207Z Brassica rapa HOM05D004470 ORTHO05D005079 4.9e-34 147.9 114 64.9
C09p06260 Brassica napus HOM05D004470 ORTHO05D005079 6.4e-34 147.5 114 64.9
MD07G1055000 Malus domestica HOM05D004470 ORTHO05D005079 6.4e-34 147.5 91 76.9
A09p05650 Brassica napus HOM05D004470 ORTHO05D005079 8.4e-34 147.1 114 64.9
AUR62006764 Chenopodium quinoa HOM05D004470 ORTHO05D005079 8.4e-34 147.1 117 68.4
Ah.16g100620 Amaranthus hybridus HOM05D004470 ORTHO05D005079 1.1e-33 146.7 115 68.7
BcaC04g23637 Brassica carinata HOM05D004470 ORTHO05D005079 1.1e-33 146.7 114 64.0
Aa31LG5G16190 Aethionema arabicum HOM05D004470 ORTHO05D005079 1.4e-33 146.4 114 67.5
AL6G38670 Arabidopsis lyrata HOM05D004470 ORTHO05D005079 1.4e-33 146.4 114 62.3
Hund07308 Selenicereus undatus HOM05D004470 ORTHO05D005079 1.4e-33 146.4 116 69.0
SGA_v2.0_scaffold5G02899 Striga asiatica HOM05D004470 ORTHO05D005079 1.4e-33 146.4 116 64.7
BcaNung03672 Brassica carinata HOM05D004470 ORTHO05D005079 1.9e-33 146.0 114 64.0
CARHR080260 Cardamine hirsuta HOM05D004470 ORTHO05D005079 3.2e-33 145.2 114 61.4
ATR0693G181 Amborella trichopoda HOM05D004470 ORTHO05D005079 4.1e-33 144.8 90 78.9
BraA06t26628Z Brassica rapa HOM05D004470 ORTHO05D005079 5.4e-33 144.4 114 64.9
Ca_10181_v3 Cicer arietinum L. HOM05D004470 ORTHO05D005079 5.4e-33 144.4 118 67.8
ClCG03G017770 Citrullus lanatus HOM05D004470 ORTHO05D005079 5.4e-33 144.4 148 54.7
AL3G16550 Arabidopsis lyrata HOM05D004470 ORTHO05D005079 7.1e-33 144.1 114 61.4
BcaNung03915 Brassica carinata HOM05D004470 ORTHO05D005079 7.1e-33 144.1 114 64.0
BolC7t44679H Brassica oleracea HOM05D004470 ORTHO05D005079 9.2e-33 143.7 114 63.2
PSO675G4687 Papaver somniferum HOM05D004470 ORTHO05D005079 9.2e-33 143.7 99 71.7
EL10Ac4g09488 Beta vulgaris HOM05D004470 ORTHO05D005079 1.2e-32 143.3 115 67.8
PSO339G4842 Papaver somniferum HOM05D004470 ORTHO05D005079 1.2e-32 143.3 108 71.3
BcaB04g19711 Brassica carinata HOM05D004470 ORTHO05D005079 2.1e-32 142.5 114 63.2
A06p37040 Brassica napus HOM05D004470 ORTHO05D005079 2.7e-32 142.1 114 66.7
PSO513G0108 Papaver somniferum HOM05D004470 ORTHO05D005079 3.5e-32 141.7 116 65.5
Sp2g21200 Schrenkiella parvula HOM05D004470 ORTHO05D005079 3.5e-32 141.7 114 63.2
PSO541G1615 Papaver somniferum HOM05D004470 ORTHO05D005079 6.0e-32 141.0 99 70.7
Sp3g04670 Schrenkiella parvula HOM05D004470 ORTHO05D005079 1.0e-31 140.2 114 61.4
THA.LOC104821881 Tarenaya hassleriana HOM05D004470 ORTHO05D005079 1.0e-31 140.2 97 70.1
Cc02_g35220 Coffea canephora HOM05D004470 ORTHO05D005079 3.9e-31 138.3 116 62.1
MBI18_g35544_MAGBIO Magnolia biondii HOM05D004470 ORTHO05D005079 3.9e-31 138.3 117 60.7
Nn4g25533 Nelumbo nucifera HOM05D004470 ORTHO05D005079 3.3e-30 135.2 164 50.0
DCAR_025290 Daucus carota HOM05D004470 ORTHO05D005079 4.3e-30 134.8 117 63.2
Carub.0006s2445 Capsella rubella HOM05D004470 ORTHO05D005079 5.6e-30 134.4 115 58.3
Thhalv10021798m.g Eutrema salsugineum HOM05D004470 ORTHO05D005079 7.3e-30 134.0 113 59.3
Hund21865 Selenicereus undatus HOM05D004470 ORTHO05D005079 4.0e-28 128.3 94 70.2
HPP92_027934 Vanilla planifolia HOM05D004470 ORTHO05D005079 1.2e-27 126.7 112 57.1
HPP92_002708 Vanilla planifolia HOM05D004470 ORTHO05D005079 1.3e-26 123.2 96 62.5
Lsat_1_v5_gn_2_67201 Lactuca sativa HOM05D004470 ORTHO05D005079 1.7e-26 122.9 119 56.3
HPP92_002665 Vanilla planifolia HOM05D004470 ORTHO05D005079 2.2e-26 122.5 112 56.2
FAN26G0538 Fragaria x ananassa HOM05D004470 ORTHO05D005079 1.4e-25 119.8 113 60.2
MD15G1427600 Malus domestica HOM05D004470 ORTHO05D005079 7.1e-25 117.5 77 74.0
HanXRQChr14g0445721 Helianthus annuus HOM05D004470 ORTHO05D005079 9.3e-25 117.1 118 53.4
Lju926A3T37 Lonicera japonica HOM05D004470 ORTHO05D005079 1.6e-24 116.3 90 65.6
ECA238G3981 Erigeron canadensis HOM05D004470 ORTHO05D005079 2.1e-24 115.9 119 54.6
Rhsim11G0097400 Rhododendron simsii HOM05D004470 ORTHO05D005079 3.5e-24 115.2 212 37.7
Zm00001eb130040 Zea mays HOM05D004470 ORTHO05D005079 4.6e-24 114.8 80 67.5
Os01g0299400 Oryza sativa ssp. japonica HOM05D004470 ORTHO05D005079 6.0e-24 114.4 83 66.3
FAN28G2801 Fragaria x ananassa HOM05D004470 ORTHO05D005079 1.3e-23 113.2 112 58.9
VMungo0720G0966 Vigna mungo HOM05D004470 ORTHO05D005079 1.3e-23 113.2 98 68.4
Zm00001eb340410 Zea mays HOM05D004470 ORTHO05D005079 1.7e-23 112.8 77 68.8
Os10g0150200 Oryza sativa ssp. japonica HOM05D004470 ORTHO05D005079 5.1e-23 111.3 80 66.2
FvH4_6g32060 Fragaria vesca HOM05D004470 ORTHO05D005079 6.6e-23 110.9 89 69.7
vmacro01577 Vaccinium macrocarpon HOM05D004470 ORTHO05D005079 7.3e-22 107.5 108 58.3
Thhalv10026672m.g Eutrema salsugineum HOM05D004470 ORTHO05D005079 1.3e-21 106.7 94 60.6
Aa31LG1G17020 Aethionema arabicum HOM05D004470 ORTHO05D005079 8.1e-21 104.0 82 65.9
DCAR_002036 Daucus carota HOM05D004470 ORTHO05D005079 1.4e-20 103.2 88 62.5
AUR62000416 Chenopodium quinoa HOM05D004470 ORTHO05D005079 2.4e-20 102.4 92 64.1
Sc18g0006160 Simmondsia chinensis HOM05D004470 ORTHO05D005079 1.5e-19 99.8 89 60.7
unitig_37.g12917 Utricularia gibba HOM05D004470 ORTHO05D005079 1.5e-19 99.8 94 54.3
Mapoly0164s0021 Marchantia polymorpha HOM05D004470 ORTHO05D005079 3.2e-17 92.0 69 60.9
Rhsim05G0127900 Rhododendron simsii HOM05D004470 ORTHO05D005079 7.1e-17 90.9 52 80.8
BcaC03g17832 Brassica carinata HOM05D004470 ORTHO05D005079 1.2e-16 90.1 76 56.6
BcaNung06220 Brassica carinata HOM05D004470 ORTHO05D005079 1.2e-16 90.1 76 56.6
C02p58610 Brassica napus HOM05D004470 ORTHO05D005079 1.6e-16 89.7 73 60.3
AagrBONN_evm.TU.Sc2ySwM_228.963 Anthoceros agrestis HOM05D004470 ORTHO05D005079 3.5e-16 88.6 97 47.4
Eucgr.H03248 Eucalyptus grandis HOM05D004470 ORTHO05D005079 6.0e-16 87.8 60 75.0
Cpa.g.sc48.175 Carica papaya HOM05D004470 ORTHO05D005079 1.5e-14 83.2 63 68.3
HanXRQChr15g0471581 Helianthus annuus HOM05D004470 ORTHO05D005079 5.6e-14 81.3 85 54.1
vmacro19787 Vaccinium macrocarpon HOM05D000003 ORTHO05D005079 4.8e-13 78.2 71 57.7
Pp3c6_8090 Physcomitrium patens HOM05D004470 ORTHO05D005079 1.4e-12 76.6 68 51.5
SHI42436 Sapria himalayana HOM05D004470 ORTHO05D005079 1.8e-12 76.3 55 67.3
SEGI_31285 Sequoiadendron giganteum HOM05D004470 ORTHO05D005079 4.0e-12 75.1 56 62.5
AUR62036369 Chenopodium quinoa HOM05D004470 ORTHO05D005079 1.5e-11 73.2 46 78.3
AUR62033672 Chenopodium quinoa HOM05D004470 ORTHO05D005079 3.2e-09 65.5 82 47.6
A02p39020 Brassica napus HOM05D004470 ORTHO05D005079 1.2e-08 63.5 62 54.8
BolC2t11922H Brassica oleracea HOM05D004470 ORTHO05D005079 4.6e-08 61.6 71 45.1
SMO195G0040 Selaginella moellendorffii HOM05D000001 ORTHO05D005079 1.0e-07 60.5 75 44.0
SMO116G0179 Selaginella moellendorffii HOM05D004470 ORTHO05D005079 1.8e-07 59.7 65 44.6
FAN28G0201 Fragaria x ananassa HOM05D004470 ORTHO05D005079 3.9e-07 58.5 47 70.2


User provided reference genes

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