Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Sabra13G0001500 Salix brachista HOM05D005826 ORTHO05D004357 1.7e-143 513.1 343 100.0
GSVIVG01031331001 Vitis vinifera HOM05D005826 ORTHO05D004357 4.2e-86 322.4 355 60.3
CiPaw.07G036400 Carya illinoinensis HOM05D005826 ORTHO05D004357 8.0e-85 318.2 343 65.3
Manes.08G107500 Manihot esculenta HOM05D005826 ORTHO05D004357 1.8e-84 317.0 343 61.8
Atru.chr12.1539 Acer truncatum HOM05D005826 ORTHO05D004357 1.1e-83 314.3 341 64.8
Dinv30950 Davidia involucrata HOM05D005826 ORTHO05D004357 2.6e-83 313.2 341 63.0
TWI12G0016 Tripterygium wilfordii HOM05D005826 ORTHO05D004357 3.3e-83 312.8 299 68.9
Cfa006771 Carpinus fangiana HOM05D005826 ORTHO05D004357 2.8e-82 309.7 343 60.9
CANSAT54G1651 Cannabis sativa HOM05D005826 ORTHO05D004357 3.7e-82 309.3 346 63.6
Phvul.001G222000 Phaseolus vulgaris HOM05D005826 ORTHO05D004357 3.7e-82 309.3 341 61.9
VMungo1383G1915 Vigna mungo HOM05D005826 ORTHO05D004357 8.2e-82 308.1 341 56.3
COL.COLO4_05485 Corchorus olitorius HOM05D005826 ORTHO05D004357 1.4e-81 307.4 341 59.8
Hma1.2p1_0052F.1_g030400 Hydrangea macrophylla HOM05D005826 ORTHO05D004357 1.8e-81 307.0 297 68.4
Ciclev10012662m.g Citrus clementina HOM05D005826 ORTHO05D004357 1.2e-80 304.3 351 60.7
Thecc.05G329600 Theobroma cacao HOM05D005826 ORTHO05D004357 1.6e-80 303.9 341 61.6
Actinidia17738 Actinidia chinensis HOM05D005826 ORTHO05D004357 4.5e-80 302.4 347 63.7
Rhsim11G0105000 Rhododendron simsii HOM05D005826 ORTHO05D004357 4.5e-80 302.4 319 67.4
Solyc01g101250.3 Solanum lycopersicum HOM05D005826 ORTHO05D004357 5.9e-80 302.0 296 66.2
Manes.09G181300 Manihot esculenta HOM05D005826 ORTHO05D004357 1.3e-79 300.8 343 63.3
Potri.005G002700 Populus trichocarpa HOM05D005826 ORTHO05D004357 1.3e-79 300.8 343 67.3
Hund07271 Selenicereus undatus HOM05D005826 ORTHO05D004357 1.3e-79 300.8 298 64.8
Sopen01g044700 Solanum pennellii HOM05D005826 ORTHO05D004357 1.7e-79 300.4 341 59.2
AUR62000478 Chenopodium quinoa HOM05D005826 ORTHO05D004357 2.9e-79 299.7 295 58.6
Lj1g0011738 Lotus japonicus HOM05D005826 ORTHO05D004357 3.8e-79 299.3 297 68.4
vmacro01667 Vaccinium macrocarpon HOM05D005826 ORTHO05D004357 3.8e-79 299.3 351 63.0
AUR62006820 Chenopodium quinoa HOM05D005826 ORTHO05D004357 4.2e-78 295.8 342 52.0
Lj5C318G10 Lonicera japonica HOM05D002908 ORTHO05D007390 4.2e-78 295.8 341 58.4
arahy.Tifrunner.gnm1.ann1.TKMT5T Arachis hypogaea HOM05D005826 ORTHO05D004357 5.5e-78 295.4 341 62.5
Cpa.g.sc48.51 Carica papaya HOM05D005826 ORTHO05D004357 7.2e-78 295.0 342 62.3
MD12G1199800 Malus domestica HOM05D005826 ORTHO05D004357 9.4e-78 294.7 337 59.3
Eucgr.B01823 Eucalyptus grandis HOM05D005826 ORTHO05D004357 1.2e-77 294.3 297 62.6
arahy.Tifrunner.gnm1.ann1.CWLZ7L Arachis hypogaea HOM05D005826 ORTHO05D004357 1.6e-77 293.9 341 60.1
TAR636G1621 Trochodendron aralioides HOM05D005826 ORTHO05D004357 1.6e-77 293.9 341 54.0
PGR083G1613 Punica granatum HOM05D005826 ORTHO05D004357 2.1e-77 293.5 343 53.9
Glyma.19G225400 Glycine max HOM05D005826 ORTHO05D004357 2.7e-77 293.1 341 61.9
Nn3g21953 Nelumbo nucifera HOM05D005826 ORTHO05D004357 2.7e-77 293.1 341 58.9
Migut.N00974 Erythranthe guttata HOM05D005826 ORTHO05D004357 3.6e-77 292.7 298 57.4
Hund21832 Selenicereus undatus HOM05D005826 ORTHO05D004357 3.6e-77 292.7 308 58.1
FAN09G2233 Fragaria x ananassa HOM05D005826 ORTHO05D004357 4.7e-77 292.4 347 60.8
Lalb_Chr18g0046231 Lupinus albus HOM05D005826 ORTHO05D004357 4.7e-77 292.4 341 57.5
Sc09g0002410 Simmondsia chinensis HOM05D005826 ORTHO05D004357 6.1e-77 292.0 342 64.0
TPR.G1630 Trifolium pratense HOM05D005826 ORTHO05D004357 8.8e-76 288.1 344 54.9
Glyma.03G228100 Glycine max HOM05D005826 ORTHO05D004357 1.2e-75 287.7 341 57.5
Hma1.2p1_0052F.1_g030390 Hydrangea macrophylla HOM05D005826 ORTHO05D004357 1.2e-75 287.7 175 80.0
CsaV3_1G038040 Cucumis sativus L. HOM05D005826 ORTHO05D004357 1.5e-75 287.3 299 66.9
EL10Ac4g09561 Beta vulgaris HOM05D005826 ORTHO05D004357 2.6e-75 286.6 294 63.3
HPP92_027884 Vanilla planifolia HOM05D005826 ORTHO05D004357 2.6e-75 286.6 304 53.9
Haze_03986 Corylus avellana HOM05D005826 ORTHO05D004357 4.4e-75 285.8 249 72.7
HPP92_006322 Vanilla planifolia HOM05D005826 ORTHO05D004357 4.4e-75 285.8 304 53.6
SGA_v2.0_scaffold22G09707 Striga asiatica HOM05D005826 ORTHO05D004357 7.5e-75 285.0 293 55.3
Nn4g25335 Nelumbo nucifera HOM05D005826 ORTHO05D004357 2.8e-74 283.1 341 60.7
FvH4_6g08510 Fragaria vesca HOM05D005826 ORTHO05D004357 3.7e-74 282.7 347 61.1
FAN14G1262 Fragaria x ananassa HOM05D005826 ORTHO05D004357 8.3e-74 281.6 347 60.8
Sed0027683 Sechium edule HOM05D005826 ORTHO05D004357 8.3e-74 281.6 343 57.1
Psat3g015120 Pisum sativum HOM05D005826 ORTHO05D004357 1.4e-73 280.8 342 53.5
CAN.G1248.16 Capsicum annuum HOM05D005826 ORTHO05D004357 3.1e-73 279.6 326 61.0
unitig_26.g9561 Utricularia gibba HOM05D005826 ORTHO05D005018 2.7e-72 276.6 220 65.9
Aqoxy2G02470 Aquilegia oxysepala HOM05D005826 ORTHO05D004357 5.9e-72 275.4 345 60.9
DCAR_006590 Daucus carota HOM05D005826 ORTHO05D004357 5.9e-72 275.4 166 81.9
Sabra05G0000100 Salix brachista HOM05D005826 ORTHO05D004357 5.9e-72 275.4 343 64.7
Sabra05G0014200 Salix brachista HOM05D005826 ORTHO05D004357 5.9e-72 275.4 343 64.7
Ca_09273_v3 Cicer arietinum L. HOM05D005826 ORTHO05D004357 1.3e-71 274.2 298 59.1
THA.LOC104821749 Tarenaya hassleriana HOM05D005826 ORTHO05D004357 3.8e-71 272.7 341 58.1
Dinv24515 Davidia involucrata HOM05D005826 ORTHO05D004357 1.6e-69 267.3 345 60.0
Medtr7g111520 Medicago truncatula HOM05D005826 ORTHO05D004357 2.7e-69 266.5 290 65.9
Lsat_1_v5_gn_7_64900 Lactuca sativa HOM05D005826 ORTHO05D004357 5.2e-68 262.3 315 61.9
ATR0796G273 Amborella trichopoda HOM05D005826 ORTHO05D004357 2.2e-66 256.9 299 61.2
ClCG03G017880 Citrullus lanatus HOM05D005826 ORTHO05D004357 1.4e-65 254.2 200 67.0
Mapoly0026s0010 Marchantia polymorpha HOM05D005826 ORTHO05D004357 1.4e-65 254.2 170 71.2
Thhalv10004695m.g Eutrema salsugineum HOM05D005826 ORTHO05D004357 9.1e-65 251.5 297 59.3
Ah.06g190730 Amaranthus hybridus HOM05D005826 ORTHO05D004357 1.2e-64 251.1 294 58.2
SEGI_10560 Sequoiadendron giganteum HOM05D005826 ORTHO05D004357 5.9e-64 248.8 215 59.1
Carub.0006s2438 Capsella rubella HOM05D005826 ORTHO05D004357 7.7e-64 248.4 297 58.2
AT5G26610 Arabidopsis thaliana HOM05D005826 ORTHO05D004357 1.0e-63 248.1 297 56.9
AL6G38590 Arabidopsis lyrata HOM05D005826 ORTHO05D004357 1.1e-62 244.6 325 54.2
FAN02G3127 Fragaria x ananassa HOM05D005826 ORTHO05D004357 7.2e-62 241.9 346 57.5
Pp3c20_6860 Physcomitrium patens HOM05D005826 ORTHO05D004357 2.1e-61 240.4 297 53.9
CSS0045001 Camellia sinensis var. sinensis HOM05D005826 ORTHO05D004357 4.7e-61 239.2 343 59.8
CSS0017545 Camellia sinensis var. sinensis HOM05D005826 ORTHO05D004357 1.0e-60 238.0 341 60.1
Zm00001eb089260 Zea mays HOM05D005826 ORTHO05D004357 1.0e-60 238.0 164 71.3
MSTRG.27910 Avicennia marina HOM05D005826 ORTHO05D004357 3.0e-60 236.5 341 50.7
Cc02_g35870 Coffea canephora HOM05D005826 ORTHO05D004357 8.9e-60 235.0 341 56.9
RcHm_v2.0_Chr3g0458551 Rosa chinensis HOM05D005826 ORTHO05D004357 1.2e-59 234.6 344 54.4
Rhsim11G0104700 Rhododendron simsii HOM05D005826 ORTHO05D004357 2.0e-59 233.8 300 61.0
MBI12_g27791_MAGBIO Magnolia biondii HOM05D005826 ORTHO05D004357 5.4e-57 225.7 206 56.8
Gorai.013G210000 Gossypium raimondii HOM05D005826 ORTHO05D004357 7.0e-57 225.3 349 55.3
QL03p011008 Quercus lobata HOM05D005826 ORTHO05D004357 9.2e-57 224.9 302 58.9
Gohir.D13G184300 Gossypium hirsutum HOM05D005826 ORTHO05D004357 1.2e-56 224.6 351 55.0
HanXRQChr09g0247941 Helianthus annuus HOM05D005826 ORTHO05D004357 1.6e-56 224.2 299 63.9
Gohir.A13G177700 Gossypium hirsutum HOM05D005826 ORTHO05D004357 1.3e-55 221.1 212 62.7
Peaxi162Scf00194g00018 Petunia axillaris HOM05D005826 ORTHO05D004357 5.0e-55 219.2 341 51.9
Prupe.6G304400 Prunus persica HOM05D005826 ORTHO05D004357 1.1e-54 218.0 339 52.8
ECA240G4745 Erigeron canadensis HOM05D005826 ORTHO05D004357 9.5e-54 214.9 311 59.2
Aa31LG11G9920 Aethionema arabicum HOM05D005826 ORTHO05D004357 1.6e-53 214.2 336 54.5
Sp2g21260 Schrenkiella parvula HOM05D005826 ORTHO05D004357 4.7e-53 212.6 341 54.3
SMO196G0190 Selaginella moellendorffii HOM05D005826 ORTHO05D004357 4.7e-53 212.6 182 59.9
Nitab4.5_0002516g0020 Nicotiana tabacum HOM05D005826 ORTHO05D004357 3.1e-52 209.9 369 42.8
FAN05G0435 Fragaria x ananassa HOM05D005826 ORTHO05D004357 4.0e-52 209.5 347 51.9
Nitab4.5_0005662g0030 Nicotiana tabacum HOM05D005826 ORTHO05D004357 6.8e-52 208.8 212 59.9
CARHR186850 Cardamine hirsuta HOM05D005826 ORTHO05D004357 9.8e-51 204.9 167 68.9
A09p05710 Brassica napus HOM05D005826 ORTHO05D004357 6.4e-50 202.2 335 40.9
BraA09t36211Z Brassica rapa HOM05D005826 ORTHO05D004357 6.4e-50 202.2 335 40.9
PSO761G0619 Papaver somniferum HOM05D005826 ORTHO05D004357 2.4e-49 200.3 346 54.3
PSO210G7107 Papaver somniferum HOM05D005826 ORTHO05D004357 5.4e-49 199.1 346 50.9
CDE01G0499 Ceratophyllum demersum HOM05D005826 ORTHO05D004357 1.6e-48 197.6 170 67.6
BcaC04g23633 Brassica carinata HOM05D005826 ORTHO05D004357 2.7e-48 196.8 335 43.3
C09p06300 Brassica napus HOM05D005826 ORTHO05D004357 2.7e-48 196.8 335 43.3
BolC9t53550H Brassica oleracea HOM05D005826 ORTHO05D004357 2.7e-48 196.8 335 43.3
BcaB04g19716 Brassica carinata HOM05D005826 ORTHO05D004357 2.3e-47 193.7 297 50.8
MBI09_g02136_MAGBIO Magnolia biondii HOM05D005826 ORTHO05D004357 2.8e-45 186.8 206 52.4
CBR_g48434 Chara braunii HOM05D005826 ORTHO05D004357 5.4e-41 172.6 122 65.6
AagrBONN_evm.TU.Sc2ySwM_362.2503 Anthoceros agrestis HOM05D005826 ORTHO05D004357 1.7e-39 167.5 137 61.3
MBI06_g28828_MAGBIO Magnolia biondii HOM05D005826 ORTHO05D004357 1.1e-38 164.9 175 58.3
BcaNung03909 Brassica carinata HOM05D005826 ORTHO05D004357 2.3e-36 157.1 145 57.2
Os04g0115400 Oryza sativa ssp. japonica HOM05D005826 ORTHO05D004357 3.1e-36 156.8 112 66.1
Potri.013G002100 Populus trichocarpa HOM05D005826 ORTHO05D004357 4.9e-34 149.4 188 75.5
MBI12_g47801_MAGBIO Magnolia biondii HOM05D005826 ORTHO05D004357 7.1e-33 145.6 161 51.6
MELO3C015241.2 Cucumis melo HOM05D005826 ORTHO05D004357 4.6e-32 142.9 78 85.9
Cre03.g201250 Chlamydomonas reinhardtii HOM05D005826 ORTHO05D004357 1.3e-23 114.8 136 47.8
MELO3C021663.2 Cucumis melo HOM05D005826 ORTHO05D004357 6.9e-20 102.4 66 75.8
PGR083G0870 Punica granatum HOM05D005826 ORTHO05D004357 1.2e-19 101.7 64 78.1
BcaNung03680 Brassica carinata HOM05D005826 ORTHO05D004357 1.9e-17 94.4 77 61.0
C07p41530 Brassica napus HOM05D005826 ORTHO05D004357 3.5e-16 90.1 74 60.8
BolC7t44686H Brassica oleracea HOM05D005826 ORTHO05D004357 3.5e-16 90.1 74 60.8
BraA06t26622Z Brassica rapa HOM05D005826 ORTHO05D004357 3.9e-15 86.7 57 70.2
Os05g0229475 Oryza sativa ssp. japonica HOM05D005826 ORTHO05D004357 1.5e-14 84.7 47 78.7
A06p36960 Brassica napus HOM05D005826 ORTHO05D004357 1.9e-14 84.3 57 68.4
PGSC0003DMG400018243 Solanum tuberosum HOM05D005826 ORTHO05D004357 7.6e-11 72.4 151 46.4
CDE12G0861 Ceratophyllum demersum HOM05D005826 ORTHO05D004357 1.8e-07 61.2 29 93.1
Os04g0114801 Oryza sativa ssp. japonica HOM05D005826 ORTHO05D004357 2.3e-07 60.8 59 52.5
DCAR_023493 Daucus carota HOM05D006753 ORTHO05D008521 6.7e-07 59.3 107 34.6
ECA247G0541 Erigeron canadensis HOM05D002899 ORTHO05D003850 1.1e-06 58.5 48 52.1
Glyma.10G288900 Glycine max HOM05D006753 ORTHO05D008521 1.5e-06 58.2 108 31.5
CBR_g4860 Chara braunii HOM05D006823 ORTHO05D008608 1.9e-06 57.8 70 34.3
RcHm_v2.0_Chr5g0030611 Rosa chinensis HOM05D006753 ORTHO05D008521 1.9e-06 57.8 101 33.7
Zm00001eb044950 Zea mays HOM05D006753 ORTHO05D008521 2.5e-06 57.4 98 33.7
Lsat_1_v5_gn_2_64221 Lactuca sativa HOM05D006753 ORTHO05D008521 4.3e-06 56.6 60 45.0
Lj4g0003244 Lotus japonicus HOM05D005384 ORTHO05D006477 4.3e-06 56.6 68 39.7
PSO063G2822 Papaver somniferum HOM05D006753 ORTHO05D008521 4.3e-06 56.6 50 50.0
PSO782G2482 Papaver somniferum HOM05D006753 ORTHO05D008521 4.3e-06 56.6 50 50.0
Sed0019092 Sechium edule HOM05D006753 ORTHO05D008521 4.3e-06 56.6 115 33.9
CDE12G0199 Ceratophyllum demersum HOM05D005384 ORTHO05D006477 5.6e-06 56.2 68 36.8
Lalb_Chr05g0228951 Lupinus albus HOM05D005384 ORTHO05D006477 5.6e-06 56.2 68 39.7
Lalb_Chr16g0391981 Lupinus albus HOM05D005384 ORTHO05D006477 5.6e-06 56.2 128 28.1
TPR.G28963 Trifolium pratense HOM05D005384 ORTHO05D006477 5.6e-06 56.2 132 30.3
ATR0124G001 Amborella trichopoda HOM05D006753 ORTHO05D008521 7.4e-06 55.8 112 30.4
Aqoxy2G00924 Aquilegia oxysepala HOM05D002899 ORTHO05D003850 7.4e-06 55.8 66 42.4
Hund07648 Selenicereus undatus HOM05D004785 ORTHO05D005704 7.4e-06 55.8 68 42.6
VMungo1080G1418 Vigna mungo HOM05D004785 ORTHO05D005704 7.4e-06 55.8 88 40.9
arahy.Tifrunner.gnm1.ann1.RGG8YR Arachis hypogaea HOM05D006753 ORTHO05D008521 9.6e-06 55.5 56 44.6
A09p59170 Brassica napus HOM05D006753 ORTHO05D008521 9.6e-06 55.5 53 45.3
CsaV3_5G029140 Cucumis sativus L. HOM05D006753 ORTHO05D008521 9.6e-06 55.5 123 34.1
Dinv09378 Davidia involucrata HOM05D004785 ORTHO05D005704 9.6e-06 55.5 96 36.5
FAN11G3971 Fragaria x ananassa HOM05D006753 ORTHO05D008521 9.6e-06 55.5 105 33.3
Glyma.08G152600 Glycine max HOM05D004785 ORTHO05D005704 9.6e-06 55.5 67 46.3
Glyma.15G272000 Glycine max HOM05D004785 ORTHO05D005704 9.6e-06 55.5 88 39.8
Lj7C568G16 Lonicera japonica HOM05D004785 ORTHO05D005704 9.6e-06 55.5 68 45.6
Nn3g18540 Nelumbo nucifera HOM05D006753 ORTHO05D008521 9.6e-06 55.5 115 32.2
Phvul.007G012200 Phaseolus vulgaris HOM05D006753 ORTHO05D008521 9.6e-06 55.5 56 44.6
Potri.004G081800 Populus trichocarpa HOM05D005384 ORTHO05D006477 9.6e-06 55.5 62 43.5
SMO145G0064 Selaginella moellendorffii HOM05D006823 ORTHO05D008608 9.6e-06 55.5 69 42.0
SGA_v2.0_scaffold119G32769 Striga asiatica HOM05D006753 ORTHO05D008521 9.6e-06 55.5 51 49.0


User provided reference genes

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