Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Sabra12G0094900 Salix brachista HOM05D005186 ORTHO05D006278 1.6e-207 726.1 423 100.0
Potri.012G126000 Populus trichocarpa HOM05D005186 ORTHO05D006278 7.6e-170 600.9 429 83.7
Potri.015G126800 Populus trichocarpa HOM05D005186 ORTHO05D006278 6.4e-161 571.2 426 82.6
Sabra15G0140200 Salix brachista HOM05D005186 ORTHO05D006278 2.4e-155 552.7 425 76.9
TWI39G1272 Tripterygium wilfordii HOM05D005186 ORTHO05D006278 9.1e-115 417.9 439 60.1
TWI23G1038 Tripterygium wilfordii HOM05D005186 ORTHO05D006278 2.2e-113 413.3 433 60.5
Thecc.03G156500 Theobroma cacao HOM05D005186 ORTHO05D006278 1.2e-109 401.0 421 63.7
Manes.06G135200 Manihot esculenta HOM05D005186 ORTHO05D006278 6.3e-108 395.2 434 64.1
Manes.14G035500 Manihot esculenta HOM05D005186 ORTHO05D006278 3.5e-106 389.4 417 62.1
Atru.chr1.716 Acer truncatum HOM05D005186 ORTHO05D006278 4.5e-106 389.0 426 57.0
Prupe.2G277700 Prunus persica HOM05D005186 ORTHO05D006278 4.5e-106 389.0 435 63.7
Ciclev10005111m.g Citrus clementina HOM05D005186 ORTHO05D006278 1.3e-105 387.5 437 60.4
Duzib205G1009 Durio zibethinus HOM05D005186 ORTHO05D006278 1.7e-105 387.1 427 62.8
Cpa.g.sc3.315 Carica papaya HOM05D005186 ORTHO05D006278 4.2e-104 382.5 424 62.0
CANSAT56G0052 Cannabis sativa HOM05D005186 ORTHO05D006278 1.0e-102 377.9 435 55.2
Dinv28566 Davidia involucrata HOM05D005186 ORTHO05D006278 1.8e-102 377.1 446 59.0
Gohir.D03G107500 Gossypium hirsutum HOM05D005186 ORTHO05D006278 5.7e-101 372.1 421 61.0
Gohir.A03G058600 Gossypium hirsutum HOM05D005186 ORTHO05D006278 2.2e-100 370.2 423 61.0
Haze_13870 Corylus avellana HOM05D005186 ORTHO05D006278 4.8e-100 369.0 434 59.4
Gorai.003G113800 Gossypium raimondii HOM05D005186 ORTHO05D006278 1.1e-99 367.9 421 60.6
vmacro06793 Vaccinium macrocarpon HOM05D005186 ORTHO05D006278 2.9e-97 359.8 445 53.9
TAR374G0329 Trochodendron aralioides HOM05D005186 ORTHO05D006278 9.5e-96 354.8 446 55.4
COL.COLO4_14129 Corchorus olitorius HOM05D005186 ORTHO05D006278 1.6e-95 354.0 422 56.9
Actinidia13575 Actinidia chinensis HOM05D005186 ORTHO05D006278 1.0e-94 351.3 474 56.3
RcHm_v2.0_Chr1g0374461 Rosa chinensis HOM05D005186 ORTHO05D006278 6.8e-94 348.6 440 59.1
FAN06G2498 Fragaria x ananassa HOM05D005186 ORTHO05D006278 2.0e-93 347.1 432 58.1
Hma1.2p1_0432F.1_g151690 Hydrangea macrophylla HOM05D005186 ORTHO05D006278 2.0e-93 347.1 437 59.7
FAN01G3063 Fragaria x ananassa HOM05D005186 ORTHO05D006278 5.7e-93 345.5 432 57.2
FAN10G1701 Fragaria x ananassa HOM05D005186 ORTHO05D006278 5.7e-93 345.5 432 56.7
FvH4_7g27600 Fragaria vesca HOM05D005186 ORTHO05D006278 2.2e-92 343.6 432 57.2
RhsimUnG0046700 Rhododendron simsii HOM05D005186 ORTHO05D006278 2.2e-92 343.6 447 57.7
FAN03G1399 Fragaria x ananassa HOM05D005186 ORTHO05D006278 1.4e-91 340.9 433 57.0
FAN06G5126 Fragaria x ananassa HOM05D005186 ORTHO05D006278 3.1e-91 339.7 430 57.0
QL09p019611 Quercus lobata HOM05D005186 ORTHO05D006278 1.2e-90 337.8 449 55.9
Oeu022491.2 Olea europaea HOM05D005186 ORTHO05D006278 7.8e-90 335.1 465 55.7
Nn6g34030 Nelumbo nucifera HOM05D005186 ORTHO05D006278 6.6e-89 332.0 448 53.6
Nn1g01074 Nelumbo nucifera HOM05D005186 ORTHO05D006278 3.3e-88 329.7 445 53.3
Aqoxy7G00728 Aquilegia oxysepala HOM05D005186 ORTHO05D006278 5.6e-88 328.9 437 50.1
Lj3g0017931 Lotus japonicus HOM05D005186 ORTHO05D006278 1.2e-87 327.8 437 52.6
Hma1.2p1_1640F.1_g295100 Hydrangea macrophylla HOM05D005186 ORTHO05D006278 2.3e-86 323.6 431 57.5
Nitab4.5_0001383g0010 Nicotiana tabacum HOM05D005186 ORTHO05D006278 3.1e-86 323.2 444 53.4
Eucgr.A02891 Eucalyptus grandis HOM05D005186 ORTHO05D006278 4.0e-86 322.8 458 52.2
arahy.Tifrunner.gnm1.ann1.7NC073 Arachis hypogaea HOM05D005186 ORTHO05D006278 6.8e-86 322.0 449 52.6
PGR042G0730 Punica granatum HOM05D005186 ORTHO05D006278 1.5e-85 320.9 430 51.9
Migut.F00469 Erythranthe guttata HOM05D005186 ORTHO05D006278 2.6e-85 320.1 434 52.5
CsaV3_7G006320 Cucumis sativus L. HOM05D005186 ORTHO05D006278 3.4e-85 319.7 437 49.9
Oeu042561.2 Olea europaea HOM05D005186 ORTHO05D006278 7.5e-85 318.5 456 52.9
PGR142G0385 Punica granatum HOM05D005186 ORTHO05D006278 7.5e-85 318.5 445 53.5
SGA_v2.0_scaffold543G52822 Striga asiatica HOM05D005186 ORTHO05D006278 2.9e-84 316.6 440 49.3
MELO3C018660.2 Cucumis melo HOM05D005186 ORTHO05D006278 3.7e-84 316.2 438 51.8
arahy.Tifrunner.gnm1.ann1.UNN1LQ Arachis hypogaea HOM05D005186 ORTHO05D006278 1.1e-83 314.7 461 51.2
Dinv22950 Davidia involucrata HOM05D005186 ORTHO05D006278 1.1e-83 314.7 399 57.4
ClCG09G015150 Citrullus lanatus HOM05D005186 ORTHO05D006278 3.2e-83 313.2 439 50.3
VMungo1127G0816 Vigna mungo HOM05D005186 ORTHO05D006278 3.2e-83 313.2 456 52.4
Hund11823 Selenicereus undatus HOM05D005186 ORTHO05D006278 5.4e-83 312.4 455 55.2
Sopen03g023730 Solanum pennellii HOM05D005186 ORTHO05D006278 1.6e-82 310.8 436 54.4
CAN.G48.15 Capsicum annuum HOM05D005186 ORTHO05D006278 2.0e-82 310.5 447 51.5
Phvul.011G006100 Phaseolus vulgaris HOM05D005186 ORTHO05D006278 2.7e-82 310.1 455 51.0
PGSC0003DMG400013858 Solanum tuberosum HOM05D005186 ORTHO05D006278 3.5e-82 309.7 442 53.2
SGA_v2.0_scaffold2G01194 Striga asiatica HOM05D005186 ORTHO05D006278 3.5e-82 309.7 443 54.0
Solyc03g083970.3 Solanum lycopersicum HOM05D005186 ORTHO05D006278 6.0e-82 308.9 436 53.7
Lj8A42G21 Lonicera japonica HOM05D005186 ORTHO05D006278 7.8e-82 308.5 438 53.2
Sc13g0007880 Simmondsia chinensis HOM05D005186 ORTHO05D006278 1.9e-80 303.9 378 57.1
Cc02_g04200 Coffea canephora HOM05D005186 ORTHO05D006278 3.3e-80 303.1 448 53.1
Nitab4.5_0003875g0030 Nicotiana tabacum HOM05D005186 ORTHO05D006278 1.2e-79 301.2 440 53.0
TPR.G3671 Trifolium pratense HOM05D005186 ORTHO05D006278 1.6e-79 300.8 440 52.0
CiPaw.04G060200 Carya illinoinensis HOM05D005186 ORTHO05D006278 2.8e-79 300.1 438 54.8
Lalb_Chr19g0140361 Lupinus albus HOM05D005186 ORTHO05D006278 3.6e-79 299.7 398 54.5
MSTRG.128 Avicennia marina HOM05D005186 ORTHO05D006278 1.4e-78 297.7 445 50.1
Sed0012571 Sechium edule HOM05D005186 ORTHO05D006278 2.3e-78 297.0 421 52.5
Glyma.09G231200 Glycine max HOM05D005186 ORTHO05D006278 5.2e-78 295.8 453 48.3
HanXRQChr14g0461411 Helianthus annuus HOM05D005186 ORTHO05D006278 2.6e-77 293.5 395 54.9
SalBow2G2587 Salvia bowleyana HOM05D005186 ORTHO05D006278 4.4e-77 292.7 419 49.6
Lalb_Chr01g0000291 Lupinus albus HOM05D005186 ORTHO05D006278 1.3e-76 291.2 338 55.6
Glyma.12G005300 Glycine max HOM05D005186 ORTHO05D006278 1.9e-75 287.3 447 51.2
Sed0005126 Sechium edule HOM05D005186 ORTHO05D006278 3.2e-75 286.6 431 45.7
TAR375G0993 Trochodendron aralioides HOM05D005186 ORTHO05D006278 4.1e-75 286.2 368 57.1
PSO170G0780 Papaver somniferum HOM05D005186 ORTHO05D006278 1.6e-74 284.3 451 48.1
EL10Ac3g05838 Beta vulgaris HOM05D005186 ORTHO05D006278 2.1e-74 283.9 432 53.7
Ah.07g207900 Amaranthus hybridus HOM05D005186 ORTHO05D006278 3.5e-74 283.1 413 52.5
Medtr4g036110 Medicago truncatula HOM05D005186 ORTHO05D006278 1.0e-73 281.6 427 52.0
ECA238G0955 Erigeron canadensis HOM05D005186 ORTHO05D006278 3.9e-73 279.6 442 50.0
PSO017G1100 Papaver somniferum HOM05D005186 ORTHO05D006278 6.6e-73 278.9 450 48.0
CiPaw.03G094100 Carya illinoinensis HOM05D005186 ORTHO05D006278 8.6e-73 278.5 338 60.4
MBI04_g37589_MAGBIO Magnolia biondii HOM05D005186 ORTHO05D006278 5.6e-72 275.8 446 47.3
C03p64500 Brassica napus HOM05D005186 ORTHO05D006278 4.7e-71 272.7 459 47.1
DCAR_020192 Daucus carota HOM05D005186 ORTHO05D006278 4.7e-71 272.7 398 50.8
Peaxi162Scf00241g00318 Petunia axillaris HOM05D005186 ORTHO05D006278 6.2e-71 272.3 441 51.5
Lsat_1_v5_gn_2_129120 Lactuca sativa HOM05D005186 ORTHO05D006278 8.1e-71 271.9 443 49.4
BcaC01g02463 Brassica carinata HOM05D005186 ORTHO05D006278 1.4e-70 271.2 459 46.8
unitig_1.g29355 Utricularia gibba HOM05D005186 ORTHO05D006278 1.4e-70 271.2 426 48.6
unitig_747.g22057 Utricularia gibba HOM05D005186 ORTHO05D006278 1.4e-70 271.2 426 48.6
Psat7g207000 Pisum sativum HOM05D005186 ORTHO05D006278 1.8e-70 270.8 251 65.7
GSVIVG01018630001 Vitis vinifera HOM05D005186 ORTHO05D006278 1.2e-69 268.1 281 59.1
AUR62002195 Chenopodium quinoa HOM05D005186 ORTHO05D006278 2.0e-69 267.3 218 71.1
AUR62015515 Chenopodium quinoa HOM05D005186 ORTHO05D006278 2.6e-69 266.9 218 70.6
Thhalv10004201m.g Eutrema salsugineum HOM05D005186 ORTHO05D006278 4.4e-69 266.2 474 44.7
AL8G39220 Arabidopsis lyrata HOM05D005186 ORTHO05D006278 1.3e-68 264.6 477 48.0
AT5G62390 Arabidopsis thaliana HOM05D005186 ORTHO05D006278 1.9e-67 260.8 476 47.1
BolC3t18705H Brassica oleracea HOM05D005186 ORTHO05D006278 2.4e-67 260.4 454 45.8
Sp2g25560 Schrenkiella parvula HOM05D005186 ORTHO05D006278 2.7e-66 256.9 489 45.0
Carub.0008s2307 Capsella rubella HOM05D005186 ORTHO05D006278 1.0e-65 255.0 495 45.9
Ca_25005_v3 Cicer arietinum L. HOM05D005186 ORTHO05D006278 6.6e-65 252.3 191 71.2
Aa31LG11G1230 Aethionema arabicum HOM05D005186 ORTHO05D006278 1.5e-64 251.1 465 46.0
THA.LOC104821410 Tarenaya hassleriana HOM05D005186 ORTHO05D006278 1.5e-64 251.1 483 46.4
C01p15530 Brassica napus HOM05D005186 ORTHO05D006278 2.1e-63 247.3 482 42.5
BolC1t01505H Brassica oleracea HOM05D005186 ORTHO05D006278 2.8e-63 246.9 479 41.8
CDE02G0091 Ceratophyllum demersum HOM05D005186 ORTHO05D006278 4.4e-61 239.6 430 43.0
CARHR276170 Cardamine hirsuta HOM05D005186 ORTHO05D006278 7.6e-61 238.8 474 46.4
CSS0020740 Camellia sinensis var. sinensis HOM05D005186 ORTHO05D006278 9.9e-61 238.4 340 55.3
BraA01t01233Z Brassica rapa HOM05D005186 ORTHO05D006278 1.4e-59 234.6 500 40.2
Migut.F01178 Erythranthe guttata HOM05D005186 ORTHO05D006278 1.4e-59 234.6 199 67.8
BcaNung02779 Brassica carinata HOM05D005186 ORTHO05D006278 7.1e-59 232.3 191 66.0
HPP92_022436 Vanilla planifolia HOM05D005186 ORTHO05D006278 1.7e-57 227.6 339 46.6
A01p12890 Brassica napus HOM05D005186 ORTHO05D006278 3.0e-57 226.9 190 65.3
Hund04601 Selenicereus undatus HOM05D005186 ORTHO05D006278 3.5e-50 203.4 428 42.5
Thecc.01G380900 Theobroma cacao HOM05D005186 ORTHO05D006278 1.0e-49 201.8 382 43.7
COL.COLO4_12507 Corchorus olitorius HOM05D005186 ORTHO05D006278 3.9e-49 199.9 361 42.4
CDE11G1075 Ceratophyllum demersum HOM05D005186 ORTHO05D006278 5.6e-48 196.1 429 41.7
BcaC01g02462 Brassica carinata HOM05D005186 ORTHO05D006278 1.1e-46 191.8 165 65.5
Zm00001eb379410 Zea mays HOM05D005186 ORTHO05D006278 3.4e-45 186.8 206 53.9
ATR1153G063 Amborella trichopoda HOM05D005186 ORTHO05D006278 4.5e-45 186.4 407 42.8
SHI13968 Sapria himalayana HOM05D005186 ORTHO05D006278 2.9e-44 183.7 444 35.4
Os06g0104400 Oryza sativa ssp. japonica HOM05D005186 ORTHO05D006278 1.2e-42 178.3 206 52.4
HanXRQChr05g0146091 Helianthus annuus HOM05D005186 ORTHO05D006278 1.1e-40 171.8 180 57.8
Zm00001eb229450 Zea mays HOM05D005186 ORTHO05D006278 1.1e-40 171.8 195 52.3
Os02g0105500 Oryza sativa ssp. japonica HOM05D005186 ORTHO05D006278 1.1e-35 155.2 182 50.0
Atru.chr5.265 Acer truncatum HOM05D005186 ORTHO05D006278 7.4e-32 142.5 148 55.4
COL.COLO4_07114 Corchorus olitorius HOM05D005186 ORTHO05D006278 5.7e-24 116.3 80 75.0
CAN.G319.13 Capsicum annuum HOM05D005186 ORTHO05D006278 5.3e-22 109.8 77 77.9
CAN.G1067.7 Capsicum annuum HOM05D005186 ORTHO05D006278 1.7e-20 104.8 202 39.1
CSS0003747 Camellia sinensis var. sinensis HOM05D005186 ORTHO05D006278 2.9e-20 104.0 68 79.4
SEGI_24397 Sequoiadendron giganteum HOM05D005186 ORTHO05D006278 2.1e-18 97.8 190 34.7
GSVIVG01000691001 Vitis vinifera HOM05D005186 ORTHO05D006278 2.1e-18 97.8 90 61.1
GSVIVG01000692001 Vitis vinifera HOM05D005186 ORTHO05D006278 6.1e-18 96.3 90 61.1
ECA238G1972 Erigeron canadensis HOM05D005186 ORTHO05D006278 7.9e-18 95.9 63 74.6
FAN03G1572 Fragaria x ananassa HOM05D005186 ORTHO05D006278 2.0e-13 81.3 47 85.1
Nn3g18746 Nelumbo nucifera HOM05D005186 ORTHO05D006278 6.5e-12 76.3 86 45.3
A06p29100 Brassica napus HOM05D005186 ORTHO05D006278 5.5e-11 73.2 133 38.3
RcHm_v2.0_Chr1g0335331 Rosa chinensis HOM05D005186 ORTHO05D006278 9.4e-11 72.4 62 66.1
Sabra14G0043300 Salix brachista HOM05D005186 ORTHO05D006278 1.6e-10 71.6 70 57.1
Atru.chr1.1456 Acer truncatum HOM05D005186 ORTHO05D006278 4.7e-10 70.1 74 52.7
Ca_25004_v3 Cicer arietinum L. HOM05D005186 ORTHO05D006278 1.1e-06 58.9 265 31.7
Mapoly0035s0113 Marchantia polymorpha HOM05D006269 ORTHO05D001487 1.8e-06 58.2 138 30.4
Sc11g0004700 Simmondsia chinensis HOM05D005710 ORTHO05D004657 4.1e-06 57.0 157 30.6
BraA06t25857Z Brassica rapa HOM05D005186 ORTHO05D006278 7.0e-06 56.2 72 41.7
Peaxi162Scf01254g00022 Petunia axillaris HOM05D006269 ORTHO05D001487 7.0e-06 56.2 204 24.5


User provided reference genes

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