Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Sabra12G0094200 Salix brachista HOM05D005021 ORTHO05D006824 0.0e+00 2749.2 1389 100.0
Potri.012G124400 Populus trichocarpa HOM05D005021 ORTHO05D006824 0.0e+00 2699.5 1389 98.1
Potri.015G124500 Populus trichocarpa HOM05D005021 ORTHO05D006824 0.0e+00 2515.3 1390 91.7
COL.COLO4_17653 Corchorus olitorius HOM05D005021 ORTHO05D006824 0.0e+00 2483.4 1389 89.0
Thecc.02G008800 Theobroma cacao HOM05D005021 ORTHO05D006824 0.0e+00 2469.1 1389 89.0
Atru.chr10.559 Acer truncatum HOM05D005021 ORTHO05D006824 0.0e+00 2458.3 1389 88.2
Gohir.A01G141263 Gossypium hirsutum HOM05D005021 ORTHO05D006824 0.0e+00 2457.9 1391 88.0
Gorai.002G164100 Gossypium raimondii HOM05D005021 ORTHO05D006824 0.0e+00 2457.6 1391 88.1
Gohir.D01G132500 Gossypium hirsutum HOM05D005021 ORTHO05D006824 0.0e+00 2445.6 1391 87.9
Ciclev10014047m.g Citrus clementina HOM05D005021 ORTHO05D006824 0.0e+00 2437.5 1389 87.5
Prupe.4G113100 Prunus persica HOM05D005021 ORTHO05D006824 0.0e+00 2425.2 1390 87.0
RcHm_v2.0_Chr5g0020301 Rosa chinensis HOM05D005021 ORTHO05D006824 0.0e+00 2422.9 1389 86.9
TWI38G0923 Tripterygium wilfordii HOM05D005021 ORTHO05D006824 0.0e+00 2421.4 1390 86.8
Cpa.g.sc30.159 Carica papaya HOM05D005021 ORTHO05D006824 0.0e+00 2419.0 1401 86.5
Dinv25918 Davidia involucrata HOM05D005021 ORTHO05D006824 0.0e+00 2417.9 1390 87.2
TWI38G0776 Tripterygium wilfordii HOM05D005021 ORTHO05D006824 0.0e+00 2411.3 1390 86.6
FvH4_3g12410 Fragaria vesca HOM05D005021 ORTHO05D006824 0.0e+00 2406.3 1389 86.5
QL11p016313 Quercus lobata HOM05D005021 ORTHO05D006824 0.0e+00 2402.1 1389 86.2
GSVIVG01012103001 Vitis vinifera HOM05D005021 ORTHO05D006824 0.0e+00 2401.7 1395 86.3
Cfa000703 Carpinus fangiana HOM05D005021 ORTHO05D006824 0.0e+00 2400.5 1390 86.0
CSS0004737 Camellia sinensis var. sinensis HOM05D005021 ORTHO05D006824 0.0e+00 2394.4 1391 86.3
MD10G1231300 Malus domestica HOM05D005021 ORTHO05D006824 0.0e+00 2389.0 1390 86.2
Duzib248G0067 Durio zibethinus HOM05D005021 ORTHO05D006824 0.0e+00 2384.4 1347 88.1
CiPaw.10G064100 Carya illinoinensis HOM05D005021 ORTHO05D006824 0.0e+00 2382.8 1389 85.5
Eucgr.D00052 Eucalyptus grandis HOM05D005021 ORTHO05D006824 0.0e+00 2381.7 1389 85.3
CANSAT35G0082 Cannabis sativa HOM05D005021 ORTHO05D006824 0.0e+00 2376.3 1390 85.0
MD05G1250500 Malus domestica HOM05D005021 ORTHO05D006824 0.0e+00 2364.7 1390 85.3
FAN21G1452 Fragaria x ananassa HOM05D005021 ORTHO05D006824 0.0e+00 2363.2 1389 85.2
Glyma.20G019300 Glycine max HOM05D005021 ORTHO05D006824 0.0e+00 2356.3 1391 84.0
Phvul.002G097500 Phaseolus vulgaris HOM05D005021 ORTHO05D006824 0.0e+00 2346.6 1391 83.9
TAR626G1325 Trochodendron aralioides HOM05D005021 ORTHO05D006824 0.0e+00 2342.0 1389 84.3
Ca_18756_v3 Cicer arietinum L. HOM05D005021 ORTHO05D006824 0.0e+00 2333.9 1391 83.5
Psat7g129680 Pisum sativum HOM05D005021 ORTHO05D006824 0.0e+00 2333.5 1391 83.4
Haze_06074 Corylus avellana HOM05D005021 ORTHO05D006824 0.0e+00 2331.2 1434 82.4
ClCG01G009560 Citrullus lanatus HOM05D005021 ORTHO05D006824 0.0e+00 2330.4 1389 83.2
MELO3C021737.2 Cucumis melo HOM05D005021 ORTHO05D006824 0.0e+00 2327.0 1390 83.5
Lj4g0005220 Lotus japonicus HOM05D005021 ORTHO05D006824 0.0e+00 2326.2 1393 83.1
CsaV3_1G046230 Cucumis sativus L. HOM05D005021 ORTHO05D006824 0.0e+00 2324.7 1389 83.2
arahy.Tifrunner.gnm1.ann1.79RC6W Arachis hypogaea HOM05D005021 ORTHO05D006824 0.0e+00 2322.0 1481 78.9
TPR.G38288 Trifolium pratense HOM05D005021 ORTHO05D006824 0.0e+00 2318.5 1391 82.9
FAN25G1951 Fragaria x ananassa HOM05D005021 ORTHO05D006824 0.0e+00 2315.8 1405 83.3
Medtr4g084140 Medicago truncatula HOM05D005021 ORTHO05D006824 0.0e+00 2314.7 1393 82.6
Lalb_Chr16g0385181 Lupinus albus HOM05D005021 ORTHO05D006824 0.0e+00 2312.0 1392 82.8
Solyc02g068720.3 Solanum lycopersicum HOM05D005021 ORTHO05D006824 0.0e+00 2303.5 1390 81.8
Sed0001856 Sechium edule HOM05D005021 ORTHO05D006824 0.0e+00 2301.6 1389 82.9
Sopen02g017890 Solanum pennellii HOM05D005021 ORTHO05D006824 0.0e+00 2296.9 1390 81.7
Cc09_g06010 Coffea canephora HOM05D005021 ORTHO05D006824 0.0e+00 2291.5 1390 82.8
Migut.M01986 Erythranthe guttata HOM05D005021 ORTHO05D006824 0.0e+00 2288.1 1395 82.0
Nitab4.5_0001288g0150 Nicotiana tabacum HOM05D005021 ORTHO05D006824 0.0e+00 2286.1 1389 81.6
Nn7g38248 Nelumbo nucifera HOM05D005021 ORTHO05D006824 0.0e+00 2284.6 1426 81.6
PGR004G0612 Punica granatum HOM05D005021 ORTHO05D006824 0.0e+00 2284.6 1390 82.9
Manes.16G055900 Manihot esculenta HOM05D005021 ORTHO05D006824 0.0e+00 2274.6 1253 91.1
Carub.0004s1679 Capsella rubella HOM05D005021 ORTHO05D006824 0.0e+00 2267.3 1407 81.0
DCAR_003775 Daucus carota HOM05D005021 ORTHO05D006824 0.0e+00 2265.3 1390 81.7
ECA238G3003 Erigeron canadensis HOM05D005021 ORTHO05D006824 0.0e+00 2265.0 1390 82.4
Nitab4.5_0007745g0040 Nicotiana tabacum HOM05D005021 ORTHO05D006824 0.0e+00 2262.6 1401 80.5
CAN.G149.8 Capsicum annuum HOM05D005021 ORTHO05D006824 0.0e+00 2258.8 1403 80.0
HanXRQChr14g0447451 Helianthus annuus HOM05D005021 ORTHO05D006824 0.0e+00 2256.9 1390 81.8
THA.LOC104798554 Tarenaya hassleriana HOM05D005021 ORTHO05D006824 0.0e+00 2256.5 1399 80.8
Aa31LG9G16120 Aethionema arabicum HOM05D005021 ORTHO05D006824 0.0e+00 2256.1 1419 79.8
arahy.Tifrunner.gnm1.ann1.59QZXR Arachis hypogaea HOM05D005021 ORTHO05D006824 0.0e+00 2255.3 1484 77.0
AL4G31120 Arabidopsis lyrata HOM05D005021 ORTHO05D006824 0.0e+00 2253.8 1404 80.9
Oeu060353.1 Olea europaea HOM05D005021 ORTHO05D006824 0.0e+00 2246.5 1415 79.6
Thhalv10016146m.g Eutrema salsugineum HOM05D005021 ORTHO05D006824 0.0e+00 2244.5 1404 80.5
A05p10630 Brassica napus HOM05D005021 ORTHO05D006824 0.0e+00 2239.2 1403 80.4
BcaB02g09478 Brassica carinata HOM05D005021 ORTHO05D006824 0.0e+00 2236.8 1404 80.6
BraA05t20004Z Brassica rapa HOM05D005021 ORTHO05D006824 0.0e+00 2236.8 1404 80.3
BolC4t22962H Brassica oleracea HOM05D005021 ORTHO05D006824 0.0e+00 2233.4 1404 80.3
C04p13730 Brassica napus HOM05D005021 ORTHO05D006824 0.0e+00 2231.8 1404 80.0
SalBow8G3018 Salvia bowleyana HOM05D005021 ORTHO05D006824 0.0e+00 2230.3 1399 79.7
Aqoxy1G01424 Aquilegia oxysepala HOM05D005021 ORTHO05D006824 0.0e+00 2228.0 1390 80.1
BcaB02g09480 Brassica carinata HOM05D005021 ORTHO05D006824 0.0e+00 2215.7 1414 79.8
AT2G35110 Arabidopsis thaliana HOM05D005021 ORTHO05D006824 0.0e+00 2207.6 1369 80.6
PSO675G8902 Papaver somniferum HOM05D005021 ORTHO05D006824 0.0e+00 2185.2 1391 78.6
Lj1A1146G59 Lonicera japonica HOM05D005021 ORTHO05D006824 0.0e+00 2157.5 1418 78.7
Hma1.2p1_1005F.1_g246940 Hydrangea macrophylla HOM05D005021 ORTHO05D006824 0.0e+00 2113.6 1225 85.6
vmacro03526 Vaccinium macrocarpon HOM05D005021 ORTHO05D006824 0.0e+00 2113.6 1700 66.5
AUR62037395 Chenopodium quinoa HOM05D005021 ORTHO05D006824 0.0e+00 2067.0 1353 77.4
AUR62041742 Chenopodium quinoa HOM05D005021 ORTHO05D006824 0.0e+00 2062.0 1346 77.1
Hund09140 Selenicereus undatus HOM05D005021 ORTHO05D006824 0.0e+00 2053.5 1351 77.5
RhsimUnG0043400 Rhododendron simsii HOM05D005021 ORTHO05D006824 0.0e+00 2028.4 1305 79.2
EL10Ac9g20953 Beta vulgaris HOM05D005021 ORTHO05D006824 0.0e+00 2013.8 1401 74.2
SGA_v2.0_scaffold175G39355 Striga asiatica HOM05D005021 ORTHO05D006824 0.0e+00 1968.7 1378 74.0
unitig_748.g8077 Utricularia gibba HOM05D005021 ORTHO05D006824 0.0e+00 1962.6 1333 73.8
Sc17g0003700 Simmondsia chinensis HOM05D005021 ORTHO05D006824 0.0e+00 1951.8 1191 81.2
Os08g0544500 Oryza sativa ssp. japonica HOM05D005021 ORTHO05D006824 0.0e+00 1940.6 1373 70.9
ATR0752G031 Amborella trichopoda HOM05D005021 ORTHO05D006824 0.0e+00 1872.8 1393 68.0
Zm00001eb405230 Zea mays HOM05D005021 ORTHO05D006824 0.0e+00 1872.1 1369 69.4
Ah.01g015830 Amaranthus hybridus HOM05D005021 ORTHO05D006824 0.0e+00 1838.5 1530 64.5
Peaxi162Scf00149g00312 Petunia axillaris HOM05D005021 ORTHO05D006824 0.0e+00 1519.6 930 80.6
CDE05G3601 Ceratophyllum demersum HOM05D005021 ORTHO05D006824 0.0e+00 1478.8 1158 64.2
Sp4g17340 Schrenkiella parvula HOM05D005021 ORTHO05D006824 0.0e+00 1458.4 823 87.6
Mapoly0087s0075 Marchantia polymorpha HOM05D005021 ORTHO05D006824 0.0e+00 1439.9 1387 53.6
Lsat_1_v5_gn_2_63641 Lactuca sativa HOM05D005021 ORTHO05D006824 0.0e+00 1403.7 977 74.0
Pp3c11_1080 Physcomitrium patens HOM05D005021 ORTHO05D006824 0.0e+00 1379.4 1352 52.1
Pp3c1_6150 Physcomitrium patens HOM05D005021 ORTHO05D006824 0.0e+00 1371.7 1369 51.1
SMO367G0195 Selaginella moellendorffii HOM05D005021 ORTHO05D006824 0.0e+00 1363.2 1322 52.0
FAN16G3288 Fragaria x ananassa HOM05D005021 ORTHO05D006824 0.0e+00 1276.5 716 89.4
CARHR129260 Cardamine hirsuta HOM05D005021 ORTHO05D006824 0.0e+00 1238.0 815 77.1
VMungo0251G0795 Vigna mungo HOM05D005021 ORTHO05D006824 0.0e+00 1231.1 761 80.7
HPP92_017169 Vanilla planifolia HOM05D005021 ORTHO05D006824 0.0e+00 1195.6 881 66.9
Actinidia33677 Actinidia chinensis HOM05D005021 ORTHO05D006824 0.0e+00 1192.2 791 76.7
Potri.015G123900 Populus trichocarpa HOM05D005021 ORTHO05D006824 3.0e-300 1035.8 601 89.2
VMungo0251G3115 Vigna mungo HOM05D005021 ORTHO05D006824 9.7e-299 1030.8 589 86.6
AagrBONN_evm.TU.Sc2ySwM_344.1422 Anthoceros agrestis HOM05D005021 ORTHO05D006824 1.5e-286 990.3 834 57.7
QL11p016288 Quercus lobata HOM05D005021 ORTHO05D006824 5.5e-217 759.2 516 75.0
Oeu060352.1 Olea europaea HOM05D005021 ORTHO05D006824 1.9e-214 750.7 487 78.4
SHI31491 Sapria himalayana HOM05D005021 ORTHO05D006824 1.4e-201 708.0 544 66.9
CBR_g30692 Chara braunii HOM05D005021 ORTHO05D006824 4.1e-188 663.3 1483 30.1
BcaNung06473 Brassica carinata HOM05D005021 ORTHO05D006824 1.3e-162 578.6 536 59.3
HPP92_017178 Vanilla planifolia HOM05D005021 ORTHO05D006824 3.1e-151 540.8 368 74.5
SEGI_39898 Sequoiadendron giganteum HOM05D005021 ORTHO05D006824 1.4e-140 505.4 531 52.4
Medtr4g081610 Medicago truncatula HOM05D005021 ORTHO05D006824 9.3e-124 449.5 541 50.8
Psat0s5010g0080 Pisum sativum HOM05D005021 ORTHO05D006824 5.6e-105 387.1 269 73.2
Psat0s2371g0040 Pisum sativum HOM05D000434 ORTHO05D006824 9.0e-95 353.2 215 80.9
Medtr4g081600 Medicago truncatula HOM05D005021 ORTHO05D006824 1.4e-90 339.3 421 47.0
SEGI_00319 Sequoiadendron giganteum HOM05D005021 ORTHO05D006824 2.0e-86 325.5 192 80.2
Sp2g07020 Schrenkiella parvula HOM05D005021 ORTHO05D006824 6.7e-74 283.9 299 53.8
HPP92_017177 Vanilla planifolia HOM05D005021 ORTHO05D006824 1.3e-61 243.0 145 82.1
Psat0s5010g0040 Pisum sativum HOM05D005021 ORTHO05D004273 7.0e-55 220.7 133 82.0
Potri.015G124200 Populus trichocarpa HOM05D005021 ORTHO05D006824 9.5e-52 210.3 133 83.5
SEGI_02164 Sequoiadendron giganteum HOM05D005021 ORTHO05D006824 2.5e-44 185.7 128 67.2
Oeu003620.1 Olea europaea HOM05D005021 ORTHO05D006824 6.6e-37 161.0 118 68.6
Actinidia33676 Actinidia chinensis HOM05D005021 ORTHO05D006824 2.5e-36 159.1 94 86.2
SEGI_41047 Sequoiadendron giganteum HOM05D005021 ORTHO05D006824 1.6e-35 156.4 160 50.0
BcaB07g31175 Brassica carinata HOM05D005021 ORTHO05D006824 6.2e-35 154.5 89 77.5
SHI31497 Sapria himalayana HOM05D005021 ORTHO05D006824 2.2e-32 146.0 112 64.3
GSVIVG01004787001 Vitis vinifera HOM05D000908 ORTHO05D000789 2.4e-31 142.5 84 76.2
QL05p044008 Quercus lobata HOM05D005021 ORTHO05D006824 3.2e-31 142.1 83 84.3
SGA_v2.0_scaffold88G27325 Striga asiatica HOM05D005021 ORTHO05D006824 1.2e-30 140.2 107 62.6
Lsat_1_v5_gn_6_73941 Lactuca sativa HOM05D005021 ORTHO05D020826 3.6e-27 128.6 154 54.5
MBI13_g07384_MAGBIO Magnolia biondii HOM05D005021 ORTHO05D018021 3.1e-26 125.6 101 66.3
Oeu048766.1 Olea europaea HOM05D001727 ORTHO05D001758 1.3e-24 120.2 86 69.8
Lsat_1_v5_gn_3_96441 Lactuca sativa HOM05D005021 ORTHO05D020826 1.4e-23 116.7 239 37.2
SHI31495 Sapria himalayana HOM05D005021 ORTHO05D006824 4.1e-23 115.2 172 40.1
Zm00001eb290420 Zea mays HOM05D005021 ORTHO05D006824 1.6e-22 113.2 98 56.1
HPP92_017168 Vanilla planifolia HOM05D005021 ORTHO05D006824 3.9e-21 108.6 68 82.4
SGA_v2.0_scaffold181G39736 Striga asiatica HOM05D003210 ORTHO05D000001 2.4e-18 99.4 124 47.6
Potri.015G123001 Populus trichocarpa HOM05D005021 ORTHO05D006824 1.2e-17 97.1 53 90.6
Psat5g003360 Pisum sativum HOM05D005021 ORTHO05D006824 1.5e-17 96.7 90 52.2
Oeu008861.1 Olea europaea HOM05D005021 ORTHO05D006824 5.8e-17 94.7 54 87.0
SEGI_05203 Sequoiadendron giganteum HOM05D005021 ORTHO05D006824 2.4e-15 89.4 50 90.0
Zm00001eb404970 Zea mays HOM05D005021 ORTHO05D006824 9.2e-15 87.4 109 46.8
Psat0s659g0040 Pisum sativum HOM05D005021 ORTHO05D023083 1.7e-13 83.2 100 47.0
Lsat_1_v5_gn_8_50200 Lactuca sativa HOM05D003846 ORTHO05D004726 1.1e-12 80.5 45 86.7
Psat1g136920 Pisum sativum HOM05D005021 ORTHO05D023083 4.3e-12 78.6 50 72.0
Psat2g014320 Pisum sativum HOM05D005021 ORTHO05D023083 4.3e-12 78.6 50 72.0
Lsat_1_v5_gn_2_58240 Lactuca sativa HOM05D003297 ORTHO05D020826 1.3e-11 77.0 42 90.5
Lsat_1_v5_gn_4_123441 Lactuca sativa HOM05D003846 ORTHO05D004726 4.9e-08 65.1 35 91.4
Lsat_1_v5_gn_5_125381 Lactuca sativa HOM05D003846 ORTHO05D020826 4.9e-08 65.1 35 91.4
Lsat_1_v5_gn_5_18841 Lactuca sativa HOM05D003846 ORTHO05D020826 4.9e-08 65.1 35 91.4
Lsat_1_v5_gn_5_43841 Lactuca sativa HOM05D003846 ORTHO05D020826 4.9e-08 65.1 35 91.4
Lsat_1_v5_gn_7_114520 Lactuca sativa HOM05D003846 ORTHO05D004726 4.9e-08 65.1 35 91.4
Medtr3g014450 Medicago truncatula HOM05D005021 ORTHO05D006824 8.4e-08 64.3 54 57.4
Lsat_1_v5_gn_4_70420 Lactuca sativa HOM05D003297 ORTHO05D020826 7.1e-07 61.2 34 88.2


User provided reference genes

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