Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Sabra12G0080100 Salix brachista HOM05D005248 ORTHO05D006409 9.6e-118 426.8 208 100.0
Potri.015G108300 Populus trichocarpa HOM05D005248 ORTHO05D006409 6.3e-93 344.4 186 90.9
Sabra15G0130900 Salix brachista HOM05D001551 ORTHO05D000263 4.8e-85 318.2 252 66.3
Sabra15G0128600 Salix brachista HOM05D005248 ORTHO05D006409 5.9e-83 311.2 286 59.8
Manes.14G043700 Manihot esculenta HOM05D005248 ORTHO05D006409 4.5e-75 285.0 191 74.9
Thecc.03G142000 Theobroma cacao HOM05D005248 ORTHO05D006409 1.5e-70 270.0 183 71.6
COL.COLO4_37271 Corchorus olitorius HOM05D005248 ORTHO05D006409 3.7e-69 265.4 183 71.6
Duzib205G1954 Durio zibethinus HOM05D005248 ORTHO05D006409 4.1e-68 261.9 183 68.3
Cfa018696 Carpinus fangiana HOM05D005248 ORTHO05D006409 1.5e-65 253.4 186 68.8
Gohir.A07G046300 Gossypium hirsutum HOM05D005248 ORTHO05D006409 1.5e-65 253.4 183 68.3
Gohir.D07G050600 Gossypium hirsutum HOM05D005248 ORTHO05D006409 1.9e-65 253.1 183 67.8
Gorai.001G053700 Gossypium raimondii HOM05D005248 ORTHO05D006409 1.9e-65 253.1 183 68.9
Ciclev10032866m.g Citrus clementina HOM05D005248 ORTHO05D006409 2.1e-64 249.6 186 68.3
MD14G1145800 Malus domestica HOM05D005248 ORTHO05D006409 2.1e-64 249.6 183 66.1
CSS0027803 Camellia sinensis var. sinensis HOM05D005248 ORTHO05D006409 3.6e-64 248.8 183 65.6
CSS0031400 Camellia sinensis var. sinensis HOM05D005248 ORTHO05D006409 3.6e-64 248.8 184 65.8
FAN08G1048 Fragaria x ananassa HOM05D005248 ORTHO05D006409 3.6e-64 248.8 186 67.7
GSVIVG01005682001 Vitis vinifera HOM05D005248 ORTHO05D006409 3.6e-64 248.8 185 68.1
RcHm_v2.0_Chr7g0188501 Rosa chinensis HOM05D005248 ORTHO05D006409 4.7e-64 248.4 186 67.7
FvH4_5g09730 Fragaria vesca HOM05D005248 ORTHO05D006409 1.4e-63 246.9 186 67.2
FAN13G2612 Fragaria x ananassa HOM05D005248 ORTHO05D006409 1.4e-63 246.9 186 66.7
QL10p000295 Quercus lobata HOM05D005248 ORTHO05D006409 1.8e-63 246.5 185 65.4
TWI39G0330 Tripterygium wilfordii HOM05D005248 ORTHO05D006409 2.3e-63 246.1 187 66.8
FAN04G2277 Fragaria x ananassa HOM05D005248 ORTHO05D006409 3.0e-63 245.7 189 65.6
Dinv13708 Davidia involucrata HOM05D005248 ORTHO05D006409 1.2e-62 243.8 185 65.9
FAN18G0065 Fragaria x ananassa HOM05D005248 ORTHO05D006409 1.5e-62 243.4 186 66.1
PGR119G0545 Punica granatum HOM05D005248 ORTHO05D006409 1.5e-62 243.4 191 63.9
Prupe.5G140100 Prunus persica HOM05D005248 ORTHO05D006409 2.0e-62 243.0 186 66.1
Hma1.2p1_0452F.1_g155900 Hydrangea macrophylla HOM05D005248 ORTHO05D006409 4.4e-62 241.9 185 64.9
Nitab4.5_0000976g0180 Nicotiana tabacum HOM05D005248 ORTHO05D006409 1.3e-61 240.4 188 64.4
CANSAT78G1265 Cannabis sativa HOM05D005248 ORTHO05D006409 2.2e-61 239.6 196 62.2
Actinidia25510 Actinidia chinensis HOM05D005248 ORTHO05D006409 3.7e-61 238.8 186 65.1
PGSC0003DMG400014171 Solanum tuberosum HOM05D005248 ORTHO05D006409 3.7e-61 238.8 188 63.3
CAN.G1008.49 Capsicum annuum HOM05D005248 ORTHO05D006409 6.3e-61 238.0 188 66.0
Sopen03g037010 Solanum pennellii HOM05D005248 ORTHO05D006409 6.3e-61 238.0 188 63.3
MSTRG.22815 Avicennia marina HOM05D005248 ORTHO05D006409 8.3e-61 237.7 184 64.7
Lj1g0011989 Lotus japonicus HOM05D005248 ORTHO05D006409 1.1e-60 237.3 185 63.2
MD06G1128800 Malus domestica HOM05D005248 ORTHO05D006409 1.1e-60 237.3 184 64.7
TAR371G0926 Trochodendron aralioides HOM05D005248 ORTHO05D006409 1.4e-60 236.9 184 63.6
Cpa.g.sc13.186 Carica papaya HOM05D005248 ORTHO05D006409 2.4e-60 236.1 189 63.5
Atru.chr6.1938 Acer truncatum HOM05D005248 ORTHO05D006409 3.5e-59 232.3 227 55.9
Oeu051184.1 Olea europaea HOM05D005248 ORTHO05D006409 7.8e-59 231.1 183 62.3
Haze_07087 Corylus avellana HOM05D005248 ORTHO05D006409 1.0e-58 230.7 225 56.0
Rhsim08G0198900 Rhododendron simsii HOM05D005248 ORTHO05D006409 1.0e-58 230.7 191 62.8
arahy.Tifrunner.gnm1.ann1.1UQX8S Arachis hypogaea HOM05D005248 ORTHO05D006409 1.3e-58 230.3 183 63.4
Eucgr.H01475 Eucalyptus grandis HOM05D005248 ORTHO05D006409 1.7e-58 229.9 197 59.9
Oeu017204.1 Olea europaea HOM05D005248 ORTHO05D006409 1.7e-58 229.9 184 63.6
Cc04_g05750 Coffea canephora HOM05D005248 ORTHO05D006409 2.3e-58 229.6 185 62.7
Aqoxy4G00470 Aquilegia oxysepala HOM05D005248 ORTHO05D006409 3.8e-58 228.8 184 61.4
arahy.Tifrunner.gnm1.ann1.JK6BKQ Arachis hypogaea HOM05D005248 ORTHO05D006409 5.0e-58 228.4 185 61.6
Nn3g16250 Nelumbo nucifera HOM05D005248 ORTHO05D006409 8.6e-58 227.6 188 61.7
Phvul.009G158800 Phaseolus vulgaris HOM05D005248 ORTHO05D006409 1.1e-57 227.3 185 60.5
Aqoxy5G00839 Aquilegia oxysepala HOM05D005248 ORTHO05D006409 1.5e-57 226.9 185 60.5
THA.LOC104825042 Tarenaya hassleriana HOM05D005248 ORTHO05D006409 1.5e-57 226.9 187 62.0
arahy.Tifrunner.gnm1.ann1.4X1L65 Arachis hypogaea HOM05D005248 ORTHO05D006409 3.3e-57 225.7 183 62.3
arahy.Tifrunner.gnm1.ann1.X29WZH Arachis hypogaea HOM05D005248 ORTHO05D006409 4.3e-57 225.3 207 57.0
Glyma.04G202600 Glycine max HOM05D005248 ORTHO05D006409 7.3e-57 224.6 183 60.7
Sed0027310 Sechium edule HOM05D005248 ORTHO05D006409 7.3e-57 224.6 198 59.1
Hund10025 Selenicereus undatus HOM05D005248 ORTHO05D006409 7.3e-57 224.6 192 58.9
Sc14g0003150 Simmondsia chinensis HOM05D005248 ORTHO05D006409 9.5e-57 224.2 128 79.7
Thhalv10014773m.g Eutrema salsugineum HOM05D005248 ORTHO05D006409 1.2e-56 223.8 191 61.3
Medtr8g096070 Medicago truncatula HOM05D005248 ORTHO05D006409 1.6e-56 223.4 185 60.0
SGA_v2.0_scaffold37G14670 Striga asiatica HOM05D005248 ORTHO05D006409 2.1e-56 223.0 184 62.0
VMungo0251G2692 Vigna mungo HOM05D005248 ORTHO05D006409 2.8e-56 222.6 138 73.2
Lj5A86T66 Lonicera japonica HOM05D005248 ORTHO05D006409 3.6e-56 222.2 191 59.7
Medtr3g098480 Medicago truncatula HOM05D005248 ORTHO05D006409 4.7e-56 221.9 183 58.5
Peaxi162Scf00314g00750 Petunia axillaris HOM05D005248 ORTHO05D006409 8.0e-56 221.1 186 59.7
AL8G25260 Arabidopsis lyrata HOM05D005248 ORTHO05D006409 1.0e-55 220.7 183 60.7
AT5G51040 Arabidopsis thaliana HOM05D005248 ORTHO05D006409 1.0e-55 220.7 186 59.1
CARHR257090 Cardamine hirsuta HOM05D005248 ORTHO05D006409 1.4e-55 220.3 191 60.7
PSO782G4423 Papaver somniferum HOM05D005248 ORTHO05D006409 3.1e-55 219.2 195 56.9
PSO063G1686 Papaver somniferum HOM05D005248 ORTHO05D006409 4.0e-55 218.8 200 57.5
SalBow1G4990 Salvia bowleyana HOM05D005248 ORTHO05D006409 4.0e-55 218.8 183 58.5
ECA247G0315 Erigeron canadensis HOM05D005248 ORTHO05D000263 5.2e-55 218.4 177 59.3
Glyma.06G162900 Glycine max HOM05D005248 ORTHO05D006409 6.8e-55 218.0 183 60.1
SGA_v2.0_scaffold44G16640 Striga asiatica HOM05D005248 ORTHO05D006409 1.2e-54 217.2 181 61.9
Atru.chr10.902 Acer truncatum HOM05D005248 ORTHO05D006409 1.5e-54 216.9 165 64.2
BcaC03g14629 Brassica carinata HOM05D005248 ORTHO05D006409 2.6e-54 216.1 186 60.2
Carub.0008s1104 Capsella rubella HOM05D005248 ORTHO05D006409 7.5e-54 214.5 192 58.3
HanXRQChr02g0034361 Helianthus annuus HOM05D005248 ORTHO05D006409 7.5e-54 214.5 197 57.4
Lsat_1_v5_gn_1_30140 Lactuca sativa HOM05D005248 ORTHO05D006409 9.8e-54 214.2 189 57.1
BcaB05g24022 Brassica carinata HOM05D005248 ORTHO05D006409 1.3e-53 213.8 191 59.2
AUR62032207 Chenopodium quinoa HOM05D005248 ORTHO05D006409 1.3e-53 213.8 184 57.6
AUR62043379 Chenopodium quinoa HOM05D005248 ORTHO05D006409 1.3e-53 213.8 184 58.2
Hund02516 Selenicereus undatus HOM05D005248 ORTHO05D006409 1.3e-53 213.8 180 60.0
AUR62043864 Chenopodium quinoa HOM05D005248 ORTHO05D006409 2.9e-53 212.6 184 57.6
Psat7g039840 Pisum sativum HOM05D005248 ORTHO05D006409 2.9e-53 212.6 185 57.8
Ca_16820_v3 Cicer arietinum L. HOM05D000402 ORTHO05D000263 3.7e-53 212.2 158 62.7
CsaV3_2G009360 Cucumis sativus L. HOM05D005248 ORTHO05D006409 3.7e-53 212.2 194 53.1
Nitab4.5_0012624g0030 Nicotiana tabacum HOM05D005248 ORTHO05D006409 3.7e-53 212.2 150 68.0
EL10Ac5g11271 Beta vulgaris HOM05D005248 ORTHO05D006409 4.9e-53 211.8 184 57.6
MELO3C008773.2 Cucumis melo HOM05D005248 ORTHO05D006409 4.9e-53 211.8 202 53.5
CDE06G0011 Ceratophyllum demersum HOM05D005248 ORTHO05D006409 6.4e-53 211.5 183 59.0
Migut.I00662 Erythranthe guttata HOM05D005248 ORTHO05D006409 6.4e-53 211.5 184 59.8
A10p08030 Brassica napus HOM05D005248 ORTHO05D006409 8.3e-53 211.1 189 57.7
CiPaw.12G000300 Carya illinoinensis HOM05D005248 ORTHO05D006409 8.3e-53 211.1 165 63.6
A02p12520 Brassica napus HOM05D005248 ORTHO05D006409 1.4e-52 210.3 188 60.6
DCAR_025638 Daucus carota HOM05D005248 ORTHO05D006409 1.4e-52 210.3 193 56.5
vmacro19110 Vaccinium macrocarpon HOM05D005248 ORTHO05D006409 1.4e-52 210.3 173 61.3
BraSC35t45996Z Brassica rapa HOM05D005248 ORTHO05D006409 2.4e-52 209.5 185 57.3
ClCG11G000550 Citrullus lanatus HOM05D005248 ORTHO05D006409 3.2e-52 209.1 201 54.2
Lalb_Chr12g0202581 Lupinus albus HOM05D005248 ORTHO05D006409 5.4e-52 208.4 183 57.4
Sp6g13210 Schrenkiella parvula HOM05D005248 ORTHO05D006409 5.4e-52 208.4 191 57.6
Ah.11g047000 Amaranthus hybridus HOM05D005248 ORTHO05D006409 7.0e-52 208.0 184 55.4
Glyma.08G007100 Glycine max HOM05D005248 ORTHO05D006409 9.2e-52 207.6 129 72.1
Lj9C488G13 Lonicera japonica HOM05D005248 ORTHO05D006409 1.6e-51 206.8 115 76.5
BolC2t08204H Brassica oleracea HOM05D005248 ORTHO05D006409 3.5e-51 205.7 195 58.5
vmacro19116 Vaccinium macrocarpon HOM05D000402 ORTHO05D000263 4.6e-51 205.3 220 51.4
BraA02t06314Z Brassica rapa HOM05D005248 ORTHO05D006409 7.8e-51 204.5 195 59.0
Aa31LG3G7530 Aethionema arabicum HOM05D005248 ORTHO05D006409 1.0e-50 204.1 204 53.4
BolC9t56844H Brassica oleracea HOM05D005248 ORTHO05D006409 1.3e-50 203.8 195 56.4
vmacro16762 Vaccinium macrocarpon HOM05D005248 ORTHO05D006409 1.3e-50 203.8 148 66.2
Zm00001eb198100 Zea mays HOM05D005248 ORTHO05D006409 1.3e-50 203.8 129 69.8
unitig_61.g26221 Utricularia gibba HOM05D005248 ORTHO05D006409 2.3e-50 203.0 187 56.1
ATR0582G036 Amborella trichopoda HOM05D005248 ORTHO05D006409 3.9e-50 202.2 183 58.5
HPP92_006440 Vanilla planifolia HOM05D005248 ORTHO05D006409 8.6e-50 201.1 185 57.8
Os11g0528300 Oryza sativa ssp. japonica HOM05D005248 ORTHO05D006409 1.2e-48 197.2 129 69.8
Nitab4.5_0010893g0020 Nicotiana tabacum HOM05D005248 ORTHO05D006409 3.6e-48 195.7 158 63.9
C09p39650 Brassica napus HOM05D005248 ORTHO05D006409 2.3e-47 193.0 194 54.1
CSS0028005 Camellia sinensis var. sinensis HOM05D005248 ORTHO05D006409 2.0e-46 189.9 160 60.6
PSO541G2841 Papaver somniferum HOM05D005248 ORTHO05D006409 3.7e-45 185.7 113 70.8
C02p20620 Brassica napus HOM05D005248 ORTHO05D006409 3.2e-44 182.6 114 71.9
Lsat_1_v5_gn_9_37901 Lactuca sativa HOM05D005248 ORTHO05D006409 2.7e-43 179.5 118 68.6
Pp3c16_25170 Physcomitrium patens HOM05D005248 ORTHO05D006409 1.2e-38 164.1 125 57.6
SMO146G0118 Selaginella moellendorffii HOM05D005248 ORTHO05D006409 1.5e-38 163.7 123 58.5
Mapoly0022s0036 Marchantia polymorpha HOM05D005248 ORTHO05D006409 4.4e-38 162.2 124 58.9
Gohir.A07G044532 Gossypium hirsutum HOM05D005248 ORTHO05D006409 8.3e-37 157.9 87 77.0
Rhsim12G0181600 Rhododendron simsii HOM05D005248 ORTHO05D006409 5.1e-34 148.7 106 67.0
Lj4g0025558 Lotus japonicus HOM05D005248 ORTHO05D006409 1.5e-30 137.1 148 52.0
PSO675G1946 Papaver somniferum HOM05D005248 ORTHO05D006409 1.3e-29 134.0 121 57.9
Zm00001eb113310 Zea mays HOM05D005248 ORTHO05D006409 1.9e-28 130.2 76 72.4
Cre12.g550750 Chlamydomonas reinhardtii HOM05D005248 ORTHO05D006409 4.2e-28 129.0 130 49.2
TPR.G12753 Trifolium pratense HOM05D005248 ORTHO05D006409 4.2e-28 129.0 72 75.0
Gohir.A11G038833 Gossypium hirsutum HOM05D005248 ORTHO05D006409 5.4e-28 128.6 86 66.3
Nitab4.5_0002540g0030 Nicotiana tabacum HOM05D005248 ORTHO05D006409 8.7e-26 121.3 130 54.6
BcaC04g20744 Brassica carinata HOM05D005248 ORTHO05D006409 1.6e-24 117.1 72 68.1
QL10p017282 Quercus lobata HOM05D005248 ORTHO05D006409 3.1e-23 112.8 65 70.8
TPR.G20580 Trifolium pratense HOM05D005248 ORTHO05D006409 1.3e-21 107.5 111 53.2
PRCOL_00003706 Prasinoderma coloniale HOM05D005248 ORTHO05D006409 8.4e-21 104.8 117 41.0
MCO01G238 Micromonas commoda HOM05D005248 ORTHO05D006409 2.7e-19 99.8 102 43.1
CAN.G412.4 Capsicum annuum HOM05D005248 ORTHO05D006409 4.6e-19 99.0 59 71.2
Gorai.007G045300 Gossypium raimondii HOM05D005248 ORTHO05D006409 6.9e-15 85.1 87 57.5
TPR.G21935 Trifolium pratense HOM05D005248 ORTHO05D006409 1.1e-09 67.8 35 74.3
AagrBONN_evm.TU.Sc2ySwM_368.2623 Anthoceros agrestis HOM05D005248 ORTHO05D006409 4.8e-08 62.4 91 41.8


User provided reference genes

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