Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Sabra12G0075900 Salix brachista HOM05D005222 ORTHO05D006230 4.7e-58 227.6 115 100.0
Potri.012G103400 Populus trichocarpa HOM05D005222 ORTHO05D006230 3.0e-28 128.6 115 64.3
Potri.015G102000 Populus trichocarpa HOM05D005222 ORTHO05D006230 4.3e-27 124.8 115 61.7
Sabra15G0122200 Salix brachista HOM05D005222 ORTHO05D006230 4.3e-27 124.8 115 61.7
PGSC0003DMG400027040 Solanum tuberosum HOM05D005222 ORTHO05D006230 2.1e-26 122.5 115 59.1
TWI39G0019 Tripterygium wilfordii HOM05D005222 ORTHO05D006230 2.4e-25 119.0 115 59.1
Actinidia25544 Actinidia chinensis HOM05D005222 ORTHO05D006230 4.1e-25 118.2 71 80.3
Dinv23190 Davidia involucrata HOM05D005222 ORTHO05D006230 6.9e-25 117.5 115 58.3
Rhsim08G0194200 Rhododendron simsii HOM05D005222 ORTHO05D006230 6.9e-25 117.5 71 78.9
PSO063G7191 Papaver somniferum HOM05D005222 ORTHO05D006230 9.0e-25 117.1 66 84.8
PSO782G1904 Papaver somniferum HOM05D005222 ORTHO05D006230 9.0e-25 117.1 66 84.8
TWI23G0048 Tripterygium wilfordii HOM05D005222 ORTHO05D006230 1.5e-24 116.3 72 81.9
GSVIVG01008600001 Vitis vinifera HOM05D005222 ORTHO05D006230 1.5e-24 116.3 72 79.2
Manes.06G123800 Manihot esculenta HOM05D005222 ORTHO05D006230 2.0e-24 115.9 72 80.6
CSS0012412 Camellia sinensis var. sinensis HOM05D005222 ORTHO05D006230 2.6e-24 115.5 62 90.3
Thecc.03G136000 Theobroma cacao HOM05D005222 ORTHO05D006230 4.5e-24 114.8 72 80.6
CSS0000670 Camellia sinensis var. sinensis HOM05D005222 ORTHO05D006230 7.6e-24 114.0 62 88.7
Nn3g16353 Nelumbo nucifera HOM05D005222 ORTHO05D006230 7.6e-24 114.0 115 55.7
Nitab4.5_0001464g0100 Nicotiana tabacum HOM05D005222 ORTHO05D006230 1.0e-23 113.6 115 54.8
PGR083G1056 Punica granatum HOM05D005222 ORTHO05D006230 1.0e-23 113.6 70 80.0
Carub.0008s1080 Capsella rubella HOM05D005222 ORTHO05D006230 1.3e-23 113.2 63 85.7
Peaxi162Scf01064g00238 Petunia axillaris HOM05D005222 ORTHO05D006230 1.3e-23 113.2 115 54.8
Eucgr.B00077 Eucalyptus grandis HOM05D005222 ORTHO05D006230 1.7e-23 112.8 72 77.8
CSS0034357 Camellia sinensis var. sinensis HOM05D005222 ORTHO05D006230 2.2e-23 112.5 129 51.2
Gohir.D12G194600 Gossypium hirsutum HOM05D005222 ORTHO05D006230 2.2e-23 112.5 115 54.8
Manes.14G047400 Manihot esculenta HOM05D005222 ORTHO05D006230 2.2e-23 112.5 72 77.8
Sc04g0000390 Simmondsia chinensis HOM05D005222 ORTHO05D006230 2.2e-23 112.5 115 53.9
Solyc06g072600.3 Solanum lycopersicum HOM05D005222 ORTHO05D006230 2.2e-23 112.5 115 53.9
Sopen06g028950 Solanum pennellii HOM05D005222 ORTHO05D006230 2.2e-23 112.5 115 53.9
Cfa018742 Carpinus fangiana HOM05D005222 ORTHO05D006230 2.9e-23 112.1 75 73.3
Gohir.A12G192500 Gossypium hirsutum HOM05D005222 ORTHO05D006230 2.9e-23 112.1 115 54.8
Ciclev10033230m.g Citrus clementina HOM05D005222 ORTHO05D006230 3.8e-23 111.7 72 75.0
Sp6g12920 Schrenkiella parvula HOM05D005222 ORTHO05D006230 3.8e-23 111.7 65 81.5
Aa31LG3G7230 Aethionema arabicum HOM05D005222 ORTHO05D006230 6.5e-23 110.9 66 80.3
EL10Ac5g11344 Beta vulgaris HOM05D005222 ORTHO05D006230 6.5e-23 110.9 115 52.2
Hma1.2p1_0168F.1_g074260 Hydrangea macrophylla HOM05D005222 ORTHO05D006230 6.5e-23 110.9 115 52.2
Lsat_1_v5_gn_4_83361 Lactuca sativa HOM05D005222 ORTHO05D006230 6.5e-23 110.9 67 77.6
MBI07_g24748_MAGBIO Magnolia biondii HOM05D005222 ORTHO05D006230 6.5e-23 110.9 72 76.4
Atru.chr6.1879 Acer truncatum HOM05D005222 ORTHO05D006230 8.4e-23 110.5 112 54.5
Haze_07194 Corylus avellana HOM05D005222 ORTHO05D006230 8.4e-23 110.5 66 80.3
Dinv11207 Davidia involucrata HOM05D005222 ORTHO05D006230 8.4e-23 110.5 115 53.0
Glyma.04G198900 Glycine max HOM05D005222 ORTHO05D006230 8.4e-23 110.5 72 73.6
CAN.G65.111 Capsicum annuum HOM05D005222 ORTHO05D006230 1.1e-22 110.2 115 52.2
DCAR_016362 Daucus carota HOM05D005222 ORTHO05D006230 1.1e-22 110.2 115 50.4
MD06G1135800 Malus domestica HOM05D005222 ORTHO05D006230 1.1e-22 110.2 115 52.2
Hund02474 Selenicereus undatus HOM05D005222 ORTHO05D006230 1.1e-22 110.2 65 81.5
Sc22g0003810 Simmondsia chinensis HOM05D005222 ORTHO05D006230 1.1e-22 110.2 115 53.0
vmacro16739 Vaccinium macrocarpon HOM05D005222 ORTHO05D006230 1.1e-22 110.2 64 84.4
HanXRQChr09g0273701 Helianthus annuus HOM05D005222 ORTHO05D006230 1.4e-22 109.8 115 51.3
Nitab4.5_0011312g0030 Nicotiana tabacum HOM05D005222 ORTHO05D006230 1.4e-22 109.8 115 53.0
AT5G50810 Arabidopsis thaliana HOM05D005222 ORTHO05D006230 1.9e-22 109.4 63 82.5
CiPaw.11G003300 Carya illinoinensis HOM05D005222 ORTHO05D006230 1.9e-22 109.4 66 78.8
Phvul.009G163100 Phaseolus vulgaris HOM05D005222 ORTHO05D006230 1.9e-22 109.4 66 77.3
CANSAT80G0210 Cannabis sativa HOM05D005222 ORTHO05D006230 3.2e-22 108.6 113 51.3
ECA232G5061 Erigeron canadensis HOM05D005222 ORTHO05D006230 3.2e-22 108.6 65 76.9
MD14G1151000 Malus domestica HOM05D005222 ORTHO05D006230 3.2e-22 108.6 115 51.3
Peaxi162Scf00516g00032 Petunia axillaris HOM05D005222 ORTHO05D006230 3.2e-22 108.6 74 73.0
Prupe.5G146200 Prunus persica HOM05D005222 ORTHO05D006230 4.2e-22 108.2 115 50.4
Gorai.008G209300 Gossypium raimondii HOM05D005222 ORTHO05D006230 5.5e-22 107.8 76 71.1
Rhsim12G0178200 Rhododendron simsii HOM05D005222 ORTHO05D006230 5.5e-22 107.8 114 52.6
TAR374G1676 Trochodendron aralioides HOM05D005222 ORTHO05D006230 5.5e-22 107.8 72 73.6
AUR62029544 Chenopodium quinoa HOM05D005222 ORTHO05D006230 7.2e-22 107.5 65 76.9
AUR62034814 Chenopodium quinoa HOM05D005222 ORTHO05D006230 7.2e-22 107.5 65 76.9
Cc04_g09830 Coffea canephora HOM05D005222 ORTHO05D006230 7.2e-22 107.5 66 77.3
CsaV3_1G000290 Cucumis sativus L. HOM05D005222 ORTHO05D006230 7.2e-22 107.5 63 81.0
Duzib084G0042 Durio zibethinus HOM05D005222 ORTHO05D006230 7.2e-22 107.5 66 77.3
ClCG06G018150 Citrullus lanatus HOM05D005222 ORTHO05D006230 9.3e-22 107.1 65 76.9
RcHm_v2.0_Chr7g0189291 Rosa chinensis HOM05D005222 ORTHO05D006230 9.3e-22 107.1 65 76.9
CARHR257460 Cardamine hirsuta HOM05D005222 ORTHO05D006230 1.2e-21 106.7 69 73.9
Duzib205G1725 Durio zibethinus HOM05D005222 ORTHO05D006230 1.2e-21 106.7 66 77.3
Ca_16071_v3 Cicer arietinum L. HOM05D005222 ORTHO05D006230 1.6e-21 106.3 72 70.8
Thhalv10015178m.g Eutrema salsugineum HOM05D005222 ORTHO05D006230 1.6e-21 106.3 63 79.4
TAR629G0657 Trochodendron aralioides HOM05D005222 ORTHO05D006230 1.6e-21 106.3 64 78.1
SalBow5G1462 Salvia bowleyana HOM05D005222 ORTHO05D006230 2.1e-21 105.9 111 51.4
CAN.G758.13 Capsicum annuum HOM05D005222 ORTHO05D006230 2.7e-21 105.5 72 70.8
FAN08G1832 Fragaria x ananassa HOM05D005222 ORTHO05D006230 2.7e-21 105.5 65 73.8
CDE02G1328 Ceratophyllum demersum HOM05D005222 ORTHO05D006230 3.5e-21 105.1 72 66.7
THA.LOC104811566 Tarenaya hassleriana HOM05D005222 ORTHO05D006230 3.5e-21 105.1 65 76.9
FAN18G1799 Fragaria x ananassa HOM05D005222 ORTHO05D006230 4.6e-21 104.8 115 47.8
Glyma.06G166600 Glycine max HOM05D005222 ORTHO05D006230 4.6e-21 104.8 66 74.2
Lalb_Chr08g0237411 Lupinus albus HOM05D005222 ORTHO05D006230 4.6e-21 104.8 66 74.2
unitig_0.g1255 Utricularia gibba HOM05D005222 ORTHO05D006230 4.6e-21 104.8 68 73.5
MELO3C026182.2 Cucumis melo HOM05D005222 ORTHO05D006230 6.1e-21 104.4 60 83.3
FAN13G0479 Fragaria x ananassa HOM05D005222 ORTHO05D006230 6.1e-21 104.4 65 72.3
Lj1g0004473 Lotus japonicus HOM05D005222 ORTHO05D006230 1.8e-20 102.8 66 74.2
CDE06G2816 Ceratophyllum demersum HOM05D005222 ORTHO05D006230 2.3e-20 102.4 72 63.9
ClCG04G004850 Citrullus lanatus HOM05D005222 ORTHO05D006230 2.3e-20 102.4 60 81.7
GSVIVG01033034001 Vitis vinifera HOM05D005222 ORTHO05D006230 2.3e-20 102.4 72 68.1
FvH4_5g08990 Fragaria vesca HOM05D005222 ORTHO05D006230 3.0e-20 102.1 65 70.8
PGSC0003DMG400004338 Solanum tuberosum HOM05D005222 ORTHO05D006230 3.0e-20 102.1 74 67.6
Sopen03g028390 Solanum pennellii HOM05D005222 ORTHO05D006230 3.9e-20 101.7 74 67.6
FAN04G2766 Fragaria x ananassa HOM05D005222 ORTHO05D006230 6.7e-20 100.9 65 69.2
Nitab4.5_0000033g0050 Nicotiana tabacum HOM05D005222 ORTHO05D006230 6.7e-20 100.9 65 75.4
QL05p049336 Quercus lobata HOM05D005222 ORTHO05D006230 8.7e-20 100.5 70 68.6
QL10p001732 Quercus lobata HOM05D005222 ORTHO05D006230 8.7e-20 100.5 70 68.6
Migut.D01295 Erythranthe guttata HOM05D005222 ORTHO05D006230 1.1e-19 100.1 62 71.0
Medtr3g098820 Medicago truncatula HOM05D005222 ORTHO05D006230 1.1e-19 100.1 72 63.9
VMungo0464G1435 Vigna mungo HOM05D005222 ORTHO05D006230 1.5e-19 99.8 58 77.6
COL.COLO4_16662 Corchorus olitorius HOM05D005222 ORTHO05D006230 2.5e-19 99.0 57 84.2
AL8G24980 Arabidopsis lyrata HOM05D005222 ORTHO05D006230 3.3e-19 98.6 54 85.2
ATR0582G313 Amborella trichopoda HOM05D005222 ORTHO05D006230 4.3e-19 98.2 70 64.3
Zm00001eb036900 Zea mays HOM05D005222 ORTHO05D006230 4.3e-19 98.2 62 69.4
A03p16580 Brassica napus HOM05D005222 ORTHO05D006230 5.7e-19 97.8 64 71.9
C03p19510 Brassica napus HOM05D005222 ORTHO05D006230 5.7e-19 97.8 64 71.9
BolC3t14332H Brassica oleracea HOM05D005222 ORTHO05D006230 5.7e-19 97.8 64 71.9
BraA03t10945Z Brassica rapa HOM05D005222 ORTHO05D006230 5.7e-19 97.8 64 71.9
CARHR232420 Cardamine hirsuta HOM05D005222 ORTHO05D006230 5.7e-19 97.8 62 72.6
Solyc03g097640.3 Solanum lycopersicum HOM05D005222 ORTHO05D006230 5.7e-19 97.8 70 67.1
Lj4g0026334 Lotus japonicus HOM05D005222 ORTHO05D006230 7.4e-19 97.4 66 68.2
Pp3c22_9040 Physcomitrium patens HOM05D005222 ORTHO05D006230 2.2e-18 95.9 70 61.4
Os08g0535600 Oryza sativa ssp. japonica HOM05D005222 ORTHO05D006230 2.8e-18 95.5 68 63.2
Glyma.05G202400 Glycine max HOM05D005222 ORTHO05D006230 3.7e-18 95.1 66 66.7
Zm00001eb175490 Zea mays HOM05D005222 ORTHO05D006230 3.7e-18 95.1 61 68.9
Sc07g0003580 Simmondsia chinensis HOM05D005222 ORTHO05D006230 6.3e-18 94.4 66 65.2
TPR.G21582 Trifolium pratense HOM05D005222 ORTHO05D006230 6.3e-18 94.4 66 65.2
SEGI_36916 Sequoiadendron giganteum HOM05D005222 ORTHO05D006230 8.2e-18 94.0 67 64.2
A01p16290 Brassica napus HOM05D005222 ORTHO05D006230 1.1e-17 93.6 112 47.3
BcaNung03992 Brassica carinata HOM05D005222 ORTHO05D006230 1.8e-17 92.8 112 46.4
Mapoly0022s0111 Marchantia polymorpha HOM05D005222 ORTHO05D006230 1.8e-17 92.8 64 64.1
BcaC09g50823 Brassica carinata HOM05D005222 ORTHO05D006230 2.4e-17 92.4 112 46.4
C01p20320 Brassica napus HOM05D005222 ORTHO05D006230 2.4e-17 92.4 112 46.4
BolC1t01961H Brassica oleracea HOM05D005222 ORTHO05D006230 2.4e-17 92.4 112 46.4
BraA01t01568Z Brassica rapa HOM05D005222 ORTHO05D006230 2.4e-17 92.4 112 46.4
MBI13_g38964_MAGBIO Magnolia biondii HOM05D005222 ORTHO05D006230 4.1e-17 91.7 72 55.6
C06p12810 Brassica napus HOM05D005222 ORTHO05D006230 9.0e-17 90.5 62 67.7
Pp3c18_15660 Physcomitrium patens HOM05D005222 ORTHO05D006230 1.2e-16 90.1 66 60.6
arahy.Tifrunner.gnm1.ann1.122S7D Arachis hypogaea HOM05D005222 ORTHO05D006230 1.5e-16 89.7 66 60.6
BcaC08g43896 Brassica carinata HOM05D005222 ORTHO05D006230 1.5e-16 89.7 62 67.7
arahy.Tifrunner.gnm1.ann1.5QWD0G Arachis hypogaea HOM05D005222 ORTHO05D006230 2.0e-16 89.4 66 60.6
Psat5g053520 Pisum sativum HOM05D001135 ORTHO05D006230 2.0e-16 89.4 53 71.7
ATR1096G067 Amborella trichopoda HOM05D005222 ORTHO05D006230 4.5e-16 88.2 69 58.0
Aqoxy3G01691 Aquilegia oxysepala HOM05D005222 ORTHO05D006230 5.9e-16 87.8 70 60.0
CAN.G101.22 Capsicum annuum HOM05D005222 ORTHO05D006230 2.9e-15 85.5 55 70.9
Aqoxy5G03239 Aquilegia oxysepala HOM05D005222 ORTHO05D006230 8.5e-15 84.0 80 47.5
Os12g0128600 Oryza sativa ssp. japonica HOM05D005222 ORTHO05D006230 7.2e-14 80.9 62 58.1
Os11g0131700 Oryza sativa ssp. japonica HOM05D005222 ORTHO05D006230 9.4e-14 80.5 62 58.1
SMO356G0192 Selaginella moellendorffii HOM05D005222 ORTHO05D006230 9.4e-14 80.5 59 55.9
Zm00001eb163550 Zea mays HOM05D005222 ORTHO05D006230 1.2e-13 80.1 60 58.3
Nn7g37129 Nelumbo nucifera HOM05D005222 ORTHO05D006230 2.7e-13 79.0 53 64.2
HPP92_001283 Vanilla planifolia HOM05D005222 ORTHO05D006230 4.3e-11 71.6 59 52.5
FvH4_5g07110 Fragaria vesca HOM05D005222 ORTHO05D006230 7.4e-11 70.9 62 58.1
MCO14G257 Micromonas commoda HOM05D005222 ORTHO05D006230 4.8e-10 68.2 68 54.4
FAN08G2230 Fragaria x ananassa HOM05D005222 ORTHO05D006230 4.1e-09 65.1 62 53.2
AagrBONN_evm.TU.Sc2ySwM_362.856 Anthoceros agrestis HOM05D005222 ORTHO05D006230 6.5e-07 57.8 51 54.9
ClCG01G001340 Citrullus lanatus HOM05D007599 ORTHO05D009548 5.5e-06 54.7 78 41.0
Sopen10g024670 Solanum pennellii HOM05D007599 ORTHO05D009548 7.2e-06 54.3 79 39.2
PRCOL_00002805 Prasinoderma coloniale HOM05D003727 ORTHO05D034196 9.4e-06 53.9 68 36.8


User provided reference genes

Program Settings