Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Sabra12G0070400 Salix brachista HOM05D004543 ORTHO05D006042 1.2e-220 769.6 405 100.0
Potri.012G096100 Populus trichocarpa HOM05D004543 ORTHO05D006042 1.8e-197 692.6 387 92.0
Potri.015G094000 Populus trichocarpa HOM05D004543 ORTHO05D006042 7.5e-191 670.6 389 88.7
Sabra15G0115500 Salix brachista HOM05D004543 ORTHO05D006042 3.7e-190 668.3 389 88.4
Manes.06G118300 Manihot esculenta HOM05D004543 ORTHO05D006042 9.1e-181 637.1 388 84.0
Atru.chr9.1076 Acer truncatum HOM05D004543 ORTHO05D006042 4.7e-177 624.8 382 83.2
COL.COLO4_26675 Corchorus olitorius HOM05D004543 ORTHO05D006042 6.8e-176 620.9 387 82.2
RcHm_v2.0_Chr7g0190411 Rosa chinensis HOM05D004543 ORTHO05D006042 7.5e-175 617.5 383 81.5
QL10p004063 Quercus lobata HOM05D004543 ORTHO05D006042 1.7e-174 616.3 388 80.9
FAN04G2916 Fragaria x ananassa HOM05D004543 ORTHO05D006042 3.7e-174 615.1 383 81.5
FAN13G0766 Fragaria x ananassa HOM05D004543 ORTHO05D006042 1.1e-173 613.6 374 82.9
Cfa018837 Carpinus fangiana HOM05D004543 ORTHO05D006042 1.4e-173 613.2 381 81.6
Thecc.06G039500 Theobroma cacao HOM05D004543 ORTHO05D006042 2.4e-173 612.5 386 81.3
Haze_07231 Corylus avellana HOM05D004543 ORTHO05D006042 5.4e-173 611.3 381 81.4
FvH4_5g08050 Fragaria vesca HOM05D004543 ORTHO05D006042 2.7e-172 609.0 400 81.8
FAN18G3295 Fragaria x ananassa HOM05D004543 ORTHO05D006042 2.7e-172 609.0 400 81.8
Psat0s3466g0040 Pisum sativum HOM05D004543 ORTHO05D006042 3.5e-172 608.6 379 81.3
MD06G1143400 Malus domestica HOM05D004543 ORTHO05D006042 5.9e-172 607.8 387 81.1
Ciclev10018979m.g Citrus clementina HOM05D004543 ORTHO05D006042 2.3e-171 605.9 389 79.7
Duzib138G1537 Durio zibethinus HOM05D004543 ORTHO05D006042 2.9e-171 605.5 386 80.8
Ca_00911_v3 Cicer arietinum L. HOM05D004543 ORTHO05D006042 5.0e-171 604.7 387 80.6
MD14G1158600 Malus domestica HOM05D004543 ORTHO05D006042 8.6e-171 604.0 387 80.9
Gohir.D11G175000 Gossypium hirsutum HOM05D004543 ORTHO05D006042 1.1e-170 603.6 385 79.7
Phvul.003G210200 Phaseolus vulgaris HOM05D004543 ORTHO05D006042 1.1e-170 603.6 387 79.6
VMungo1215G3183 Vigna mungo HOM05D004543 ORTHO05D006042 2.5e-170 602.4 387 79.6
Gorai.007G187600 Gossypium raimondii HOM05D004543 ORTHO05D006042 4.3e-170 601.7 385 79.2
Lj4g0012876 Lotus japonicus HOM05D004543 ORTHO05D006042 7.3e-170 600.9 386 80.3
Lalb_Chr07g0183361 Lupinus albus HOM05D004543 ORTHO05D006042 9.5e-170 600.5 387 80.4
CiPaw.11G008900 Carya illinoinensis HOM05D004543 ORTHO05D006042 1.6e-169 599.7 388 80.2
Gohir.A11G168800 Gossypium hirsutum HOM05D004543 ORTHO05D006042 2.8e-169 599.0 385 79.5
Prupe.5G152600 Prunus persica HOM05D004543 ORTHO05D006042 2.8e-169 599.0 387 80.4
Medtr4g103610 Medicago truncatula HOM05D004543 ORTHO05D006042 3.6e-169 598.6 379 80.2
Glyma.17G129100 Glycine max HOM05D004543 ORTHO05D006042 8.0e-169 597.4 387 79.3
arahy.Tifrunner.gnm1.ann1.28ZGNX Arachis hypogaea HOM05D004543 ORTHO05D006042 2.3e-168 595.9 387 78.8
arahy.Tifrunner.gnm1.ann1.9QW7J0 Arachis hypogaea HOM05D004543 ORTHO05D006042 4.0e-168 595.1 387 78.8
CANSAT80G2145 Cannabis sativa HOM05D004543 ORTHO05D006042 5.2e-168 594.7 381 79.8
Glyma.05G047300 Glycine max HOM05D004543 ORTHO05D006042 2.0e-167 592.8 387 78.0
TWI23G0493 Tripterygium wilfordii HOM05D004543 ORTHO05D006042 4.4e-167 591.7 384 79.2
Eucgr.B00121 Eucalyptus grandis HOM05D004543 ORTHO05D006042 2.4e-165 585.9 381 78.7
Dinv11159 Davidia involucrata HOM05D004543 ORTHO05D006042 4.1e-165 585.1 387 77.5
Cpa.g.sc13.138 Carica papaya HOM05D004543 ORTHO05D006042 2.0e-164 582.8 387 78.0
PGR083G0162 Punica granatum HOM05D004543 ORTHO05D006042 6.6e-163 577.8 393 75.6
GSVIVG01008523001 Vitis vinifera HOM05D004543 ORTHO05D006042 8.6e-163 577.4 383 77.0
Hma1.2p1_1271F.1_g271760 Hydrangea macrophylla HOM05D004543 ORTHO05D006042 5.6e-162 574.7 383 75.7
TPR.G19235 Trifolium pratense HOM05D004543 ORTHO05D006042 9.5e-162 573.9 432 70.8
AL7G28340 Arabidopsis lyrata HOM05D004543 ORTHO05D006042 2.1e-161 572.8 388 75.0
AT4G24840 Arabidopsis thaliana HOM05D004543 ORTHO05D006042 1.1e-160 570.5 388 75.0
Aa31LG7G11000 Aethionema arabicum HOM05D004543 ORTHO05D006042 1.4e-160 570.1 381 75.3
ClCG11G005570 Citrullus lanatus HOM05D004543 ORTHO05D006042 1.4e-160 570.1 382 76.2
AUR62029871 Chenopodium quinoa HOM05D004543 ORTHO05D006042 2.3e-160 569.3 390 75.4
Carub.0007s1621 Capsella rubella HOM05D004543 ORTHO05D006042 5.2e-160 568.2 388 74.7
CSS0037462 Camellia sinensis var. sinensis HOM05D004543 ORTHO05D006042 2.0e-159 566.2 382 75.9
CsaV3_6G002430 Cucumis sativus L. HOM05D004543 ORTHO05D006042 2.6e-159 565.8 382 75.9
Thhalv10024490m.g Eutrema salsugineum HOM05D004543 ORTHO05D006042 1.7e-158 563.1 388 73.7
Hund02429 Selenicereus undatus HOM05D004543 ORTHO05D006042 2.9e-158 562.4 382 75.4
EL10As4g23416 Beta vulgaris HOM05D004543 ORTHO05D006042 4.9e-158 561.6 384 74.7
Sed0023388 Sechium edule HOM05D004543 ORTHO05D006042 1.2e-156 557.0 383 74.9
Actinidia15838 Actinidia chinensis HOM05D004543 ORTHO05D006042 1.6e-156 556.6 381 74.0
Aqoxy5G03415 Aquilegia oxysepala HOM05D004543 ORTHO05D006042 2.7e-156 555.8 375 74.4
Actinidia25587 Actinidia chinensis HOM05D004543 ORTHO05D006042 3.5e-156 555.4 381 74.5
vmacro19212 Vaccinium macrocarpon HOM05D004543 ORTHO05D006042 1.3e-155 553.5 389 72.8
C01p20140 Brassica napus HOM05D004543 ORTHO05D006042 8.6e-155 550.8 384 73.2
BolC1t01943H Brassica oleracea HOM05D004543 ORTHO05D006042 8.6e-155 550.8 384 73.2
Sed0026192 Sechium edule HOM05D004543 ORTHO05D006042 1.1e-154 550.4 383 74.4
Nn3g16500 Nelumbo nucifera HOM05D004543 ORTHO05D006042 1.5e-154 550.1 382 74.3
TAR622G0482 Trochodendron aralioides HOM05D004543 ORTHO05D006042 1.5e-154 550.1 380 74.7
Sp7g22830 Schrenkiella parvula HOM05D004543 ORTHO05D006042 1.9e-154 549.7 388 72.2
Lsat_1_v5_gn_4_76761 Lactuca sativa HOM05D004543 ORTHO05D006042 2.5e-154 549.3 385 71.4
HanXRQChr09g0273071 Helianthus annuus HOM05D004543 ORTHO05D006042 1.6e-153 546.6 390 70.8
AL3G15410 Arabidopsis lyrata HOM05D004543 ORTHO05D006042 2.1e-153 546.2 386 71.8
A01p16150 Brassica napus HOM05D004543 ORTHO05D006042 3.6e-153 545.4 384 72.4
BraA01t01551Z Brassica rapa HOM05D004543 ORTHO05D006042 3.6e-153 545.4 384 72.4
BcaNung06004 Brassica carinata HOM05D004543 ORTHO05D006042 4.7e-153 545.0 388 72.7
C07p53840 Brassica napus HOM05D004543 ORTHO05D006042 6.2e-153 544.7 388 72.7
MELO3C025044.2 Cucumis melo HOM05D004543 ORTHO05D006042 6.2e-153 544.7 382 73.6
BcaC06g32853 Brassica carinata HOM05D004543 ORTHO05D006042 1.1e-152 543.9 388 72.2
A03p55600 Brassica napus HOM05D004543 ORTHO05D006042 1.1e-152 543.9 384 72.9
BolC7t45874H Brassica oleracea HOM05D004543 ORTHO05D006042 1.1e-152 543.9 388 72.2
BraA03t14627Z Brassica rapa HOM05D004543 ORTHO05D006042 1.1e-152 543.9 384 72.9
SGA_v2.0_scaffold161G37784 Striga asiatica HOM05D004543 ORTHO05D006042 1.1e-152 543.9 391 70.8
Lj9C477T19 Lonicera japonica HOM05D004543 ORTHO05D006042 2.3e-152 542.7 405 70.6
Migut.I00508 Erythranthe guttata HOM05D004543 ORTHO05D006042 5.2e-152 541.6 391 71.9
Carub.0003s0428 Capsella rubella HOM05D004543 ORTHO05D006042 2.0e-151 539.7 390 70.5
THA.LOC104811593 Tarenaya hassleriana HOM05D004543 ORTHO05D006042 9.9e-151 537.3 381 71.7
Oeu056011.1 Olea europaea HOM05D004543 ORTHO05D006042 1.3e-150 537.0 391 69.3
PSO782G5417 Papaver somniferum HOM05D004543 ORTHO05D006042 1.2e-148 530.4 378 72.0
CDE05G1945 Ceratophyllum demersum HOM05D004543 ORTHO05D006042 4.6e-148 528.5 381 71.1
PSO063G5574 Papaver somniferum HOM05D004543 ORTHO05D006042 1.7e-147 526.6 378 71.4
Cc07_g18860 Coffea canephora HOM05D004543 ORTHO05D006042 6.6e-147 524.6 391 69.3
unitig_8.g3033 Utricularia gibba HOM05D004543 ORTHO05D006042 9.5e-146 520.8 389 68.4
ECA232G1394 Erigeron canadensis HOM05D004543 ORTHO05D006042 6.2e-145 518.1 385 67.8
ATR0561G088 Amborella trichopoda HOM05D004543 ORTHO05D006042 7.6e-143 511.1 386 67.6
FAN08G2446 Fragaria x ananassa HOM05D004543 ORTHO05D006042 7.6e-143 511.1 326 80.1
Sopen08g002610 Solanum pennellii HOM05D004543 ORTHO05D006042 1.7e-142 510.0 378 70.4
PGSC0003DMG400026304 Solanum tuberosum HOM05D004543 ORTHO05D006042 3.8e-142 508.8 378 70.1
Solyc08g006660.2 Solanum lycopersicum HOM05D004543 ORTHO05D006042 6.4e-142 508.1 378 70.1
Nitab4.5_0001187g0130 Nicotiana tabacum HOM05D004543 ORTHO05D006042 3.2e-141 505.8 390 69.0
Nitab4.5_0002497g0060 Nicotiana tabacum HOM05D004543 ORTHO05D006042 7.1e-141 504.6 390 69.0
Zm00001eb064480 Zea mays HOM05D004543 ORTHO05D006042 6.6e-139 498.0 385 65.7
Zm00001eb210790 Zea mays HOM05D004543 ORTHO05D006042 2.5e-138 496.1 373 66.2
Sp6g25960 Schrenkiella parvula HOM05D004543 ORTHO05D006042 7.3e-138 494.6 382 67.5
Migut.I00509 Erythranthe guttata HOM05D004543 ORTHO05D006042 8.1e-137 491.1 377 68.7
Os03g0849600 Oryza sativa ssp. japonica HOM05D004543 ORTHO05D006042 1.2e-135 487.3 390 64.1
CAN.G906.5 Capsicum annuum HOM05D004543 ORTHO05D006042 2.3e-131 473.0 393 64.6
SHI28598 Sapria himalayana HOM05D004543 ORTHO05D006042 4.3e-130 468.8 454 57.5
Peaxi162Scf00045g00192 Petunia axillaris HOM05D004543 ORTHO05D006042 2.0e-127 459.9 384 64.1
SEGI_19802 Sequoiadendron giganteum HOM05D004543 ORTHO05D006042 4.9e-126 455.3 381 63.5
A03p08790 Brassica napus HOM05D004543 ORTHO05D006042 1.6e-124 450.3 384 62.5
C03p10280 Brassica napus HOM05D004543 ORTHO05D006042 1.0e-123 447.6 379 64.4
BraA03t10204Z Brassica rapa HOM05D004543 ORTHO05D006042 1.0e-123 447.6 379 64.4
BolC3t13508H Brassica oleracea HOM05D004543 ORTHO05D006042 1.5e-122 443.7 384 62.5
BcaNung04937 Brassica carinata HOM05D004543 ORTHO05D006042 1.4e-120 437.2 384 62.2
Mapoly0003s0046 Marchantia polymorpha HOM05D004543 ORTHO05D006042 8.4e-118 427.9 395 58.5
AUR62025843 Chenopodium quinoa HOM05D004543 ORTHO05D006042 1.6e-116 423.7 291 75.3
AagrBONN_evm.TU.Sc2ySwM_344.2190 Anthoceros agrestis HOM05D004543 ORTHO05D006042 3.5e-116 422.5 379 57.8
BcaB01g05188 Brassica carinata HOM05D004543 ORTHO05D006042 6.2e-113 411.8 357 62.5
SMO347G0349 Selaginella moellendorffii HOM05D004543 ORTHO05D006042 4.2e-109 399.1 374 56.7
CBR_g49627 Chara braunii HOM05D004543 ORTHO05D006042 2.1e-108 396.7 391 53.7
Pp3c14_17740 Physcomitrium patens HOM05D004543 ORTHO05D006042 3.5e-108 396.0 388 55.7
Pp3c17_20170 Physcomitrium patens HOM05D004543 ORTHO05D006042 1.3e-107 394.0 392 55.1
HPP92_007000 Vanilla planifolia HOM05D004543 ORTHO05D006042 3.3e-90 336.3 383 50.7
DCAR_026221 Daucus carota HOM05D004543 ORTHO05D006042 3.1e-80 303.1 236 68.2
Dinv04875 Davidia involucrata HOM05D004543 ORTHO05D006042 4.1e-72 276.2 160 85.6
Sc04g0000730 Simmondsia chinensis HOM05D004543 ORTHO05D006042 7.0e-72 275.4 168 79.8
Sc04g0000720 Simmondsia chinensis HOM05D004543 ORTHO05D006042 3.5e-71 273.1 222 65.3
Rhsim08G0188800 Rhododendron simsii HOM05D004543 ORTHO05D006042 7.5e-66 255.4 160 77.5
CARHR232260 Cardamine hirsuta HOM05D004543 ORTHO05D006042 1.7e-65 254.2 168 74.4
PRCOL_00002621 Prasinoderma coloniale HOM05D004543 ORTHO05D006042 2.4e-56 223.8 360 36.7
Hma1.2p1_0140F.1_g063430 Hydrangea macrophylla HOM05D004543 ORTHO05D006042 1.1e-48 198.4 220 51.8
Medtr3g105000 Medicago truncatula HOM05D004543 ORTHO05D006042 7.0e-48 195.7 157 64.3
Cre09.g402750 Chlamydomonas reinhardtii HOM05D004543 ORTHO05D006042 2.0e-47 194.1 393 35.9
HPP92_006979 Vanilla planifolia HOM05D004543 ORTHO05D006042 5.4e-40 169.5 132 68.2
Lsat_1_v5_gn_5_92440 Lactuca sativa HOM05D004543 ORTHO05D006042 7.8e-39 165.6 151 58.3
Medtr3g105005 Medicago truncatula HOM05D004543 ORTHO05D006042 1.3e-38 164.9 193 50.8
MCO07G105 Micromonas commoda HOM05D004543 ORTHO05D006042 4.4e-34 149.8 377 29.4
Rhsim02G0055400 Rhododendron simsii HOM05D004543 ORTHO05D006042 7.8e-31 139.0 91 73.6
Manes.14G052501 Manihot esculenta HOM05D004543 ORTHO05D006042 1.2e-26 125.2 234 41.5
Rhsim05G0168000 Rhododendron simsii HOM05D003391 ORTHO05D005563 3.4e-26 123.6 141 49.6
Rhsim04G0209800 Rhododendron simsii HOM05D004543 ORTHO05D006042 2.4e-24 117.5 80 70.0
SMO117G0159 Selaginella moellendorffii HOM05D004543 ORTHO05D006042 2.0e-18 97.8 98 50.0
Hma1.2p1_0140F.1_g063440 Hydrangea macrophylla HOM05D004543 ORTHO05D006042 1.7e-17 94.7 75 65.3
SMO301G0055 Selaginella moellendorffii HOM05D004543 ORTHO05D000231 1.4e-16 91.7 296 26.0
TPR.G19226 Trifolium pratense HOM05D004543 ORTHO05D006042 9.3e-16 89.0 56 82.1
Medtr7g104380 Medicago truncatula HOM05D004543 ORTHO05D006042 1.0e-14 85.5 51 82.4
FAN06G0151 Fragaria x ananassa HOM05D004543 ORTHO05D022695 3.6e-12 77.0 125 40.8
FAN06G1316 Fragaria x ananassa HOM05D004543 ORTHO05D022695 6.2e-12 76.3 73 56.2
SMO250G0003 Selaginella moellendorffii HOM05D004543 ORTHO05D006042 1.4e-11 75.1 66 57.6
FvH4_7g19080 Fragaria vesca HOM05D000254 ORTHO05D022695 4.0e-11 73.6 73 54.8
FAN08G3116 Fragaria x ananassa HOM05D003545 ORTHO05D004720 1.7e-09 68.2 120 39.2
FAN18G2207 Fragaria x ananassa HOM05D003545 ORTHO05D004720 1.3e-06 58.5 115 36.5
FAN21G4007 Fragaria x ananassa HOM05D042832 ORTHO05D022695 1.8e-06 58.2 56 57.1


User provided reference genes

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