Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Sabra12G0067700 Salix brachista HOM05D004889 ORTHO05D005478 1.2e-236 823.2 520 100.0
Potri.012G093000 Populus trichocarpa HOM05D004889 ORTHO05D005478 1.8e-205 719.5 523 88.0
Potri.015G090200 Populus trichocarpa HOM05D004889 ORTHO05D005478 3.4e-188 662.1 523 82.2
Sabra15G0112400 Salix brachista HOM05D004889 ORTHO05D005478 2.1e-177 626.3 518 81.7
Manes.14G073400 Manihot esculenta HOM05D004889 ORTHO05D005478 1.4e-141 507.3 537 66.5
Manes.06G097700 Manihot esculenta HOM05D004889 ORTHO05D005478 1.7e-139 500.4 538 65.4
CsaV3_1G008010 Cucumis sativus L. HOM05D004889 ORTHO05D005478 3.8e-139 499.2 534 63.3
MELO3C002218.2 Cucumis melo HOM05D004889 ORTHO05D005478 1.1e-135 487.6 534 63.5
Nn4g22998 Nelumbo nucifera HOM05D004889 ORTHO05D005478 1.3e-134 484.2 534 66.3
Dinv38643 Davidia involucrata HOM05D004889 ORTHO05D005478 4.8e-134 482.3 535 62.6
FAN08G0221 Fragaria x ananassa HOM05D002295 ORTHO05D002789 6.5e-131 471.9 524 63.2
FAN13G0367 Fragaria x ananassa HOM05D004889 ORTHO05D005478 4.2e-130 469.2 525 67.4
Ca_21861_v3 Cicer arietinum L. HOM05D004889 ORTHO05D005478 1.4e-128 464.2 528 64.8
TAR629G1437 Trochodendron aralioides HOM05D004889 ORTHO05D005478 2.3e-128 463.4 536 63.6
TAR640G0002 Trochodendron aralioides HOM05D004889 ORTHO05D005478 6.8e-128 461.8 535 64.5
TAR039G0004 Trochodendron aralioides HOM05D004889 ORTHO05D005478 1.2e-127 461.1 536 63.4
GSVIVG01008085001 Vitis vinifera HOM05D004889 ORTHO05D005478 1.5e-127 460.7 538 63.0
ClCG01G014310 Citrullus lanatus HOM05D004889 ORTHO05D005478 3.4e-127 459.5 550 60.5
RcHm_v2.0_Chr7g0180311 Rosa chinensis HOM05D004889 ORTHO05D005478 3.4e-127 459.5 528 65.5
FvH4_5g15820 Fragaria vesca HOM05D004889 ORTHO05D005478 4.4e-127 459.1 524 62.2
CiPaw.11G036000 Carya illinoinensis HOM05D004889 ORTHO05D005478 5.7e-127 458.8 543 62.1
PGSC0003DMG400033066 Solanum tuberosum HOM05D004889 ORTHO05D005478 1.3e-126 457.6 529 60.7
Ciclev10019625m.g Citrus clementina HOM05D004889 ORTHO05D005478 2.8e-126 456.4 537 63.3
CSS0046467 Camellia sinensis var. sinensis HOM05D004889 ORTHO05D005478 1.4e-125 454.1 545 63.5
CANSAT80G0562 Cannabis sativa HOM05D004889 ORTHO05D005478 1.8e-125 453.8 534 62.2
TWI60G0433 Tripterygium wilfordii HOM05D004889 ORTHO05D005478 2.4e-125 453.4 534 60.3
Rhsim12G0159900 Rhododendron simsii HOM05D004889 ORTHO05D005478 1.6e-124 450.7 540 62.0
FAN18G0072 Fragaria x ananassa HOM05D002295 ORTHO05D002789 6.5e-123 445.3 547 59.4
MD06G1185300 Malus domestica HOM05D004889 ORTHO05D005478 5.5e-122 442.2 536 64.9
Duzib084G1322 Durio zibethinus HOM05D004889 ORTHO05D005478 7.2e-122 441.8 534 62.7
Duzib068G1437 Durio zibethinus HOM05D004889 ORTHO05D005478 1.6e-121 440.7 537 59.2
Thecc.03G076300 Theobroma cacao HOM05D004889 ORTHO05D005478 2.1e-121 440.3 536 62.9
CAN.G628.53 Capsicum annuum HOM05D004889 ORTHO05D005478 2.3e-120 436.8 535 59.6
MD14G1191200 Malus domestica HOM05D004889 ORTHO05D005478 4.0e-120 436.0 540 61.1
Phvul.003G194500 Phaseolus vulgaris HOM05D004889 ORTHO05D005478 8.8e-120 434.9 537 62.0
Psat4g054400 Pisum sativum HOM05D004889 ORTHO05D005478 2.0e-119 433.7 539 62.7
Sed0007285 Sechium edule HOM05D004889 ORTHO05D005478 3.4e-119 433.0 533 59.5
Gohir.A07G065700 Gossypium hirsutum HOM05D004889 ORTHO05D005478 7.5e-119 431.8 531 59.7
Glyma.05G031100 Glycine max HOM05D004889 ORTHO05D005478 2.2e-118 430.3 551 59.3
Lj5A118T73 Lonicera japonica HOM05D004889 ORTHO05D005478 2.8e-118 429.9 539 58.6
Haze_07757 Corylus avellana HOM05D004889 ORTHO05D005478 4.9e-118 429.1 537 60.5
Prupe.5G184200 Prunus persica HOM05D004889 ORTHO05D005478 6.3e-118 428.7 532 61.3
vmacro16573 Vaccinium macrocarpon HOM05D004889 ORTHO05D005478 1.1e-117 427.9 578 58.1
MSTRG.23064 Avicennia marina HOM05D004889 ORTHO05D005478 1.8e-117 427.2 534 62.2
Hma1.2p1_3047F.1_g332110 Hydrangea macrophylla HOM05D004889 ORTHO05D005478 4.1e-117 426.0 539 60.7
Duzib205G1395 Durio zibethinus HOM05D004889 ORTHO05D005478 1.2e-116 424.5 539 60.9
Sed0005054 Sechium edule HOM05D004889 ORTHO05D005478 1.0e-115 421.4 532 59.6
Gorai.001G074100 Gossypium raimondii HOM05D004889 ORTHO05D005478 2.3e-115 420.2 539 59.0
Cpa.g.sc17.179 Carica papaya HOM05D004889 ORTHO05D005478 3.8e-115 419.5 518 62.0
QL03p038490 Quercus lobata HOM05D004889 ORTHO05D005478 3.8e-115 419.5 559 60.1
Dinv19901 Davidia involucrata HOM05D004889 ORTHO05D005478 5.0e-115 419.1 536 61.2
Migut.I00111 Erythranthe guttata HOM05D004889 ORTHO05D005478 8.6e-115 418.3 535 59.6
Gohir.D07G070200 Gossypium hirsutum HOM05D004889 ORTHO05D005478 8.6e-115 418.3 539 58.8
AUR62027699 Chenopodium quinoa HOM05D004889 ORTHO05D005478 4.3e-114 416.0 533 58.0
SalBow5G2608 Salvia bowleyana HOM05D004889 ORTHO05D005478 1.2e-113 414.5 552 58.9
Medtr4g107410 Medicago truncatula HOM05D004889 ORTHO05D005478 2.1e-113 413.7 541 62.5
Lalb_Chr13g0298111 Lupinus albus HOM05D004889 ORTHO05D005478 3.6e-113 412.9 524 62.6
VMungo1215G2590 Vigna mungo HOM05D004889 ORTHO05D005478 3.6e-113 412.9 535 59.1
AUR62031228 Chenopodium quinoa HOM05D004889 ORTHO05D005478 1.0e-112 411.4 575 57.0
Sopen06g027440 Solanum pennellii HOM05D004889 ORTHO05D005478 4.0e-112 409.5 529 58.8
Solyc06g071140.3 Solanum lycopersicum HOM05D004889 ORTHO05D005478 5.2e-112 409.1 529 58.2
TAR622G0909 Trochodendron aralioides HOM05D004889 ORTHO05D005478 1.5e-111 407.5 536 61.0
Actinidia04935 Actinidia chinensis HOM05D004889 ORTHO05D005478 4.1e-109 399.4 535 59.6
Aqoxy3G00822 Aquilegia oxysepala HOM05D004889 ORTHO05D005478 1.6e-108 397.5 537 57.7
Eucgr.B00394 Eucalyptus grandis HOM05D004889 ORTHO05D005478 2.7e-108 396.7 544 59.6
PSO161G0045 Papaver somniferum HOM05D004889 ORTHO05D005478 5.9e-108 395.6 541 59.9
Hund21165 Selenicereus undatus HOM05D004889 ORTHO05D005478 5.9e-108 395.6 543 58.0
MBI04_g18038_MAGBIO Magnolia biondii HOM05D004889 ORTHO05D005478 1.7e-107 394.0 544 59.6
Hma1.2p1_3047F.1_g332100 Hydrangea macrophylla HOM05D004889 ORTHO05D005478 5.0e-107 392.5 529 58.0
PGR083G1434 Punica granatum HOM05D004889 ORTHO05D005478 2.5e-106 390.2 541 60.6
TWI81G0893 Tripterygium wilfordii HOM05D004889 ORTHO05D005478 2.5e-106 390.2 536 60.6
Peaxi162Scf00496g00012 Petunia axillaris HOM05D004889 ORTHO05D005478 1.2e-105 387.9 535 60.2
Lj4g0007492 Lotus japonicus HOM05D004889 ORTHO05D005478 1.6e-105 387.5 542 61.4
arahy.Tifrunner.gnm1.ann1.78U3A7 Arachis hypogaea HOM05D004889 ORTHO05D005478 6.2e-105 385.6 541 58.6
COL.COLO4_33419 Corchorus olitorius HOM05D004889 ORTHO05D005478 8.0e-105 385.2 537 59.2
EL10Ac8g20579 Beta vulgaris HOM05D004889 ORTHO05D005478 4.0e-104 382.9 540 57.8
ATR0712G167 Amborella trichopoda HOM05D004889 ORTHO05D005478 2.2e-102 377.1 536 56.3
arahy.Tifrunner.gnm1.ann1.9HIF7S Arachis hypogaea HOM05D004889 ORTHO05D005478 2.9e-102 376.7 540 59.6
Lalb_Chr07g0182371 Lupinus albus HOM05D004889 ORTHO05D005478 6.0e-100 369.0 525 58.1
PSO478G3716 Papaver somniferum HOM05D004889 ORTHO05D005478 1.2e-97 361.3 541 58.0
SGA_v2.0_scaffold56G20073 Striga asiatica HOM05D004889 ORTHO05D005478 1.2e-95 354.8 547 55.8
Nitab4.5_0000026g0250 Nicotiana tabacum HOM05D004889 ORTHO05D005478 4.4e-95 352.8 551 56.1
THA.LOC104818246 Tarenaya hassleriana HOM05D004889 ORTHO05D005478 7.5e-95 352.1 549 55.0
HPP92_012530 Vanilla planifolia HOM05D004889 ORTHO05D005478 2.2e-94 350.5 549 51.7
Nitab4.5_0003595g0020 Nicotiana tabacum HOM05D004889 ORTHO05D005478 3.2e-93 346.7 550 55.1
Atru.chr9.2345 Acer truncatum HOM05D004889 ORTHO05D005478 4.6e-92 342.8 461 58.4
Ah.09g233410 Amaranthus hybridus HOM05D004889 ORTHO05D005478 9.5e-90 335.1 483 59.0
TPR.G38450 Trifolium pratense HOM05D004889 ORTHO05D005478 1.4e-88 331.3 534 54.7
DCAR_016527 Daucus carota HOM05D004889 ORTHO05D005478 1.8e-88 330.9 547 53.4
ECA232G4768 Erigeron canadensis HOM05D000153 ORTHO05D000118 1.7e-86 324.3 534 53.7
Aa31LG4G16530 Aethionema arabicum HOM05D004889 ORTHO05D005478 6.4e-86 322.4 584 50.5
Cc04_g15980 Coffea canephora HOM05D004889 ORTHO05D005478 6.4e-86 322.4 535 55.5
CDE01G0549 Ceratophyllum demersum HOM05D004889 ORTHO05D005478 1.4e-85 321.2 568 52.3
Carub.0008s2340 Capsella rubella HOM05D004889 ORTHO05D005478 1.9e-85 320.9 555 50.1
Medtr4g107420 Medicago truncatula HOM05D004889 ORTHO05D005478 5.4e-85 319.3 528 53.2
Sc12g0006090 Simmondsia chinensis HOM05D004889 ORTHO05D005478 1.0e-83 315.1 457 54.7
BcaC01g02501 Brassica carinata HOM05D004889 ORTHO05D005478 2.3e-83 313.9 549 50.8
SEGI_11308 Sequoiadendron giganteum HOM05D004889 ORTHO05D005478 5.2e-80 302.8 545 52.1
CARHR276450 Cardamine hirsuta HOM05D004889 ORTHO05D005478 6.8e-80 302.4 534 50.6
AL8G39620 Arabidopsis lyrata HOM05D004889 ORTHO05D005478 9.9e-79 298.5 542 50.9
A06p29350 Brassica napus HOM05D004889 ORTHO05D005478 2.9e-78 297.0 548 49.6
BolC3t18668H Brassica oleracea HOM05D004889 ORTHO05D005478 1.9e-77 294.3 577 49.0
C03p64130 Brassica napus HOM05D004889 ORTHO05D005478 9.3e-77 292.0 546 50.4
Sp2g25820 Schrenkiella parvula HOM05D004889 ORTHO05D005478 6.0e-76 289.3 546 49.6
BcaB02g09666 Brassica carinata HOM05D004889 ORTHO05D005478 1.1e-74 285.0 548 48.7
HanXRQChr09g0271391 Helianthus annuus HOM05D004889 ORTHO05D005478 1.5e-74 284.6 523 53.2
Lsat_1_v5_gn_4_105560 Lactuca sativa HOM05D004889 ORTHO05D005478 3.3e-74 283.5 539 46.6
AT5G62640 Arabidopsis thaliana HOM05D004889 ORTHO05D005478 3.6e-73 280.0 533 50.3
BraA06t25888Z Brassica rapa HOM05D004889 ORTHO05D005478 4.8e-73 279.6 562 47.5
HPP92_012535 Vanilla planifolia HOM05D004889 ORTHO05D005478 6.9e-72 275.8 540 43.7
Nn3g17093 Nelumbo nucifera HOM05D004889 ORTHO05D005478 1.7e-70 271.2 201 73.6
CARHR156590 Cardamine hirsuta HOM05D004889 ORTHO05D005478 8.4e-70 268.9 498 52.6
Hma1.2p1_0104F.1_g050430 Hydrangea macrophylla HOM05D004889 ORTHO05D005478 1.9e-69 267.7 492 52.4
unitig_0.g784 Utricularia gibba HOM05D004889 ORTHO05D005478 2.7e-68 263.8 202 72.3
CDE12G0348 Ceratophyllum demersum HOM05D004889 ORTHO05D005478 9.6e-66 255.4 442 51.4
Nitab4.5_0003744g0020 Nicotiana tabacum HOM05D004889 ORTHO05D005478 4.8e-65 253.1 185 75.7
Os07g0192900 Oryza sativa ssp. japonica HOM05D004889 ORTHO05D005478 6.2e-65 252.7 195 72.3
Oeu022615.1 Olea europaea HOM05D004889 ORTHO05D005478 4.5e-63 246.5 145 86.2
Pp3c4_160 Physcomitrium patens HOM05D004889 ORTHO05D005478 1.1e-61 241.9 580 44.1
Mapoly0075s0020 Marchantia polymorpha HOM05D004889 ORTHO05D005478 4.8e-57 226.5 577 44.4
CBR_g4762 Chara braunii HOM05D004889 ORTHO05D005478 6.0e-52 209.5 181 65.2
Actinidia37670 Actinidia chinensis HOM05D004889 ORTHO05D005478 8.7e-51 205.7 321 52.6
BcaB02g09670 Brassica carinata HOM05D004889 ORTHO05D005478 1.4e-48 198.4 156 70.5
Thhalv10003972m.g Eutrema salsugineum HOM05D004889 ORTHO05D005478 6.9e-48 196.1 443 45.4
Medtr0444s0010 Medicago truncatula HOM05D004889 ORTHO05D005478 1.9e-42 177.9 380 47.9
Glyma.17G095700 Glycine max HOM05D004889 ORTHO05D005478 2.8e-41 174.1 269 52.4
SMO351G0326 Selaginella moellendorffii HOM05D004889 ORTHO05D005478 6.9e-40 169.5 521 36.1
Oeu022609.1 Olea europaea HOM05D004889 ORTHO05D005478 5.7e-34 149.8 278 47.5
Actinidia37671 Actinidia chinensis HOM05D004889 ORTHO05D005478 1.7e-33 148.3 126 69.0
AagrBONN_evm.TU.Sc2ySwM_228.3309 Anthoceros agrestis HOM05D004889 ORTHO05D005478 1.1e-32 145.6 510 44.9
HanXRQChr12g0361591 Helianthus annuus HOM05D004889 ORTHO05D005478 5.5e-29 133.3 109 69.7
unitig_0.g785 Utricularia gibba HOM05D004889 ORTHO05D005478 1.8e-27 128.3 133 63.9
Gohir.A11G028540 Gossypium hirsutum HOM05D004889 ORTHO05D005478 3.9e-27 127.1 74 83.8
Zm00001eb116440 Zea mays HOM05D004889 ORTHO05D005478 6.7e-27 126.3 111 64.9
Zm00001eb302650 Zea mays HOM05D004889 ORTHO05D005478 3.1e-24 117.5 78 73.1
Nitab4.5_0000003g0080 Nicotiana tabacum HOM05D004889 ORTHO05D005478 2.0e-23 114.8 144 50.7
BcaB02g09669 Brassica carinata HOM05D004889 ORTHO05D005478 7.7e-23 112.8 107 62.6
Nitab4.5_0003744g0040 Nicotiana tabacum HOM05D004889 ORTHO05D005478 1.0e-22 112.5 114 59.6
Cre07.g348700 Chlamydomonas reinhardtii HOM05D004889 ORTHO05D005478 2.4e-16 91.3 172 38.4
CiPaw.12G005400 Carya illinoinensis HOM05D004889 ORTHO05D005478 9.1e-16 89.4 73 65.8
CiPaw.12G005600 Carya illinoinensis HOM05D004889 ORTHO05D005478 9.1e-16 89.4 73 65.8
SEGI_30438 Sequoiadendron giganteum HOM05D004889 ORTHO05D005478 6.5e-14 83.2 104 55.8
Hma1.2p1_0104F.1_g050420 Hydrangea macrophylla HOM05D004889 ORTHO05D005478 1.5e-13 82.0 55 78.2
arahy.Tifrunner.gnm1.ann1.KJ948Q Arachis hypogaea HOM05D004889 ORTHO05D005478 2.1e-12 78.2 94 55.3
SEGI_10816 Sequoiadendron giganteum HOM05D004889 ORTHO05D005478 1.8e-11 75.1 46 80.4
Migut.D01883 Erythranthe guttata HOM05D000593 ORTHO05D000562 3.0e-11 74.3 86 52.3
arahy.Tifrunner.gnm1.ann1.GYQ60G Arachis hypogaea HOM05D004889 ORTHO05D005478 2.2e-09 68.2 49 81.6
Nitab4.5_0000003g0090 Nicotiana tabacum HOM05D004889 ORTHO05D005478 2.8e-09 67.8 114 49.1
Oeu005056.1 Olea europaea HOM05D004889 ORTHO05D005478 4.1e-08 63.9 74 55.4


User provided reference genes

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