Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Sabra12G0061400 Salix brachista HOM05D003422 ORTHO05D004263 3.3e-160 568.5 330 100.0
Potri.012G085300 Populus trichocarpa HOM05D003422 ORTHO05D004263 3.0e-129 465.7 333 82.9
Potri.015G083700 Populus trichocarpa HOM05D003422 ORTHO05D004263 3.6e-119 432.2 333 76.6
Sabra15G0107000 Salix brachista HOM05D003422 ORTHO05D004263 4.4e-117 425.2 337 74.8
TWI39G0719 Tripterygium wilfordii HOM05D003422 ORTHO05D004263 4.6e-98 362.1 328 64.6
TAR622G0502 Trochodendron aralioides HOM05D003422 ORTHO05D004263 1.3e-97 360.5 328 61.3
TWI23G0208 Tripterygium wilfordii HOM05D003422 ORTHO05D004263 9.6e-96 354.4 332 63.3
GSVIVG01007655001 Vitis vinifera HOM05D003422 ORTHO05D004263 9.6e-96 354.4 329 61.7
Nn8g39875 Nelumbo nucifera HOM05D003422 ORTHO05D004263 1.3e-95 354.0 327 61.8
GSVIVG01021879001 Vitis vinifera HOM05D003422 ORTHO05D004263 2.8e-95 352.8 328 61.0
Haze_08919 Corylus avellana HOM05D003422 ORTHO05D004263 6.9e-94 348.2 328 66.2
Cfa012129 Carpinus fangiana HOM05D003422 ORTHO05D004263 1.2e-93 347.4 328 66.2
CiPaw.05G181800 Carya illinoinensis HOM05D003422 ORTHO05D004263 3.4e-93 345.9 333 61.9
Dinv15231 Davidia involucrata HOM05D003422 ORTHO05D004263 1.7e-92 343.6 341 58.1
Haze_12250 Corylus avellana HOM05D003422 ORTHO05D004263 5.0e-92 342.0 333 65.2
Hma1.2p1_3343F.1_g335440 Hydrangea macrophylla HOM05D003422 ORTHO05D004263 8.4e-92 341.3 333 58.0
QL03p061510 Quercus lobata HOM05D003422 ORTHO05D004263 8.4e-92 341.3 332 61.1
Sed0026406 Sechium edule HOM05D003422 ORTHO05D004263 1.1e-91 340.9 332 59.0
CiPaw.05G159400 Carya illinoinensis HOM05D003422 ORTHO05D004263 1.4e-91 340.5 333 61.6
Ciclev10032237m.g Citrus clementina HOM05D003422 ORTHO05D004263 2.5e-91 339.7 334 58.7
Cfa009213 Carpinus fangiana HOM05D003422 ORTHO05D004263 4.2e-91 339.0 333 64.0
CSS0036067 Camellia sinensis var. sinensis HOM05D003422 ORTHO05D004263 5.5e-91 338.6 331 56.5
Nn8g40815 Nelumbo nucifera HOM05D003422 ORTHO05D004263 7.1e-91 338.2 302 66.6
TAR374G1409 Trochodendron aralioides HOM05D003422 ORTHO05D004263 7.1e-91 338.2 335 58.8
QL03p058012 Quercus lobata HOM05D003422 ORTHO05D004263 1.8e-89 333.6 333 59.8
Prupe.1G244800 Prunus persica HOM05D003422 ORTHO05D004263 2.5e-88 329.7 333 57.7
Oeu041425.1 Olea europaea HOM05D003422 ORTHO05D004263 1.3e-87 327.4 334 59.0
Atru.chr2.1587 Acer truncatum HOM05D003422 ORTHO05D004263 1.6e-87 327.0 336 55.4
Atru.chr3.1581 Acer truncatum HOM05D003422 ORTHO05D004263 1.6e-87 327.0 302 60.3
Sed0010066 Sechium edule HOM05D003422 ORTHO05D004263 1.6e-87 327.0 297 60.9
Sc14g0008740 Simmondsia chinensis HOM05D003422 ORTHO05D004263 3.7e-87 325.9 297 61.6
CANSAT64G0467 Cannabis sativa HOM05D003422 ORTHO05D004263 4.8e-87 325.5 303 61.7
Sopen01g001810 Solanum pennellii HOM05D003422 ORTHO05D004263 1.8e-86 323.6 268 63.8
MD03G1198200 Malus domestica HOM05D003422 ORTHO05D004263 2.4e-86 323.2 330 55.2
Phvul.011G000100 Phaseolus vulgaris HOM05D003422 ORTHO05D004263 2.4e-86 323.2 333 58.6
Solyc01g005810.3 Solanum lycopersicum HOM05D003422 ORTHO05D004263 2.4e-86 323.2 278 62.2
Manes.13G024200 Manihot esculenta HOM05D003422 ORTHO05D004263 4.1e-86 322.4 332 56.0
Nitab4.5_0016963g0010 Nicotiana tabacum HOM05D003422 ORTHO05D004263 6.9e-86 321.6 347 54.5
Phvul.010G035100 Phaseolus vulgaris HOM05D003422 ORTHO05D004263 6.9e-86 321.6 333 58.9
PGSC0003DMG400032131 Solanum tuberosum HOM05D003422 ORTHO05D004263 6.9e-86 321.6 268 64.6
Peaxi162Scf00128g00219 Petunia axillaris HOM05D003422 ORTHO05D004263 9.0e-86 321.2 275 62.5
RcHm_v2.0_Chr4g0433011 Rosa chinensis HOM05D003422 ORTHO05D004263 2.0e-85 320.1 331 54.4
Nitab4.5_0001565g0060 Nicotiana tabacum HOM05D003422 ORTHO05D004263 3.4e-85 319.3 349 53.6
Nitab4.5_0009109g0040 Nicotiana tabacum HOM05D003422 ORTHO05D004263 3.4e-85 319.3 347 53.9
arahy.Tifrunner.gnm1.ann1.G4VR7T Arachis hypogaea HOM05D003422 ORTHO05D004263 4.5e-85 318.9 334 54.5
RcHm_v2.0_Chr7g0190541 Rosa chinensis HOM05D003422 ORTHO05D004263 1.0e-84 317.8 331 54.7
Cpa.g.sc33.23 Carica papaya HOM05D003422 ORTHO05D004263 2.2e-84 316.6 281 63.3
Nn2g13933 Nelumbo nucifera HOM05D003422 ORTHO05D004263 3.8e-84 315.8 255 69.8
MD11G1214400 Malus domestica HOM05D003422 ORTHO05D004263 6.5e-84 315.1 296 58.8
Glyma.06G286100 Glycine max HOM05D003422 ORTHO05D004263 1.1e-83 314.3 337 58.5
Eucgr.B00992 Eucalyptus grandis HOM05D003422 ORTHO05D004263 1.4e-83 313.9 333 59.2
Prupe.8G016700 Prunus persica HOM05D003422 ORTHO05D004263 1.9e-83 313.5 299 60.5
Psat7g167080 Pisum sativum HOM05D003422 ORTHO05D004263 4.2e-83 312.4 337 57.0
Hund06028 Selenicereus undatus HOM05D003422 ORTHO05D004263 1.2e-82 310.8 329 55.3
FAN07G0682 Fragaria x ananassa HOM05D003422 ORTHO05D004263 1.6e-82 310.5 327 57.5
Eucgr.K01009 Eucalyptus grandis HOM05D003422 ORTHO05D004263 3.6e-82 309.3 279 67.0
Glyma.12G119800 Glycine max HOM05D003422 ORTHO05D004263 3.6e-82 309.3 337 58.2
Duzib068G0444 Durio zibethinus HOM05D003422 ORTHO05D004263 6.1e-82 308.5 336 59.5
Rhsim12G0110100 Rhododendron simsii HOM05D003422 ORTHO05D004263 1.0e-81 307.8 318 55.7
arahy.Tifrunner.gnm1.ann1.I3QT17 Arachis hypogaea HOM05D003422 ORTHO05D004263 1.1e-80 304.3 337 52.8
Cc11_g15770 Coffea canephora HOM05D003422 ORTHO05D004263 1.1e-80 304.3 332 55.1
ClCG07G015410 Citrullus lanatus HOM05D003422 ORTHO05D004263 5.7e-80 302.0 295 59.0
MELO3C017744.2 Cucumis melo HOM05D003422 ORTHO05D004263 5.7e-80 302.0 334 53.6
Rhsim06G0078600 Rhododendron simsii HOM05D003422 ORTHO05D004263 7.4e-80 301.6 393 47.6
FAN17G2514 Fragaria x ananassa HOM05D003422 ORTHO05D004263 1.7e-79 300.4 331 58.0
FvH4_4g25580 Fragaria vesca HOM05D003422 ORTHO05D004263 3.7e-79 299.3 333 59.2
Lalb_Chr04g0254851 Lupinus albus HOM05D003422 ORTHO05D004263 4.8e-79 298.9 334 58.7
Gohir.A12G199400 Gossypium hirsutum HOM05D003422 ORTHO05D004263 6.3e-79 298.5 341 58.1
Rhsim02G0001300 Rhododendron simsii HOM05D003422 ORTHO05D004263 6.3e-79 298.5 246 62.2
COL.COLO4_05559 Corchorus olitorius HOM05D003422 ORTHO05D004263 8.2e-79 298.1 331 58.6
FAN22G1899 Fragaria x ananassa HOM05D003422 ORTHO05D004263 1.4e-78 297.4 330 55.5
HPP92_014432 Vanilla planifolia HOM05D003422 ORTHO05D004263 9.1e-78 294.7 264 61.7
Dinv38208 Davidia involucrata HOM05D003422 ORTHO05D004263 1.2e-77 294.3 237 66.2
TPR.G28314 Trifolium pratense HOM05D003422 ORTHO05D004263 1.5e-77 293.9 339 52.5
Thecc.03G025100 Theobroma cacao HOM05D003422 ORTHO05D004263 3.4e-77 292.7 337 58.5
CsaV3_4G003000 Cucumis sativus L. HOM05D003422 ORTHO05D004263 4.5e-77 292.4 333 55.9
Gohir.D12G202200 Gossypium hirsutum HOM05D003422 ORTHO05D004263 5.9e-77 292.0 337 57.6
Aqoxy5G03760 Aquilegia oxysepala HOM05D003422 ORTHO05D004263 7.7e-77 291.6 328 52.7
DCAR_026512 Daucus carota HOM05D003422 ORTHO05D004263 1.0e-76 291.2 267 57.7
CAN.G158.25 Capsicum annuum HOM05D003422 ORTHO05D004263 1.3e-76 290.8 299 55.5
Gorai.008G217200 Gossypium raimondii HOM05D003422 ORTHO05D004263 1.3e-76 290.8 335 57.3
Ca_20120_v3 Cicer arietinum L. HOM05D003422 ORTHO05D004263 2.9e-76 289.7 336 57.7
unitig_21.g20608 Utricularia gibba HOM05D003422 ORTHO05D004263 1.9e-75 287.0 248 68.5
Actinidia15098 Actinidia chinensis HOM05D003422 ORTHO05D004263 9.4e-75 284.6 334 51.5
Lalb_Chr10g0099861 Lupinus albus HOM05D003422 ORTHO05D004263 3.6e-74 282.7 334 55.7
vmacro17129 Vaccinium macrocarpon HOM05D003422 ORTHO05D004263 3.6e-74 282.7 336 54.2
Thhalv10008312m.g Eutrema salsugineum HOM05D003422 ORTHO05D004263 6.1e-74 282.0 276 56.5
Medtr2g103560 Medicago truncatula HOM05D003422 ORTHO05D004263 6.1e-74 282.0 366 53.3
THA.LOC104822989 Tarenaya hassleriana HOM05D003422 ORTHO05D004263 1.4e-73 280.8 235 65.1
Lsat_1_v5_gn_8_152261 Lactuca sativa HOM05D003422 ORTHO05D004263 2.3e-73 280.0 263 59.3
BcaC08g45809 Brassica carinata HOM05D003422 ORTHO05D004263 3.0e-73 279.6 235 61.7
A07p31020 Brassica napus HOM05D003422 ORTHO05D004263 3.0e-73 279.6 235 61.7
C06p36020 Brassica napus HOM05D003422 ORTHO05D004263 3.0e-73 279.6 235 61.7
BolC6t38723H Brassica oleracea HOM05D003422 ORTHO05D004263 3.0e-73 279.6 235 61.7
FAN06G1621 Fragaria x ananassa HOM05D003422 ORTHO05D004263 6.7e-73 278.5 280 55.4
Sp5g25830 Schrenkiella parvula HOM05D003422 ORTHO05D004263 6.7e-73 278.5 235 61.7
SEGI_07600 Sequoiadendron giganteum HOM05D003422 ORTHO05D004263 6.7e-73 278.5 340 48.2
BcaB03g15550 Brassica carinata HOM05D003422 ORTHO05D004263 8.8e-73 278.1 235 61.3
BcaB05g24600 Brassica carinata HOM05D003422 ORTHO05D004263 8.8e-73 278.1 235 61.3
Aa31LG7G7310 Aethionema arabicum HOM05D003422 ORTHO05D004263 1.1e-72 277.7 223 63.7
HanXRQChr06g0172831 Helianthus annuus HOM05D003422 ORTHO05D004263 2.6e-72 276.6 333 51.1
PGR102G0689 Punica granatum HOM05D003422 ORTHO05D004263 5.7e-72 275.4 234 61.1
AT1G23280 Arabidopsis thaliana HOM05D003422 ORTHO05D004263 7.4e-72 275.0 281 55.9
VMungo1127G0899 Vigna mungo HOM05D003422 ORTHO05D004263 1.3e-71 274.2 332 50.9
arahy.Tifrunner.gnm1.ann1.FFB06F Arachis hypogaea HOM05D003422 ORTHO05D004263 2.2e-71 273.5 314 51.9
TPR.G37166 Trifolium pratense HOM05D003422 ORTHO05D004263 2.2e-71 273.5 358 48.0
ECA233G3049 Erigeron canadensis HOM05D003422 ORTHO05D004263 2.8e-71 273.1 339 55.5
Carub.0001s2287 Capsella rubella HOM05D003422 ORTHO05D004263 3.7e-71 272.7 279 57.0
Atru.chr3.1559 Acer truncatum HOM05D003422 ORTHO05D004263 6.3e-71 271.9 316 52.5
BcaC03g15214 Brassica carinata HOM05D003422 ORTHO05D004263 6.3e-71 271.9 234 59.8
C02p28010 Brassica napus HOM05D003422 ORTHO05D004263 6.3e-71 271.9 234 59.8
BolC2t08844H Brassica oleracea HOM05D003422 ORTHO05D004263 6.3e-71 271.9 234 59.8
BraA02t06729Z Brassica rapa HOM05D003422 ORTHO05D004263 6.3e-71 271.9 235 59.6
CARHR023720 Cardamine hirsuta HOM05D003422 ORTHO05D004263 1.8e-70 270.4 224 61.2
Lj1g0018398 Lotus japonicus HOM05D003422 ORTHO05D004263 7.0e-70 268.5 332 54.8
A02p16750 Brassica napus HOM05D003422 ORTHO05D004263 9.1e-70 268.1 235 60.0
EL10Ac6g13812 Beta vulgaris HOM05D003422 ORTHO05D004263 2.6e-69 266.5 330 46.7
PSO017G4826 Papaver somniferum HOM05D003422 ORTHO05D004263 4.5e-69 265.8 270 54.4
PSO478G1628 Papaver somniferum HOM05D003422 ORTHO05D004263 1.3e-68 264.2 272 53.3
Eucgr.K00985 Eucalyptus grandis HOM05D003422 ORTHO05D004263 1.7e-68 263.8 224 67.0
AL1G31870 Arabidopsis lyrata HOM05D003422 ORTHO05D004263 2.2e-68 263.5 281 52.7
Lsat_1_v5_gn_5_166341 Lactuca sativa HOM05D003422 ORTHO05D004263 8.5e-68 261.5 266 55.6
PSO017G5618 Papaver somniferum HOM05D003422 ORTHO05D004263 8.5e-68 261.5 331 47.7
CDE02G2608 Ceratophyllum demersum HOM05D003422 ORTHO05D004263 2.5e-67 260.0 278 58.6
Migut.E00204 Erythranthe guttata HOM05D003422 ORTHO05D004263 5.5e-67 258.8 275 55.6
BcaC01g03409 Brassica carinata HOM05D003422 ORTHO05D004263 2.7e-66 256.5 288 53.5
C03p52870 Brassica napus HOM05D003422 ORTHO05D004263 2.7e-66 256.5 288 53.5
BolC3t17554H Brassica oleracea HOM05D003422 ORTHO05D004263 2.7e-66 256.5 289 53.3
Zm00001eb364260 Zea mays HOM05D003422 ORTHO05D004263 2.7e-66 256.5 296 50.7
BraA03t13450Z Brassica rapa HOM05D003422 ORTHO05D004263 4.7e-66 255.8 285 53.7
AL1G37060 Arabidopsis lyrata HOM05D003422 ORTHO05D004263 1.4e-65 254.2 282 52.8
ATR0824G091 Amborella trichopoda HOM05D003422 ORTHO05D004263 2.3e-65 253.4 332 47.0
SGA_v2.0_scaffold63G21735 Striga asiatica HOM05D003637 ORTHO05D004175 5.2e-65 252.3 252 67.1
CDE05G1364 Ceratophyllum demersum HOM05D003422 ORTHO05D004263 2.0e-64 250.4 289 48.4
SMO331G0073 Selaginella moellendorffii HOM05D003422 ORTHO05D004263 2.0e-64 250.4 298 49.0
AUR62003555 Chenopodium quinoa HOM05D003422 ORTHO05D004263 2.6e-64 250.0 336 45.2
Os07g0270900 Oryza sativa ssp. japonica HOM05D003422 ORTHO05D004263 3.3e-64 249.6 232 56.0
AUR62017869 Chenopodium quinoa HOM05D003422 ORTHO05D004263 7.4e-64 248.4 336 45.2
Medtr4g079190 Medicago truncatula HOM05D003422 ORTHO05D004263 7.4e-64 248.4 341 49.3
A03p43080 Brassica napus HOM05D003422 ORTHO05D004263 2.8e-63 246.5 323 46.1
Mapoly0061s0104 Marchantia polymorpha HOM05D003422 ORTHO05D004263 2.8e-63 246.5 288 49.0
BraA01t03342Z Brassica rapa HOM05D003422 ORTHO05D004263 1.4e-62 244.2 285 51.2
Nitab4.5_0000979g0040 Nicotiana tabacum HOM05D003422 ORTHO05D004263 9.1e-62 241.5 154 78.6
A01p32170 Brassica napus HOM05D003422 ORTHO05D004263 1.6e-61 240.7 287 52.3
SpUn0343_0020 Schrenkiella parvula HOM05D003422 ORTHO05D004263 1.7e-60 237.3 256 53.5
Pp3c2_4220 Physcomitrium patens HOM05D003422 ORTHO05D004263 3.8e-60 236.1 249 50.6
BcaC09g49229 Brassica carinata HOM05D003422 ORTHO05D004263 5.0e-60 235.7 293 48.8
SEGI_01875 Sequoiadendron giganteum HOM05D003422 ORTHO05D004263 7.2e-59 231.9 133 81.2
Actinidia27808 Actinidia chinensis HOM05D003422 ORTHO05D004263 1.8e-57 227.3 297 48.8
CBR_g32274 Chara braunii HOM05D003422 ORTHO05D004263 4.0e-57 226.1 274 52.6
vmacro16194 Vaccinium macrocarpon HOM05D003422 ORTHO05D004263 1.6e-53 214.2 237 50.2
ATR0996G003 Amborella trichopoda HOM05D003422 ORTHO05D004263 4.7e-50 202.6 281 44.5
Prupe.8G011700 Prunus persica HOM05D003422 ORTHO05D004263 6.8e-49 198.7 271 49.8
Cre02.g145231 Chlamydomonas reinhardtii HOM05D003422 ORTHO05D004263 3.4e-48 196.4 253 43.9
FvH4_7g31100 Fragaria vesca HOM05D003422 ORTHO05D004263 5.4e-46 189.1 226 46.5
PRCOL_00004566 Prasinoderma coloniale HOM05D003422 ORTHO05D004263 7.0e-46 188.7 249 45.4
SGA_v2.0_scaffold87G27078 Striga asiatica HOM05D003637 ORTHO05D004175 1.6e-45 187.6 214 63.1
Actinidia01349 Actinidia chinensis HOM05D003422 ORTHO05D004263 7.2e-43 178.7 307 45.0
Pp3c1_36430 Physcomitrium patens HOM05D003422 ORTHO05D004263 1.4e-41 174.5 284 38.7
Cfa026988 Carpinus fangiana HOM05D003422 ORTHO05D004263 9.8e-40 168.3 147 53.7
MCO01G280 Micromonas commoda HOM05D003422 ORTHO05D004263 4.1e-38 162.9 125 60.0
Eucgr.K00976 Eucalyptus grandis HOM05D003422 ORTHO05D004263 5.9e-37 159.1 296 43.6
Haze_26253 Corylus avellana HOM05D003422 ORTHO05D004263 9.5e-35 151.8 274 40.1
Lj1A759T42 Lonicera japonica HOM05D003422 ORTHO05D004263 1.7e-31 141.0 177 55.4
BolC1t04073H Brassica oleracea HOM05D003422 ORTHO05D004263 3.5e-29 133.3 71 81.7
C01p41190 Brassica napus HOM05D003422 ORTHO05D004263 6.0e-29 132.5 71 81.7
Eucgr.B00881 Eucalyptus grandis HOM05D003422 ORTHO05D004263 1.1e-27 128.3 68 91.2
Os07g0271600 Oryza sativa ssp. japonica HOM05D003422 ORTHO05D004263 4.0e-25 119.8 77 74.0
BolC4t24676H Brassica oleracea HOM05D003422 ORTHO05D004263 5.4e-22 109.4 119 53.8
AagrBONN_evm.TU.Sc2ySwM_344.1527 Anthoceros agrestis HOM05D003422 ORTHO05D004263 8.6e-20 102.1 222 38.3
BcaB04g17046 Brassica carinata HOM05D003422 ORTHO05D004263 1.1e-19 101.7 104 54.8
Ah.04g165080 Amaranthus hybridus HOM05D002611 ORTHO05D002822 4.3e-19 99.8 207 39.6
FAN06G3710 Fragaria x ananassa HOM05D003422 ORTHO05D004263 5.6e-19 99.4 46 91.3
BcaB07g33435 Brassica carinata HOM05D003422 ORTHO05D004263 6.8e-17 92.4 109 49.5
BcaB01g03637 Brassica carinata HOM05D003422 ORTHO05D004263 1.2e-16 91.7 110 50.9
Oeu036040.1 Olea europaea HOM05D003422 ORTHO05D004263 4.1e-14 83.2 131 41.2
BcaC02g10230 Brassica carinata HOM05D003422 ORTHO05D004263 1.5e-11 74.7 72 58.3
vmacro17128 Vaccinium macrocarpon HOM05D003422 ORTHO05D004263 2.5e-11 73.9 131 53.4
Nitab4.5_0000979g0020 Nicotiana tabacum HOM05D003422 ORTHO05D004263 7.3e-11 72.4 107 42.1
BcaB01g02833 Brassica carinata HOM05D003422 ORTHO05D004263 5.2e-09 66.2 109 43.1
SEGI_38458 Sequoiadendron giganteum HOM05D003422 ORTHO05D004263 5.4e-06 56.2 134 34.3
TWI60G0838 Tripterygium wilfordii HOM05D003422 ORTHO05D413943 5.4e-06 56.2 36 72.2


User provided reference genes

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