Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Sabra12G0047100 Salix brachista HOM05D007067 ORTHO05D008864 1.7e-99 365.9 177 100.0
Potri.012G068500 Populus trichocarpa HOM05D007067 ORTHO05D008864 8.8e-88 327.0 181 90.1
GSVIVG01004672001 Vitis vinifera HOM05D007067 ORTHO05D008864 1.7e-75 286.2 182 75.8
GSVIVG01005334001 Vitis vinifera HOM05D007067 ORTHO05D008864 1.7e-75 286.2 182 75.8
Manes.06G091000 Manihot esculenta HOM05D007067 ORTHO05D008864 2.3e-75 285.8 182 77.5
CSS0040643 Camellia sinensis var. sinensis HOM05D007067 ORTHO05D008864 2.1e-73 279.3 180 75.0
TWI60G1483 Tripterygium wilfordii HOM05D007067 ORTHO05D008864 5.8e-71 271.2 181 74.0
Actinidia04879 Actinidia chinensis HOM05D007067 ORTHO05D008864 7.5e-71 270.8 183 72.1
TAR622G0622 Trochodendron aralioides HOM05D007067 ORTHO05D008864 7.5e-71 270.8 182 70.9
Nn3g17293 Nelumbo nucifera HOM05D007067 ORTHO05D008864 4.9e-70 268.1 181 70.7
Cfa018925 Carpinus fangiana HOM05D007067 ORTHO05D008864 9.2e-69 263.8 180 71.7
Rhsim08G0153200 Rhododendron simsii HOM05D007067 ORTHO05D008864 1.6e-68 263.1 180 70.6
Cc04_g16320 Coffea canephora HOM05D007067 ORTHO05D008864 1.3e-67 260.0 181 69.6
MSTRG.9621 Avicennia marina HOM05D007067 ORTHO05D008864 1.7e-67 259.6 182 69.8
CiPaw.11G046200 Carya illinoinensis HOM05D007067 ORTHO05D008864 6.6e-67 257.7 181 69.1
vmacro17532 Vaccinium macrocarpon HOM05D007067 ORTHO05D008864 6.6e-67 257.7 180 67.2
QL10p017305 Quercus lobata HOM05D007067 ORTHO05D008864 1.1e-66 256.9 180 68.3
FAN13G0188 Fragaria x ananassa HOM05D007067 ORTHO05D008864 1.9e-66 256.1 185 71.4
FAN08G0270 Fragaria x ananassa HOM05D007067 ORTHO05D008864 2.5e-66 255.8 185 71.4
Prupe.5G195500 Prunus persica HOM05D007067 ORTHO05D008864 4.3e-66 255.0 185 71.4
FAN18G1220 Fragaria x ananassa HOM05D007067 ORTHO05D008864 5.6e-66 254.6 185 71.4
MD06G1195600 Malus domestica HOM05D007067 ORTHO05D008864 9.5e-66 253.8 182 72.0
Duzib205G1209 Durio zibethinus HOM05D007067 ORTHO05D008864 1.2e-65 253.4 188 70.7
Nitab4.5_0003381g0030 Nicotiana tabacum HOM05D007067 ORTHO05D008864 1.2e-65 253.4 178 68.5
RcHm_v2.0_Chr7g0181701 Rosa chinensis HOM05D007067 ORTHO05D008864 6.2e-65 251.1 185 71.4
Thecc.03G091100 Theobroma cacao HOM05D007067 ORTHO05D008864 1.1e-64 250.4 186 71.5
MD14G1202700 Malus domestica HOM05D007067 ORTHO05D008864 1.8e-64 249.6 183 71.6
MELO3C017182.2 Cucumis melo HOM05D007067 ORTHO05D008864 6.8e-64 247.7 183 69.9
MBI02_g12272_MAGBIO Magnolia biondii HOM05D007067 ORTHO05D008864 8.9e-64 247.3 182 63.7
CsaV3_1G002440 Cucumis sativus L. HOM05D007067 ORTHO05D008864 1.2e-63 246.9 183 69.9
ClCG06G016120 Citrullus lanatus HOM05D007067 ORTHO05D008864 2.6e-63 245.7 184 68.5
Nitab4.5_0005226g0040 Nicotiana tabacum HOM05D007067 ORTHO05D008864 4.4e-63 245.0 178 66.9
CANSAT56G4102 Cannabis sativa HOM05D007067 ORTHO05D008864 5.8e-63 244.6 185 68.6
CAN.G846.12 Capsicum annuum HOM05D007067 ORTHO05D008864 5.8e-63 244.6 178 65.7
Eucgr.K02487 Eucalyptus grandis HOM05D007067 ORTHO05D008864 7.5e-63 244.2 182 68.1
Migut.D01803 Erythranthe guttata HOM05D007067 ORTHO05D008864 1.9e-61 239.6 182 65.9
Hma1.2p1_0637F.1_g193620 Hydrangea macrophylla HOM05D007067 ORTHO05D008864 1.9e-61 239.6 127 86.6
Sed0012968 Sechium edule HOM05D007067 ORTHO05D008864 7.1e-61 237.7 183 68.9
SalBow3G2729 Salvia bowleyana HOM05D007067 ORTHO05D008864 9.2e-61 237.3 181 64.6
EL10Ac5g11044 Beta vulgaris HOM05D007067 ORTHO05D008864 1.2e-60 236.9 182 65.4
Cpa.g.sc111.20 Carica papaya HOM05D007067 ORTHO05D008864 2.7e-60 235.7 177 67.8
DCAR_016569 Daucus carota HOM05D007067 ORTHO05D008864 2.7e-60 235.7 184 67.4
Gorai.003G097800 Gossypium raimondii HOM05D007067 ORTHO05D008864 7.8e-60 234.2 180 68.3
Gohir.A03G067300 Gossypium hirsutum HOM05D007067 ORTHO05D008864 1.0e-59 233.8 180 68.3
Gohir.D03G093800 Gossypium hirsutum HOM05D007067 ORTHO05D008864 3.9e-59 231.9 180 67.8
Atru.chr9.195 Acer truncatum HOM05D007067 ORTHO05D008864 6.6e-59 231.1 176 67.6
Dinv38731 Davidia involucrata HOM05D007067 ORTHO05D008864 1.9e-58 229.6 181 65.2
Peaxi162Scf00106g00326 Petunia axillaris HOM05D007067 ORTHO05D008864 3.3e-58 228.8 168 66.1
PGSC0003DMG400021933 Solanum tuberosum HOM05D007067 ORTHO05D008864 4.3e-58 228.4 170 66.5
CDE02G3919 Ceratophyllum demersum HOM05D007067 ORTHO05D008864 2.1e-57 226.1 184 60.9
PSO063G5395 Papaver somniferum HOM05D007067 ORTHO05D008864 2.3e-56 222.6 170 64.7
AUR62008437 Chenopodium quinoa HOM05D007067 ORTHO05D008864 4.0e-56 221.9 150 72.0
PSO832G0421 Papaver somniferum HOM05D007067 ORTHO05D008864 5.2e-56 221.5 170 64.1
arahy.Tifrunner.gnm1.ann1.JMB3VF Arachis hypogaea HOM05D007067 ORTHO05D008864 1.5e-55 219.9 177 63.8
Solyc12g036170.2 Solanum lycopersicum HOM05D007067 ORTHO05D008864 1.5e-55 219.9 171 64.9
arahy.Tifrunner.gnm1.ann1.V8ZK3N Arachis hypogaea HOM05D007067 ORTHO05D008864 2.6e-55 219.2 177 63.8
Lj5A109T72 Lonicera japonica HOM05D007067 ORTHO05D008864 3.4e-55 218.8 148 71.6
Sopen12g016290 Solanum pennellii HOM05D007067 ORTHO05D008864 3.4e-55 218.8 170 64.7
Ca_27682_v3 Cicer arietinum L. HOM05D007067 ORTHO05D008864 5.8e-55 218.0 181 59.7
Aqoxy3G00483 Aquilegia oxysepala HOM05D007067 ORTHO05D008864 1.3e-54 216.9 182 61.5
Lj1g0007284 Lotus japonicus HOM05D007067 ORTHO05D008864 2.2e-54 216.1 181 61.3
Glyma.04G167400 Glycine max HOM05D007067 ORTHO05D008864 2.9e-54 215.7 182 61.5
Glyma.06G195200 Glycine max HOM05D007067 ORTHO05D008864 3.7e-54 215.3 182 61.0
THA.LOC104808257 Tarenaya hassleriana HOM05D007067 ORTHO05D008864 4.9e-54 214.9 192 59.4
HanXRQChr05g0156061 Helianthus annuus HOM05D007067 ORTHO05D008864 6.4e-54 214.5 176 63.6
TPR.G11876 Trifolium pratense HOM05D007067 ORTHO05D008864 1.1e-53 213.8 181 60.2
unitig_0.g778 Utricularia gibba HOM05D007067 ORTHO05D008864 1.1e-53 213.8 181 60.2
Sp1g16740 Schrenkiella parvula HOM05D007067 ORTHO05D008864 7.1e-53 211.1 184 61.4
Phvul.009G186200 Phaseolus vulgaris HOM05D007067 ORTHO05D008864 1.2e-52 210.3 182 61.0
Eucgr.K02485 Eucalyptus grandis HOM05D007067 ORTHO05D008864 1.6e-52 209.9 168 63.1
Medtr3g435320 Medicago truncatula HOM05D007067 ORTHO05D008864 2.1e-52 209.5 176 60.2
PGR044G1431 Punica granatum HOM05D007067 ORTHO05D008864 2.7e-52 209.1 179 62.6
CDE09G1053 Ceratophyllum demersum HOM05D007067 ORTHO05D008864 6.0e-52 208.0 119 78.2
Lsat_1_v5_gn_5_20880 Lactuca sativa HOM05D007067 ORTHO05D008864 6.0e-52 208.0 129 77.5
ECA246G0430 Erigeron canadensis HOM05D007067 ORTHO05D008864 1.0e-51 207.2 182 60.4
BcaC05g25773 Brassica carinata HOM05D007067 ORTHO05D008864 2.3e-51 206.1 143 70.6
C05p17040 Brassica napus HOM05D007067 ORTHO05D008864 2.3e-51 206.1 143 70.6
BolC5t30410H Brassica oleracea HOM05D007067 ORTHO05D008864 2.3e-51 206.1 143 70.6
Lalb_Chr08g0235641 Lupinus albus HOM05D007067 ORTHO05D008864 2.3e-51 206.1 187 58.3
A09p59720 Brassica napus HOM05D007067 ORTHO05D008864 3.0e-51 205.7 146 69.9
BraA09t41348Z Brassica rapa HOM05D007067 ORTHO05D008864 3.0e-51 205.7 146 69.9
ATR0564G121 Amborella trichopoda HOM05D007067 ORTHO05D008864 3.9e-51 205.3 193 58.0
AL1G31200 Arabidopsis lyrata HOM05D007067 ORTHO05D008864 3.9e-51 205.3 178 61.2
C08p43060 Brassica napus HOM05D007067 ORTHO05D008864 3.9e-51 205.3 144 70.1
AT1G18730 Arabidopsis thaliana HOM05D007067 ORTHO05D008864 5.1e-51 204.9 178 60.7
A06p14840 Brassica napus HOM05D007067 ORTHO05D008864 5.1e-51 204.9 184 59.8
BraA06t24606Z Brassica rapa HOM05D007067 ORTHO05D008864 5.1e-51 204.9 184 59.8
Thhalv10008902m.g Eutrema salsugineum HOM05D007067 ORTHO05D008864 1.5e-50 203.4 178 61.8
CARHR019370 Cardamine hirsuta HOM05D007067 ORTHO05D008864 2.5e-50 202.6 143 69.9
MBI02_g23462_MAGBIO Magnolia biondii HOM05D007067 ORTHO05D008864 2.5e-50 202.6 182 56.0
BcaB07g31890 Brassica carinata HOM05D007067 ORTHO05D008864 3.3e-50 202.2 185 59.5
BcaB03g14481 Brassica carinata HOM05D007067 ORTHO05D008864 4.3e-50 201.8 144 69.4
Carub.0001s1838 Capsella rubella HOM05D007067 ORTHO05D008864 9.6e-50 200.7 131 74.8
Psat5g201280 Pisum sativum HOM05D007067 ORTHO05D008864 3.6e-49 198.7 134 69.4
Peaxi162Scf00106g00037 Petunia axillaris HOM05D007067 ORTHO05D008864 1.1e-48 197.2 111 82.0
BolC8t51861H Brassica oleracea HOM05D007067 ORTHO05D008864 1.2e-47 193.7 132 73.5
Aa31LG7G3520 Aethionema arabicum HOM05D007067 ORTHO05D008864 3.4e-47 192.2 116 75.9
COL.COLO4_28333 Corchorus olitorius HOM05D007067 ORTHO05D008864 8.7e-43 177.6 180 57.2
Zm00001eb254450 Zea mays HOM05D007067 ORTHO05D008864 9.6e-42 174.1 161 55.3
AUR62021654 Chenopodium quinoa HOM05D007067 ORTHO05D008864 4.8e-41 171.8 150 57.3
Os02g0744000 Oryza sativa ssp. japonica HOM05D007067 ORTHO05D008864 6.9e-40 167.9 149 59.1
Ciclev10022880m.g Citrus clementina HOM05D007067 ORTHO05D008864 1.2e-36 157.1 112 67.0
Rhsim08G0153500 Rhododendron simsii HOM05D007067 ORTHO05D008864 1.8e-32 143.3 163 52.1
FvH4_5g14690 Fragaria vesca HOM05D007067 ORTHO05D008864 2.4e-32 142.9 124 62.9
BcaC07g41296 Brassica carinata HOM05D007067 ORTHO05D008864 3.1e-32 142.5 95 67.4
SEGI_39094 Sequoiadendron giganteum HOM05D007067 ORTHO05D008864 5.8e-31 138.3 146 50.7
Manes.06G090801 Manihot esculenta HOM05D007067 ORTHO05D008864 2.2e-22 109.8 96 59.4
CBR_g30507 Chara braunii HOM05D007067 ORTHO05D008864 3.2e-21 105.9 117 47.0
Mapoly0149s0008 Marchantia polymorpha HOM05D007067 ORTHO05D008864 3.5e-20 102.4 100 47.0
Pp3c16_3930 Physcomitrium patens HOM05D007067 ORTHO05D008864 2.3e-19 99.8 90 51.1
Haze_07309 Corylus avellana HOM05D007067 ORTHO05D008864 2.6e-15 86.3 180 36.1
Ah.11g048310 Amaranthus hybridus HOM05D007067 ORTHO05D008864 4.5e-15 85.5 96 50.0
COL.COLO4_28352 Corchorus olitorius HOM05D004600 ORTHO05D005471 1.5e-10 70.5 52 75.0
Rhsim08G0168600 Rhododendron simsii HOM05D000306 ORTHO05D023263 5.9e-07 58.5 180 28.9


User provided reference genes

Program Settings