Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Sabra12G0039900 Salix brachista HOM05D004946 ORTHO05D006101 1.5e-210 736.1 407 100.0
Potri.012G056200 Populus trichocarpa HOM05D004946 ORTHO05D006101 1.6e-156 556.6 434 75.8
Atru.chr9.855 Acer truncatum HOM05D004946 ORTHO05D006101 1.8e-99 367.1 435 52.6
Thecc.03G035700 Theobroma cacao HOM05D004946 ORTHO05D006101 4.1e-96 355.9 437 51.5
MD14G1227000 Malus domestica HOM05D004946 ORTHO05D006101 1.3e-94 350.9 436 52.8
Dinv15680 Davidia involucrata HOM05D004946 ORTHO05D006101 5.5e-93 345.5 436 51.4
Prupe.5G221700 Prunus persica HOM05D004946 ORTHO05D006101 1.6e-92 344.0 434 51.2
Haze_18683 Corylus avellana HOM05D004946 ORTHO05D006101 4.7e-92 342.4 438 50.5
Duzib084G0074 Durio zibethinus HOM05D004946 ORTHO05D006101 6.1e-92 342.0 438 51.8
Manes.01G011100 Manihot esculenta HOM05D004946 ORTHO05D006101 6.1e-92 342.0 434 56.2
FvH4_5g12080 Fragaria vesca HOM05D004946 ORTHO05D006101 3.3e-90 336.3 435 52.6
Gohir.D08G105600 Gossypium hirsutum HOM05D004946 ORTHO05D006101 5.7e-90 335.5 435 50.6
FAN18G3139 Fragaria x ananassa HOM05D004946 ORTHO05D006101 2.2e-89 333.6 435 52.4
FAN08G1246 Fragaria x ananassa HOM05D004946 ORTHO05D006101 1.1e-88 331.3 435 52.0
FAN18G2620 Fragaria x ananassa HOM05D004946 ORTHO05D006101 3.1e-88 329.7 435 52.0
Cfa019764 Carpinus fangiana HOM05D004946 ORTHO05D006101 1.2e-87 327.8 421 49.9
QL10p025417 Quercus lobata HOM05D004946 ORTHO05D006101 1.2e-87 327.8 438 50.2
FAN04G0770 Fragaria x ananassa HOM05D004946 ORTHO05D006101 3.8e-86 322.8 435 51.7
Hma1.2p1_2409F.1_g321510 Hydrangea macrophylla HOM05D004946 ORTHO05D006101 3.4e-82 309.7 472 46.6
RcHm_v2.0_Chr7g0185491 Rosa chinensis HOM05D004946 ORTHO05D006101 7.5e-82 308.5 435 49.4
Gohir.D09G049200 Gossypium hirsutum HOM05D004946 ORTHO05D006101 9.8e-82 308.1 437 49.2
Gorai.006G060600 Gossypium raimondii HOM05D004946 ORTHO05D006101 3.7e-81 306.2 437 49.0
COL.COLO4_11303 Corchorus olitorius HOM05D004946 ORTHO05D006101 3.1e-80 303.1 382 52.1
Gorai.004G113500 Gossypium raimondii HOM05D004946 ORTHO05D006101 5.4e-80 302.4 435 48.7
Hma1.2p1_0701F.1_g205890 Hydrangea macrophylla HOM05D004946 ORTHO05D006101 7.0e-80 302.0 377 52.8
Actinidia18931 Actinidia chinensis HOM05D004946 ORTHO05D006101 1.2e-79 301.2 437 47.6
FAN13G1851 Fragaria x ananassa HOM05D004946 ORTHO05D006101 2.0e-79 300.4 435 49.7
TWI15G0834 Tripterygium wilfordii HOM05D004946 ORTHO05D006101 1.3e-78 297.7 434 47.2
Dinv28107 Davidia involucrata HOM05D004946 ORTHO05D006101 1.1e-77 294.7 436 46.6
Gohir.A08G095000 Gossypium hirsutum HOM05D004946 ORTHO05D006101 5.5e-77 292.4 344 52.6
Medtr8g104260 Medicago truncatula HOM05D004946 ORTHO05D006101 5.5e-77 292.4 435 49.0
CiPaw.16G086800 Carya illinoinensis HOM05D004946 ORTHO05D006101 1.2e-76 291.2 447 47.0
Glyma.10G040800 Glycine max HOM05D004946 ORTHO05D006101 3.6e-76 289.7 433 49.2
VMungo0720G2584 Vigna mungo HOM05D004946 ORTHO05D006101 1.5e-74 284.3 445 46.1
Ciclev10020493m.g Citrus clementina HOM05D004946 ORTHO05D006101 8.3e-73 278.5 435 45.1
Psat7g010600 Pisum sativum HOM05D004946 ORTHO05D006101 8.3e-73 278.5 437 47.1
arahy.Tifrunner.gnm1.ann1.G56NCJ Arachis hypogaea HOM05D004946 ORTHO05D006101 1.1e-72 278.1 437 45.3
arahy.Tifrunner.gnm1.ann1.94ZJ0E Arachis hypogaea HOM05D004946 ORTHO05D006101 5.4e-72 275.8 437 45.5
arahy.Tifrunner.gnm1.ann1.N3S6I2 Arachis hypogaea HOM05D004946 ORTHO05D006101 7.8e-71 271.9 437 44.9
CSS0004173 Camellia sinensis var. sinensis HOM05D004946 ORTHO05D006101 2.9e-70 270.0 437 44.2
Rhsim12G0143100 Rhododendron simsii HOM05D004946 ORTHO05D006101 1.1e-69 268.1 454 43.4
Gohir.A09G048000 Gossypium hirsutum HOM05D004946 ORTHO05D006101 2.5e-69 266.9 377 49.1
arahy.Tifrunner.gnm1.ann1.X2WJJP Arachis hypogaea HOM05D004946 ORTHO05D006101 3.3e-69 266.5 433 44.1
PGR044G1576 Punica granatum HOM05D004946 ORTHO05D006101 3.6e-68 263.1 440 46.4
Lalb_Chr09g0331081 Lupinus albus HOM05D004946 ORTHO05D006101 8.0e-68 261.9 437 43.9
Lj4g0022250 Lotus japonicus HOM05D004946 ORTHO05D006101 4.0e-67 259.6 444 43.7
Cc04_g07080 Coffea canephora HOM05D004946 ORTHO05D006101 2.6e-66 256.9 436 43.8
CANSAT80G1182 Cannabis sativa HOM05D004946 ORTHO05D006101 5.8e-66 255.8 441 44.4
Eucgr.K02226 Eucalyptus grandis HOM05D004946 ORTHO05D006101 1.3e-65 254.6 449 43.2
TPR.G32702 Trifolium pratense HOM05D004946 ORTHO05D006101 1.7e-65 254.2 435 43.9
Lalb_Chr05g0222491 Lupinus albus HOM05D004946 ORTHO05D006101 6.4e-65 252.3 436 43.3
Ca_25442_v3 Cicer arietinum L. HOM05D004946 ORTHO05D006101 3.2e-64 250.0 438 43.4
MSTRG.11071 Avicennia marina HOM05D004946 ORTHO05D006101 4.6e-63 246.1 439 44.4
TAR629G2125 Trochodendron aralioides HOM05D004946 ORTHO05D006101 1.3e-62 244.6 352 47.7
MELO3C002087.2 Cucumis melo HOM05D004946 ORTHO05D006101 8.6e-62 241.9 440 43.0
CsaV3_1G006630 Cucumis sativus L. HOM05D004946 ORTHO05D006101 3.6e-60 236.5 440 42.7
Actinidia35090 Actinidia chinensis HOM05D004946 ORTHO05D006101 8.0e-60 235.3 347 47.3
Glyma.08G041600 Glycine max HOM05D004946 ORTHO05D006101 1.1e-59 235.0 380 48.2
Aqoxy3G00287 Aquilegia oxysepala HOM05D004946 ORTHO05D006101 5.8e-58 229.2 436 42.7
Oeu064714.1 Olea europaea HOM05D004946 ORTHO05D006101 5.8e-58 229.2 440 42.7
PGSC0003DMG401005635 Solanum tuberosum HOM05D004946 ORTHO05D006101 5.8e-58 229.2 431 42.0
Nn4g23854 Nelumbo nucifera HOM05D004946 ORTHO05D006101 2.9e-57 226.9 429 42.0
Sc12g0007670 Simmondsia chinensis HOM05D004946 ORTHO05D006101 3.7e-57 226.5 441 40.1
Sopen03g038310 Solanum pennellii HOM05D004946 ORTHO05D006101 6.4e-57 225.7 431 41.3
vmacro16446 Vaccinium macrocarpon HOM05D004946 ORTHO05D006101 1.1e-56 224.9 450 40.2
Phvul.007G154000 Phaseolus vulgaris HOM05D004946 ORTHO05D006101 2.1e-55 220.7 440 40.9
CARHR066930 Cardamine hirsuta HOM05D004946 ORTHO05D006101 2.3e-54 217.2 451 42.6
AUR62038115 Chenopodium quinoa HOM05D004946 ORTHO05D006101 5.6e-53 212.6 385 42.9
CAN.G1889.4 Capsicum annuum HOM05D004946 ORTHO05D006101 9.5e-53 211.8 432 40.5
Nitab4.5_0000974g0090 Nicotiana tabacum HOM05D004946 ORTHO05D006101 4.7e-52 209.5 430 43.0
AT1G73840 Arabidopsis thaliana HOM05D004946 ORTHO05D006101 8.1e-52 208.8 447 43.6
ECA238G2506 Erigeron canadensis HOM05D004946 ORTHO05D006101 1.1e-51 208.4 430 39.3
Nn3g17855 Nelumbo nucifera HOM05D004946 ORTHO05D006101 1.1e-51 208.4 436 39.9
Sp5g29040 Schrenkiella parvula HOM05D004946 ORTHO05D006101 1.1e-51 208.4 448 41.7
AL2G33660 Arabidopsis lyrata HOM05D004946 ORTHO05D006101 2.3e-51 207.2 447 42.7
AUR62008463 Chenopodium quinoa HOM05D004946 ORTHO05D006101 7.5e-50 202.2 361 41.8
Oeu056801.1 Olea europaea HOM05D004946 ORTHO05D006101 7.5e-50 202.2 426 40.8
Migut.I00881 Erythranthe guttata HOM05D004946 ORTHO05D006101 9.9e-50 201.8 468 39.3
AUR62021632 Chenopodium quinoa HOM05D004946 ORTHO05D006101 3.7e-49 199.9 361 41.6
Ca_25456_v3 Cicer arietinum L. HOM05D004946 ORTHO05D006101 3.7e-49 199.9 292 49.0
ClCG04G011130 Citrullus lanatus HOM05D004946 ORTHO05D006101 6.4e-49 199.1 456 38.6
Peaxi162Scf00015g01034 Petunia axillaris HOM05D004946 ORTHO05D006101 5.4e-48 196.1 353 46.2
BcaC08g45619 Brassica carinata HOM05D004946 ORTHO05D006101 1.2e-47 194.9 447 40.5
PSO478G0599 Papaver somniferum HOM05D004946 ORTHO05D006101 2.7e-47 193.7 440 40.9
Nitab4.5_0000208g0330 Nicotiana tabacum HOM05D004946 ORTHO05D006101 4.6e-47 193.0 437 39.1
BolC6t38494H Brassica oleracea HOM05D004946 ORTHO05D006101 7.8e-47 192.2 447 40.5
A07p29630 Brassica napus HOM05D004946 ORTHO05D006101 1.3e-46 191.4 448 40.2
BcaB03g15098 Brassica carinata HOM05D004946 ORTHO05D006101 1.7e-46 191.0 446 40.6
Carub.0002s2060 Capsella rubella HOM05D004946 ORTHO05D006101 2.3e-46 190.7 447 41.2
Aa31LG4G4160 Aethionema arabicum HOM05D004946 ORTHO05D006101 3.0e-46 190.3 469 39.0
C06p33810 Brassica napus HOM05D004946 ORTHO05D006101 8.6e-46 188.7 447 40.3
Sed0008793 Sechium edule HOM05D004946 ORTHO05D006101 1.9e-45 187.6 311 44.7
DCAR_023206 Daucus carota HOM05D004946 ORTHO05D006101 3.3e-45 186.8 380 41.6
Glyma.05G234300 Glycine max HOM05D004946 ORTHO05D006101 4.3e-45 186.4 377 42.4
PSO017G0469 Papaver somniferum HOM05D004946 ORTHO05D006101 4.7e-44 183.0 442 38.9
CDE02G4219 Ceratophyllum demersum HOM05D004946 ORTHO05D006101 1.8e-43 181.0 446 37.9
Nitab4.5_0012710g0020 Nicotiana tabacum HOM05D004946 ORTHO05D006101 1.8e-43 181.0 437 37.8
BcaB03g15731 Brassica carinata HOM05D004946 ORTHO05D006101 3.1e-43 180.3 451 40.6
Thhalv10018702m.g Eutrema salsugineum HOM05D004946 ORTHO05D006101 8.9e-43 178.7 455 39.6
BcaB03g15093 Brassica carinata HOM05D004946 ORTHO05D006101 2.0e-42 177.6 448 39.7
C06p47990 Brassica napus HOM05D004946 ORTHO05D006101 2.0e-42 177.6 448 39.7
BraA07t30604Z Brassica rapa HOM05D004946 ORTHO05D006101 3.4e-42 176.8 444 39.6
BraA07t31519Z Brassica rapa HOM05D004946 ORTHO05D006101 3.8e-41 173.3 453 38.9
HPP92_004811 Vanilla planifolia HOM05D004946 ORTHO05D006101 4.9e-41 172.9 429 36.6
Nitab4.5_0009306g0010 Nicotiana tabacum HOM05D004946 ORTHO05D006101 3.2e-40 170.2 365 39.5
THA.LOC104812144 Tarenaya hassleriana HOM05D004946 ORTHO05D006101 1.6e-39 167.9 446 38.3
A07p39700 Brassica napus HOM05D004946 ORTHO05D006101 4.6e-39 166.4 453 38.6
GSVIVG01008293001 Vitis vinifera HOM05D004946 ORTHO05D006101 4.6e-39 166.4 441 35.8
GSVIVG01008294001 Vitis vinifera HOM05D004946 ORTHO05D006101 6.0e-39 166.0 420 37.1
BcaB03g15090 Brassica carinata HOM05D004946 ORTHO05D006101 8.7e-38 162.2 444 38.5
Gohir.D05G109701 Gossypium hirsutum HOM05D004946 ORTHO05D006101 2.5e-37 160.6 217 49.3
Gohir.D11G132850 Gossypium hirsutum HOM05D004946 ORTHO05D006101 4.3e-37 159.8 217 49.3
unitig_8.g3895 Utricularia gibba HOM05D004946 ORTHO05D006101 2.8e-36 157.1 438 34.0
Peaxi162Scf00634g00318 Petunia axillaris HOM05D004946 ORTHO05D006101 6.2e-36 156.0 367 39.2
Solyc03g119460.4 Solanum lycopersicum HOM05D004946 ORTHO05D006101 3.1e-35 153.7 431 34.8
Cpa.g.sc3.508 Carica papaya HOM05D004946 ORTHO05D006101 5.3e-35 152.9 409 35.7
HanXRQChr06g0184711 Helianthus annuus HOM05D004946 ORTHO05D006101 1.2e-34 151.8 434 38.5
Ah.11g048200 Amaranthus hybridus HOM05D004946 ORTHO05D006101 3.5e-31 140.2 422 34.8
Gohir.D08G202000 Gossypium hirsutum HOM05D004946 ORTHO05D006101 4.6e-31 139.8 194 49.5
SGA_v2.0_scaffold5G02571 Striga asiatica HOM05D004946 ORTHO05D006101 4.8e-28 129.8 446 34.1
Lsat_1_v5_gn_2_12261 Lactuca sativa HOM05D004946 ORTHO05D006101 6.2e-28 129.4 439 31.2
EL10Ac5g11063 Beta vulgaris HOM05D004946 ORTHO05D006101 1.1e-27 128.6 251 41.4
BcaB03g15096 Brassica carinata HOM05D004946 ORTHO05D006101 4.0e-27 126.7 357 37.8
CDE06G1062 Ceratophyllum demersum HOM05D004946 ORTHO05D006101 9.0e-27 125.6 274 38.0
HPP92_004808 Vanilla planifolia HOM05D004946 ORTHO05D006101 1.5e-26 124.8 394 34.0
Ca_15108_v3 Cicer arietinum L. HOM05D004946 ORTHO05D006101 1.4e-24 118.2 191 45.0
Zm00001eb292700 Zea mays HOM05D004946 ORTHO05D006101 8.7e-22 109.0 431 31.8
BcaNung06927 Brassica carinata HOM05D004946 ORTHO05D006101 2.5e-21 107.5 208 44.2
ATR1125G052 Amborella trichopoda HOM05D004946 ORTHO05D006101 8.1e-20 102.4 435 32.4
DCAR_015143 Daucus carota HOM05D004946 ORTHO05D006101 8.4e-17 92.4 374 30.2
MBI02_g11379_MAGBIO Magnolia biondii HOM05D004946 ORTHO05D006101 3.2e-16 90.5 172 44.2
Gohir.A11G277050 Gossypium hirsutum HOM05D004946 ORTHO05D006101 4.6e-15 86.7 122 50.0
SGA_v2.0_scaffold37G14831 Striga asiatica HOM05D004946 ORTHO05D006101 2.3e-14 84.3 361 33.0
CANSAT80G2575 Cannabis sativa HOM05D004946 ORTHO05D006101 1.3e-12 78.6 114 47.4
BolC6t39834H Brassica oleracea HOM05D004946 ORTHO05D006101 2.8e-12 77.4 215 37.2
Os05g0513300 Oryza sativa ssp. japonica HOM05D004946 ORTHO05D006101 2.4e-11 74.3 271 32.1
Glyma.13G127700 Glycine max HOM05D004946 ORTHO05D006101 4.5e-10 70.1 138 42.8
CDE06G2845 Ceratophyllum demersum HOM05D004946 ORTHO05D006101 1.1e-08 65.5 41 82.9
QL02p035395 Quercus lobata HOM05D004266 ORTHO05D005151 2.1e-07 61.2 441 27.7
CAN.G1166.27 Capsicum annuum HOM05D004266 ORTHO05D005151 3.0e-06 57.4 43 67.4
Lsat_1_v5_gn_9_93500 Lactuca sativa HOM05D001433 ORTHO05D013129 3.9e-06 57.0 40 72.5


User provided reference genes

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