Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Sabra12G0022900 Salix brachista HOM05D005720 ORTHO05D006984 0.0e+00 1965.7 994 100.0
Potri.012G033800 Populus trichocarpa HOM05D005720 ORTHO05D006984 0.0e+00 1777.7 1000 90.9
Manes.06G155900 Manihot esculenta HOM05D005720 ORTHO05D006984 0.0e+00 1102.4 1004 60.1
QL09p011597 Quercus lobata HOM05D005720 ORTHO05D006984 7.2e-296 1020.8 1024 56.5
Cfa016346 Carpinus fangiana HOM05D005720 ORTHO05D006984 2.7e-295 1018.8 1021 57.1
TWI39G1277 Tripterygium wilfordii HOM05D005720 ORTHO05D006984 3.1e-283 978.8 1015 53.9
CiPaw.06G006200 Carya illinoinensis HOM05D005720 ORTHO05D006984 1.3e-276 956.8 1013 54.6
Thecc.03G190400 Theobroma cacao HOM05D005720 ORTHO05D006984 3.2e-267 925.6 1021 52.6
Prupe.2G305400 Prunus persica HOM05D005720 ORTHO05D006984 1.2e-266 923.7 1018 53.7
MD07G1283200 Malus domestica HOM05D005720 ORTHO05D006984 1.2e-263 913.7 1018 52.7
MD01G1213400 Malus domestica HOM05D005720 ORTHO05D006984 2.5e-256 889.4 1016 51.8
Haze_00092 Corylus avellana HOM05D005720 ORTHO05D006984 1.2e-255 887.1 1017 52.6
GSVIVG01028746001 Vitis vinifera HOM05D005720 ORTHO05D006984 1.6e-250 870.2 1012 50.5
COL.COLO4_24780 Corchorus olitorius HOM05D005720 ORTHO05D006984 8.6e-249 864.4 1069 49.0
Duzib084G1243 Durio zibethinus HOM05D005720 ORTHO05D006984 1.6e-247 860.1 1016 50.0
Gohir.D09G177900 Gossypium hirsutum HOM05D005720 ORTHO05D006984 2.7e-242 842.8 1012 50.1
Gohir.A09G183200 Gossypium hirsutum HOM05D005720 ORTHO05D006984 2.5e-240 836.3 1011 49.6
Dinv28352 Davidia involucrata HOM05D005720 ORTHO05D006984 2.1e-239 833.2 1027 49.9
FvH4_7g30790 Fragaria vesca HOM05D005720 ORTHO05D006984 1.1e-238 830.9 1011 51.0
FAN01G1865 Fragaria x ananassa HOM05D005720 ORTHO05D006984 1.2e-237 827.4 1015 50.4
FAN06G1427 Fragaria x ananassa HOM05D005720 ORTHO05D006984 5.8e-237 825.1 1018 50.4
FAN06G3446 Fragaria x ananassa HOM05D005720 ORTHO05D006984 9.9e-237 824.3 1015 50.4
FAN03G0014 Fragaria x ananassa HOM05D005720 ORTHO05D006984 1.9e-232 810.1 1014 50.3
Gorai.006G200000 Gossypium raimondii HOM05D005720 ORTHO05D006984 8.1e-231 804.7 1010 48.3
RcHm_v2.0_Chr1g0379731 Rosa chinensis HOM05D005720 ORTHO05D006984 5.3e-222 775.4 895 53.2
FAN10G0387 Fragaria x ananassa HOM05D005720 ORTHO05D006984 1.2e-218 764.2 1000 48.5
Nn1g01775 Nelumbo nucifera HOM05D005720 ORTHO05D006984 1.6e-218 763.8 1021 46.8
arahy.Tifrunner.gnm1.ann1.35A5BC Arachis hypogaea HOM05D005720 ORTHO05D006984 3.9e-217 759.2 1064 45.2
arahy.Tifrunner.gnm1.ann1.YA4Y9S Arachis hypogaea HOM05D005720 ORTHO05D006984 2.4e-214 750.0 1064 45.1
Cpa.g.sc3.32 Carica papaya HOM05D005720 ORTHO05D006984 1.0e-212 744.6 1000 46.8
Eucgr.K00315 Eucalyptus grandis HOM05D005720 ORTHO05D006984 1.4e-211 740.7 1016 45.4
Hma1.2p1_0142F.1_g064130 Hydrangea macrophylla HOM05D005720 ORTHO05D006984 3.2e-211 739.6 1023 45.7
Lalb_Chr06g0161451 Lupinus albus HOM05D005720 ORTHO05D006984 2.2e-207 726.9 1012 45.2
Rhsim03G0197100 Rhododendron simsii HOM05D005720 ORTHO05D006984 2.0e-205 720.3 1018 45.4
Ca_27881_v3 Cicer arietinum L. HOM05D005720 ORTHO05D006984 3.4e-205 719.5 1006 45.6
MD01G1213200 Malus domestica HOM05D005720 ORTHO05D006984 4.5e-205 719.2 883 49.4
CsaV3_4G002370 Cucumis sativus L. HOM05D005720 ORTHO05D006984 2.2e-204 716.8 1020 44.9
Glyma.16G069100 Glycine max HOM05D005720 ORTHO05D006984 1.3e-199 701.0 1008 44.5
TAR636G3648 Trochodendron aralioides HOM05D005720 ORTHO05D006984 1.8e-198 697.2 797 51.4
MELO3C017804.2 Cucumis melo HOM05D005720 ORTHO05D006984 2.4e-198 696.8 983 44.9
Hund11695 Selenicereus undatus HOM05D005720 ORTHO05D006984 1.0e-196 691.4 1025 43.0
AUR62031469 Chenopodium quinoa HOM05D005720 ORTHO05D006984 3.6e-194 682.9 1029 43.2
Lj3g0007394 Lotus japonicus HOM05D005720 ORTHO05D006984 3.0e-193 679.9 1011 43.7
TPR.G16464 Trifolium pratense HOM05D005720 ORTHO05D006984 3.9e-193 679.5 1010 43.8
FAN10G2558 Fragaria x ananassa HOM05D005720 ORTHO05D006984 2.2e-191 673.7 826 50.0
THA.LOC104825125 Tarenaya hassleriana HOM05D005720 ORTHO05D006984 8.2e-191 671.8 1009 43.6
EL10Ac3g05366 Beta vulgaris HOM05D005720 ORTHO05D006984 8.5e-188 661.8 1026 42.3
MBI06_g04292_MAGBIO Magnolia biondii HOM05D005720 ORTHO05D006984 3.2e-187 659.8 1028 43.2
ClCG07G011830 Citrullus lanatus HOM05D005720 ORTHO05D006984 5.3e-182 642.5 1016 42.3
Aa31LG3G9180 Aethionema arabicum HOM05D005720 ORTHO05D006984 1.6e-181 641.0 1002 41.4
Medtr8g058270 Medicago truncatula HOM05D005720 ORTHO05D006984 2.6e-181 640.2 1031 41.4
Ah.07g206170 Amaranthus hybridus HOM05D005720 ORTHO05D006984 1.3e-180 637.9 1043 41.3
CARHR265920 Cardamine hirsuta HOM05D005720 ORTHO05D006984 3.6e-178 629.8 1004 41.0
Aqoxy7G00210 Aquilegia oxysepala HOM05D005720 ORTHO05D006984 3.0e-177 626.7 1015 43.1
Oeu037117.2 Olea europaea HOM05D005720 ORTHO05D006984 1.5e-176 624.4 1011 41.6
PSO135G0324 Papaver somniferum HOM05D005720 ORTHO05D006984 2.0e-176 624.0 1009 41.9
Sc13g0009450 Simmondsia chinensis HOM05D005720 ORTHO05D006984 4.8e-175 619.4 1015 40.7
PSO384G4812 Papaver somniferum HOM05D005720 ORTHO05D006984 1.4e-174 617.8 1008 41.9
TAR629G0723 Trochodendron aralioides HOM05D005720 ORTHO05D006984 1.4e-174 617.8 761 49.4
AL8G27450 Arabidopsis lyrata HOM05D005720 ORTHO05D006984 4.5e-173 612.8 1010 40.5
AT5G52950 Arabidopsis thaliana HOM05D005720 ORTHO05D006984 4.5e-173 612.8 1013 41.7
HanXRQChr01g0031161 Helianthus annuus HOM05D005720 ORTHO05D006984 8.5e-172 608.6 1011 42.3
VMungo1127G0215 Vigna mungo HOM05D005720 ORTHO05D006984 2.5e-171 607.1 995 41.5
Actinidia08611 Actinidia chinensis HOM05D005720 ORTHO05D006984 7.2e-171 605.5 918 43.6
Thhalv10012590m.g Eutrema salsugineum HOM05D005720 ORTHO05D006984 1.6e-170 604.4 1005 40.7
BolC2t08045H Brassica oleracea HOM05D005720 ORTHO05D006984 3.0e-169 600.1 1008 40.4
C02p19150 Brassica napus HOM05D005720 ORTHO05D006984 2.6e-168 597.0 1008 40.4
Sp6g15110 Schrenkiella parvula HOM05D005720 ORTHO05D006984 3.4e-168 596.7 1004 40.4
Lsat_1_v5_gn_1_45000 Lactuca sativa HOM05D005720 ORTHO05D006984 2.2e-167 594.0 1025 41.5
Cc02_g02050 Coffea canephora HOM05D005720 ORTHO05D006984 3.7e-167 593.2 1016 40.3
C09p42670 Brassica napus HOM05D005720 ORTHO05D006984 4.8e-167 592.8 1003 39.9
BolC9t57143H Brassica oleracea HOM05D005720 ORTHO05D006984 4.8e-167 592.8 1003 39.9
BcaC03g14481 Brassica carinata HOM05D005720 ORTHO05D006984 1.1e-166 591.7 1005 40.0
DCAR_010640 Daucus carota HOM05D005720 ORTHO05D006984 1.8e-166 590.9 1002 41.2
Carub.0008s1313 Capsella rubella HOM05D005720 ORTHO05D006984 9.1e-166 588.6 1018 39.2
BraA02t06213Z Brassica rapa HOM05D005720 ORTHO05D006984 1.6e-165 587.8 1007 40.0
Nitab4.5_0000472g0110 Nicotiana tabacum HOM05D005720 ORTHO05D006984 7.7e-165 585.5 1011 41.3
A02p11480 Brassica napus HOM05D005720 ORTHO05D006984 1.3e-164 584.7 1008 39.7
AUR62021063 Chenopodium quinoa HOM05D005720 ORTHO05D006984 7.2e-163 578.9 1030 39.6
MSTRG.27056 Avicennia marina HOM05D005720 ORTHO05D006984 4.0e-161 573.2 1007 40.2
HanXRQChr11g0353671 Helianthus annuus HOM05D005720 ORTHO05D006984 1.8e-158 564.3 1004 41.0
Sopen03g003510 Solanum pennellii HOM05D005720 ORTHO05D006984 1.8e-158 564.3 1013 40.5
Solyc03g007550.4 Solanum lycopersicum HOM05D005720 ORTHO05D006984 2.7e-157 560.5 1011 40.7
Psat4g140280 Pisum sativum HOM05D005720 ORTHO05D006984 2.5e-155 553.9 888 40.7
SalBow4G2744 Salvia bowleyana HOM05D005720 ORTHO05D006984 1.6e-154 551.2 1013 39.4
Peaxi162Scf00904g00464 Petunia axillaris HOM05D005720 ORTHO05D006984 2.1e-154 550.8 1016 40.7
SalBow4G2908 Salvia bowleyana HOM05D005720 ORTHO05D006984 4.7e-154 549.7 1006 39.5
ECA248G2416 Erigeron canadensis HOM05D005720 ORTHO05D006984 6.1e-154 549.3 995 40.1
Migut.F00255 Erythranthe guttata HOM05D005720 ORTHO05D006984 3.9e-148 530.0 1017 38.6
CAN.G108.10 Capsicum annuum HOM05D005720 ORTHO05D006984 8.0e-146 522.3 1023 39.6
SHI10811 Sapria himalayana HOM05D005720 ORTHO05D006984 6.8e-137 492.7 903 38.5
PGR142G3228 Punica granatum HOM05D005720 ORTHO05D006984 2.2e-135 487.6 1003 36.7
Hma1.2p1_1891F.1_g306670 Hydrangea macrophylla HOM05D005720 ORTHO05D006984 3.0e-132 477.2 931 37.7
Phvul.011G167400 Phaseolus vulgaris HOM05D005720 ORTHO05D006984 4.3e-131 473.4 673 44.1
Nitab4.5_0001331g0120 Nicotiana tabacum HOM05D005720 ORTHO05D006984 4.9e-127 459.9 1008 36.6
SGA_v2.0_scaffold192G40596 Striga asiatica HOM05D005720 ORTHO05D006984 1.1e-121 442.2 979 36.6
CDE02G2607 Ceratophyllum demersum HOM05D005720 ORTHO05D006984 1.1e-118 432.2 889 35.7
unitig_747.g21855 Utricularia gibba HOM05D000121 ORTHO05D000102 7.3e-115 419.5 1043 34.0
vmacro06588 Vaccinium macrocarpon HOM05D005720 ORTHO05D006984 1.7e-111 408.3 622 41.8
HPP92_005221 Vanilla planifolia HOM05D005720 ORTHO05D006984 4.2e-110 403.7 978 33.8
ATR1131G019 Amborella trichopoda HOM05D005720 ORTHO05D006984 1.4e-105 388.7 1013 34.2
BcaB08g35658 Brassica carinata HOM05D005720 ORTHO05D006984 6.0e-101 373.2 614 37.9
Hma1.2p1_0142F.1_g064120 Hydrangea macrophylla HOM05D005720 ORTHO05D006984 1.0e-100 372.5 476 46.8
Lj3A914T79 Lonicera japonica HOM05D005720 ORTHO05D006984 3.3e-99 367.5 605 41.3
CSS0019438 Camellia sinensis var. sinensis HOM05D005720 ORTHO05D006984 4.3e-99 367.1 479 48.4
Zm00001eb119640 Zea mays HOM05D005720 ORTHO05D006984 2.2e-90 338.2 1042 29.9
CSS0038820 Camellia sinensis var. sinensis HOM05D005720 ORTHO05D006984 8.2e-90 336.3 479 45.7
Sed0011275 Sechium edule HOM05D005720 ORTHO05D006984 3.9e-84 317.4 424 46.5
Hma1.2p1_0142F.1_g064140 Hydrangea macrophylla HOM05D005720 ORTHO05D006984 2.8e-82 311.2 429 46.9
Psat0s2250g0040 Pisum sativum HOM05D005720 ORTHO05D006984 2.0e-80 305.1 376 48.9
SEGI_30168 Sequoiadendron giganteum HOM05D005720 ORTHO05D006984 1.7e-79 302.0 1082 29.7
BcaB05g21993 Brassica carinata HOM05D005720 ORTHO05D006984 1.5e-75 288.9 1003 28.8
HPP92_005214 Vanilla planifolia HOM05D005720 ORTHO05D006984 1.9e-70 271.9 958 28.6
TAR629G3278 Trochodendron aralioides HOM05D005720 ORTHO05D006984 1.8e-65 255.4 249 57.8
Lj3P914T60 Lonicera japonica HOM05D005720 ORTHO05D006984 2.1e-61 241.9 321 47.0
BraA10t43127Z Brassica rapa HOM05D005720 ORTHO05D006984 1.7e-55 222.2 302 45.4
vmacro06589 Vaccinium macrocarpon HOM05D005720 ORTHO05D006984 1.5e-54 219.2 305 46.2
MBI16_g03131_MAGBIO Magnolia biondii HOM05D005720 ORTHO05D006984 2.3e-44 185.3 514 32.7
PGSC0003DMG400006595 Solanum tuberosum HOM05D005720 ORTHO05D006984 5.2e-44 184.1 247 49.0
SEGI_32546 Sequoiadendron giganteum HOM05D005720 ORTHO05D006984 9.2e-41 173.3 995 23.7
Os01g0222300 Oryza sativa ssp. japonica HOM05D005720 ORTHO05D006984 3.2e-33 148.3 374 32.6
SHI10812 Sapria himalayana HOM05D005720 ORTHO05D006984 2.5e-22 112.1 155 45.2
RcHm_v2.0_Chr1g0379741 Rosa chinensis HOM05D005720 ORTHO05D006984 2.4e-17 95.5 90 64.4
MBI16_g03132_MAGBIO Magnolia biondii HOM05D005720 ORTHO05D006984 7.3e-14 84.0 188 37.2
BcaB08g35657 Brassica carinata HOM05D005720 ORTHO05D006984 5.4e-09 67.8 172 32.6
Actinidia34180 Actinidia chinensis HOM05D005720 ORTHO05D006984 9.3e-09 67.0 121 41.3
Pp3c15_13500 Physcomitrium patens HOM05D005720 ORTHO05D006984 1.6e-08 66.2 289 27.7
Lju188P3T29 Lonicera japonica HOM05D005720 ORTHO05D006984 3.3e-06 58.5 66 54.5
Actinidia30732 Actinidia chinensis HOM05D005720 ORTHO05D006984 4.3e-06 58.2 171 33.9
MSTRG.8687 Avicennia marina HOM05D005720 ORTHO05D006984 5.6e-06 57.8 132 36.4


User provided reference genes

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