Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Sabra11G0142800 Salix brachista HOM05D006189 ORTHO05D007765 2.6e-208 728.4 356 100.0
Potri.011G157300 Populus trichocarpa HOM05D006189 ORTHO05D007765 3.8e-146 521.9 356 76.1
Manes.14G126200 Manihot esculenta HOM05D006189 ORTHO05D007765 6.7e-127 458.0 360 67.8
GSVIVG01021771001 Vitis vinifera HOM05D006189 ORTHO05D007765 1.1e-126 457.2 357 68.1
QL04p073052 Quercus lobata HOM05D006189 ORTHO05D007765 9.0e-124 447.6 348 67.5
Atru.chr10.686 Acer truncatum HOM05D006189 ORTHO05D007765 1.5e-123 446.8 358 66.8
vmacro03465 Vaccinium macrocarpon HOM05D006189 ORTHO05D007765 5.8e-123 444.9 360 66.9
Dinv06442 Davidia involucrata HOM05D006189 ORTHO05D007765 1.0e-122 444.1 358 67.6
Thecc.06G008600 Theobroma cacao HOM05D006189 ORTHO05D007765 1.7e-122 443.4 356 65.4
CSS0031891 Camellia sinensis var. sinensis HOM05D006189 ORTHO05D007765 2.9e-122 442.6 346 67.6
COL.COLO4_26883 Corchorus olitorius HOM05D006189 ORTHO05D007765 1.1e-121 440.7 354 65.5
CiPaw.09G147800 Carya illinoinensis HOM05D006189 ORTHO05D007765 2.5e-121 439.5 361 65.4
Cfa000769 Carpinus fangiana HOM05D006189 ORTHO05D007765 4.2e-121 438.7 363 64.2
TAR626G0344 Trochodendron aralioides HOM05D006189 ORTHO05D007765 9.3e-121 437.6 346 66.5
Actinidia29243 Actinidia chinensis HOM05D006189 ORTHO05D007765 1.6e-120 436.8 360 65.0
Haze_05946 Corylus avellana HOM05D006189 ORTHO05D007765 1.6e-120 436.8 368 63.3
TWI38G1238 Tripterygium wilfordii HOM05D006189 ORTHO05D007765 2.7e-120 436.0 359 64.3
Rhsim13G0125300 Rhododendron simsii HOM05D006189 ORTHO05D007765 3.5e-120 435.6 360 65.8
Duzib235G1073 Durio zibethinus HOM05D006189 ORTHO05D007765 6.1e-120 434.9 347 65.4
Ciclev10016184m.g Citrus clementina HOM05D006189 ORTHO05D007765 5.1e-119 431.8 343 66.8
RcHm_v2.0_Chr5g0018051 Rosa chinensis HOM05D006189 ORTHO05D007765 1.3e-117 427.2 335 66.6
Gohir.D02G105200 Gossypium hirsutum HOM05D006189 ORTHO05D007765 2.8e-117 426.0 356 62.9
Nn7g37778 Nelumbo nucifera HOM05D006189 ORTHO05D007765 3.7e-117 425.6 345 64.6
Prupe.4G101000 Prunus persica HOM05D006189 ORTHO05D007765 4.8e-117 425.2 335 67.2
Sed0000978 Sechium edule HOM05D006189 ORTHO05D007765 4.8e-117 425.2 357 65.0
ClCG03G008560 Citrullus lanatus HOM05D006189 ORTHO05D007765 6.3e-117 424.9 357 63.3
Eucgr.D01017 Eucalyptus grandis HOM05D006189 ORTHO05D007765 6.3e-117 424.9 366 61.2
FAN21G1916 Fragaria x ananassa HOM05D006189 ORTHO05D007765 1.8e-116 423.3 357 63.3
MELO3C002872.2 Cucumis melo HOM05D006189 ORTHO05D007765 2.4e-116 422.9 352 63.4
FvH4_3g11150 Fragaria vesca HOM05D006189 ORTHO05D007765 6.9e-116 421.4 357 63.3
PGSC0003DMG400028033 Solanum tuberosum HOM05D006189 ORTHO05D007765 6.9e-116 421.4 329 65.3
FAN16G1953 Fragaria x ananassa HOM05D006189 ORTHO05D007765 2.6e-115 419.5 359 61.8
arahy.Tifrunner.gnm1.ann1.HZ123V Arachis hypogaea HOM05D006189 ORTHO05D007765 4.5e-115 418.7 354 61.6
Gorai.005G119400 Gossypium raimondii HOM05D006189 ORTHO05D007765 4.5e-115 418.7 356 61.8
arahy.Tifrunner.gnm1.ann1.4Q5DUA Arachis hypogaea HOM05D006189 ORTHO05D007765 5.9e-115 418.3 353 62.3
Thhalv10025851m.g Eutrema salsugineum HOM05D006189 ORTHO05D007765 5.9e-115 418.3 355 62.8
BcaNung04155 Brassica carinata HOM05D006189 ORTHO05D007765 1.3e-114 417.2 364 61.3
Oeu063153.2 Olea europaea HOM05D006189 ORTHO05D007765 1.3e-114 417.2 352 61.9
MBI18_g27139_MAGBIO Magnolia biondii HOM05D006189 ORTHO05D007765 1.7e-114 416.8 343 62.7
MD10G1243100 Malus domestica HOM05D006189 ORTHO05D007765 1.7e-114 416.8 335 66.3
Sopen02g006700 Solanum pennellii HOM05D006189 ORTHO05D007765 1.7e-114 416.8 329 64.7
Aa31LG6G2850 Aethionema arabicum HOM05D006189 ORTHO05D007765 6.5e-114 414.8 333 64.9
Carub.0007s2069 Capsella rubella HOM05D006189 ORTHO05D007765 8.5e-114 414.5 364 60.7
Nitab4.5_0010673g0010 Nicotiana tabacum HOM05D006189 ORTHO05D007765 1.1e-113 414.1 360 61.4
Sp7g18830 Schrenkiella parvula HOM05D006189 ORTHO05D007765 1.1e-113 414.1 363 61.7
BraA01t01159Z Brassica rapa HOM05D006189 ORTHO05D007765 1.4e-113 413.7 364 61.8
Migut.M01928 Erythranthe guttata HOM05D006189 ORTHO05D007765 1.4e-113 413.7 330 65.2
FAN25G1707 Fragaria x ananassa HOM05D006189 ORTHO05D007765 1.4e-113 413.7 359 61.8
Solyc02g023990.3 Solanum lycopersicum HOM05D006189 ORTHO05D007765 1.4e-113 413.7 329 64.1
C01p14490 Brassica napus HOM05D006189 ORTHO05D007765 1.9e-113 413.3 364 61.5
DCAR_005641 Daucus carota HOM05D006189 ORTHO05D007765 1.9e-113 413.3 330 64.5
Lalb_Chr18g0058331 Lupinus albus HOM05D006189 ORTHO05D007765 1.9e-113 413.3 336 64.3
AL7G33390 Arabidopsis lyrata HOM05D006189 ORTHO05D007765 2.5e-113 412.9 364 61.5
A01p12170 Brassica napus HOM05D006189 ORTHO05D007765 4.2e-113 412.1 364 62.1
BolC1t01404H Brassica oleracea HOM05D006189 ORTHO05D007765 5.5e-113 411.8 364 61.5
CAN.G565.1 Capsicum annuum HOM05D006189 ORTHO05D007765 5.5e-113 411.8 330 64.5
Nitab4.5_0002819g0010 Nicotiana tabacum HOM05D006189 ORTHO05D007765 5.5e-113 411.8 360 61.4
PSO541G1785 Papaver somniferum HOM05D006189 ORTHO05D007765 1.2e-112 410.6 347 63.1
BcaC09g51315 Brassica carinata HOM05D006189 ORTHO05D007765 1.6e-112 410.2 364 61.3
Ca_00927_v3 Cicer arietinum L. HOM05D006189 ORTHO05D007765 2.7e-112 409.5 358 60.9
Phvul.006G123300 Phaseolus vulgaris HOM05D006189 ORTHO05D007765 4.6e-112 408.7 353 61.8
Cc09_g07340 Coffea canephora HOM05D006189 ORTHO05D007765 1.0e-111 407.5 345 62.9
SalBow8G0058 Salvia bowleyana HOM05D006189 ORTHO05D007765 1.0e-111 407.5 325 63.4
SalBow8G0354 Salvia bowleyana HOM05D006189 ORTHO05D007765 1.0e-111 407.5 325 63.4
AT4G20760 Arabidopsis thaliana HOM05D006189 ORTHO05D007765 3.0e-111 406.0 354 61.3
PSO675G7004 Papaver somniferum HOM05D006189 ORTHO05D007765 8.8e-111 404.4 335 63.3
VMungo0540G1817 Vigna mungo HOM05D006189 ORTHO05D007765 2.5e-110 402.9 352 61.6
Glyma.15G135500 Glycine max HOM05D006189 ORTHO05D007765 3.3e-110 402.5 349 61.6
Medtr2g031990 Medicago truncatula HOM05D006189 ORTHO05D007765 3.3e-110 402.5 343 62.1
MSTRG.16306 Avicennia marina HOM05D006189 ORTHO05D007765 4.3e-110 402.1 339 61.9
Lj6g0027485 Lotus japonicus HOM05D006189 ORTHO05D007765 1.7e-109 400.2 352 60.5
HanXRQChr10g0296271 Helianthus annuus HOM05D006189 ORTHO05D007765 3.7e-109 399.1 358 59.8
TPR.G8020 Trifolium pratense HOM05D006189 ORTHO05D007765 4.8e-109 398.7 343 61.5
ECA234G0756 Erigeron canadensis HOM05D006189 ORTHO05D007765 8.2e-109 397.9 318 64.5
Sc24g0002570 Simmondsia chinensis HOM05D006189 ORTHO05D007765 3.1e-108 396.0 337 61.4
EL10Ac9g22332 Beta vulgaris HOM05D006189 ORTHO05D007765 1.1e-105 387.5 332 59.3
Gohir.A03G088500 Gossypium hirsutum HOM05D006189 ORTHO05D007765 1.9e-105 386.7 328 62.2
SGA_v2.0_scaffold1G00293 Striga asiatica HOM05D006189 ORTHO05D007765 2.5e-105 386.3 323 61.9
Lsat_1_v5_gn_5_148401 Lactuca sativa HOM05D006189 ORTHO05D007765 9.4e-105 384.4 357 57.7
Cpa.g.c30210.1 Carica papaya HOM05D006189 ORTHO05D007765 1.8e-103 380.2 305 64.9
Hma1.2p1_1192F.1_g265520 Hydrangea macrophylla HOM05D006189 ORTHO05D007765 2.0e-102 376.7 321 63.9
CsaV3_1G037630 Cucumis sativus L. HOM05D006189 ORTHO05D007765 2.2e-101 373.2 346 59.8
CANSAT35G1316 Cannabis sativa HOM05D006189 ORTHO05D007765 8.2e-101 371.3 351 60.1
arahy.Tifrunner.gnm1.ann1.5RXD5Y Arachis hypogaea HOM05D006189 ORTHO05D007765 1.0e-98 364.4 314 60.5
Glyma.09G029700 Glycine max HOM05D006189 ORTHO05D007765 1.0e-98 364.4 305 61.6
Hund17667 Selenicereus undatus HOM05D006189 ORTHO05D007765 2.2e-98 363.2 320 59.4
SEGI_07893 Sequoiadendron giganteum HOM05D006189 ORTHO05D007765 2.9e-98 362.8 336 56.0
CDE02G4463 Ceratophyllum demersum HOM05D006189 ORTHO05D007765 3.6e-96 355.9 329 58.7
ATR0763G139 Amborella trichopoda HOM05D006189 ORTHO05D007765 4.7e-96 355.5 308 59.7
Os12g0609500 Oryza sativa ssp. japonica HOM05D006189 ORTHO05D007765 1.3e-93 347.4 346 55.8
AUR62027598 Chenopodium quinoa HOM05D006189 ORTHO05D007765 1.7e-93 347.1 305 57.7
AUR62030247 Chenopodium quinoa HOM05D006189 ORTHO05D007765 4.8e-93 345.5 305 57.4
Ah.14g085060 Amaranthus hybridus HOM05D006189 ORTHO05D007765 3.8e-90 335.9 350 53.1
Lj2A337T31 Lonicera japonica HOM05D006189 ORTHO05D007765 2.7e-88 329.7 348 54.6
AagrBONN_evm.TU.Sc2ySwM_228.1434 Anthoceros agrestis HOM05D006189 ORTHO05D007765 1.5e-86 323.9 346 51.2
Mapoly0158s0008 Marchantia polymorpha HOM05D006189 ORTHO05D007765 7.0e-84 315.1 334 49.4
Pp3c10_7720 Physcomitrium patens HOM05D006189 ORTHO05D007765 1.6e-83 313.9 324 51.2
PSO541G6221 Papaver somniferum HOM05D006189 ORTHO05D007765 3.5e-83 312.8 290 59.0
SMO116G0118 Selaginella moellendorffii HOM05D006189 ORTHO05D007765 2.1e-80 303.5 345 47.2
Psat1g164320 Pisum sativum HOM05D006189 ORTHO05D007765 7.5e-78 295.0 276 57.6
Aqoxy1G01513 Aquilegia oxysepala HOM05D006189 ORTHO05D007765 3.6e-72 276.2 331 49.2
Peaxi162Scf00395g00112 Petunia axillaris HOM05D006189 ORTHO05D007765 2.3e-71 273.5 361 46.5
TPR.G21393 Trifolium pratense HOM05D006189 ORTHO05D007765 3.0e-71 273.1 253 56.9
CARHR227300 Cardamine hirsuta HOM05D006189 ORTHO05D007765 1.6e-67 260.8 223 60.5
arahy.Tifrunner.gnm1.ann1.FHXA43 Arachis hypogaea HOM05D006189 ORTHO05D007765 4.6e-67 259.2 355 44.8
Zm00001eb031410 Zea mays HOM05D006189 ORTHO05D007765 2.6e-62 243.4 203 64.0
HPP92_015693 Vanilla planifolia HOM05D006189 ORTHO05D007765 4.6e-59 232.6 211 57.8
Hma1.2p1_1192F.1_g265540 Hydrangea macrophylla HOM05D006189 ORTHO05D007765 6.8e-55 218.8 195 58.5
unitig_92.g28182 Utricularia gibba HOM05D006189 ORTHO05D007765 9.8e-54 214.9 173 65.9
MCO04G545 Micromonas commoda HOM05D006189 ORTHO05D007765 5.4e-52 209.1 321 38.3
CDE02G2479 Ceratophyllum demersum HOM05D006189 ORTHO05D007765 8.4e-45 185.3 186 54.3
PRCOL_00006144 Prasinoderma coloniale HOM05D006189 ORTHO05D007765 7.8e-43 178.7 323 35.9
HPP92_015692 Vanilla planifolia HOM05D006189 ORTHO05D007765 7.1e-36 155.6 113 68.1
TPR.G8023 Trifolium pratense HOM05D006189 ORTHO05D007765 8.1e-24 115.5 111 60.4
MCO09G279 Micromonas commoda HOM05D006189 ORTHO05D007765 3.2e-20 103.6 225 35.1
QL04p073045 Quercus lobata HOM05D006189 ORTHO05D007765 6.0e-19 99.4 59 81.4
MCO08G164 Micromonas commoda HOM05D006189 ORTHO05D007765 4.0e-15 86.7 339 25.4
PRCOL_00004206 Prasinoderma coloniale HOM05D006189 ORTHO05D007765 1.7e-13 81.3 238 30.7
CDE02G4223 Ceratophyllum demersum HOM05D006189 ORTHO05D007765 3.2e-12 77.0 52 65.4
Cfa026914 Carpinus fangiana HOM05D000326 ORTHO05D125651 3.3e-09 67.0 181 30.9
MCO03G468 Micromonas commoda HOM05D006189 ORTHO05D007765 3.3e-09 67.0 185 28.6
Cfa026333 Carpinus fangiana HOM05D006189 ORTHO05D007765 2.8e-08 63.9 181 29.8
Actinidia17962 Actinidia chinensis HOM05D001208 ORTHO05D001593 4.8e-08 63.2 182 30.2
CDE02G4483 Ceratophyllum demersum HOM05D000182 ORTHO05D000112 6.3e-08 62.8 183 24.0
Glyma.07G074400 Glycine max HOM05D000402 ORTHO05D000263 2.4e-07 60.8 181 28.2
Haze_05112 Corylus avellana HOM05D000182 ORTHO05D000112 4.1e-07 60.1 182 26.9
THA.LOC104804113 Tarenaya hassleriana HOM05D000402 ORTHO05D000263 4.1e-07 60.1 172 30.8
AL4G46670 Arabidopsis lyrata HOM05D000182 ORTHO05D000112 5.3e-07 59.7 182 26.9
MSTRG.20810 Avicennia marina HOM05D000402 ORTHO05D000263 5.3e-07 59.7 158 28.5
AUR62039097 Chenopodium quinoa HOM05D000182 ORTHO05D000112 5.3e-07 59.7 217 25.8
Aa31LG3G7510 Aethionema arabicum HOM05D000402 ORTHO05D000263 6.9e-07 59.3 163 31.3
Cre12.g549852 Chlamydomonas reinhardtii HOM05D006189 ORTHO05D007765 9.0e-07 58.9 201 26.9
Hma1.2p1_0902F.1_g234870 Hydrangea macrophylla HOM05D000182 ORTHO05D000112 1.2e-06 58.5 181 25.4
Phvul.010G094800 Phaseolus vulgaris HOM05D000402 ORTHO05D000263 1.2e-06 58.5 177 28.8
SEGI_15051 Sequoiadendron giganteum HOM05D000402 ORTHO05D000263 1.2e-06 58.5 185 28.1
Phvul.010G094900 Phaseolus vulgaris HOM05D000402 ORTHO05D000263 1.5e-06 58.2 175 29.1
SEGI_38145 Sequoiadendron giganteum HOM05D000402 ORTHO05D000263 1.5e-06 58.2 306 25.2
AT2G47130 Arabidopsis thaliana HOM05D000182 ORTHO05D000112 2.0e-06 57.8 182 26.4
BcaC07g40442 Brassica carinata HOM05D000402 ORTHO05D000263 2.0e-06 57.8 160 28.8
PRCOL_00002389 Prasinoderma coloniale HOM05D006189 ORTHO05D007765 2.0e-06 57.8 183 27.9
PGSC0003DMG400011602 Solanum tuberosum HOM05D001208 ORTHO05D001593 2.0e-06 57.8 184 30.4
Aa31LG11G1660 Aethionema arabicum HOM05D000402 ORTHO05D000263 2.6e-06 57.4 182 30.2
ECA240G1346 Erigeron canadensis HOM05D000182 ORTHO05D000112 2.6e-06 57.4 197 27.4
SMO367G1043 Selaginella moellendorffii HOM05D000402 ORTHO05D000263 2.6e-06 57.4 165 24.8
SEGI_24635 Sequoiadendron giganteum HOM05D000402 ORTHO05D000263 2.6e-06 57.4 156 28.8
SMO347G0650 Selaginella moellendorffii HOM05D000402 ORTHO05D000263 3.4e-06 57.0 137 31.4
Solyc02g092060.1 Solanum lycopersicum HOM05D002673 ORTHO05D002766 3.4e-06 57.0 184 26.1
ClCG11G004250 Citrullus lanatus HOM05D002673 ORTHO05D002766 4.5e-06 56.6 182 26.4
Psat7g142840 Pisum sativum HOM05D000182 ORTHO05D000112 4.5e-06 56.6 192 28.6
PGSC0003DMG400021430 Solanum tuberosum HOM05D002673 ORTHO05D002766 4.5e-06 56.6 184 26.1
Actinidia19447 Actinidia chinensis HOM05D000182 ORTHO05D000112 5.9e-06 56.2 190 24.2
CBR_g38759 Chara braunii HOM05D000402 ORTHO05D000263 5.9e-06 56.2 148 29.7
Peaxi162Scf00397g00519 Petunia axillaris HOM05D000402 ORTHO05D000263 5.9e-06 56.2 146 27.4
Potri.013G127700 Populus trichocarpa HOM05D000402 ORTHO05D000263 5.9e-06 56.2 156 25.0
Rhsim04G0156000 Rhododendron simsii HOM05D000252 ORTHO05D000307 5.9e-06 56.2 208 26.9
RcHm_v2.0_Chr7g0197431 Rosa chinensis HOM05D000252 ORTHO05D000307 5.9e-06 56.2 195 26.7
Sopen12g034840 Solanum pennellii HOM05D000674 ORTHO05D001370 5.9e-06 56.2 183 30.1
PGSC0003DMG400023847 Solanum tuberosum HOM05D001208 ORTHO05D001593 5.9e-06 56.2 184 29.9
TAR062G0001 Trochodendron aralioides HOM05D000182 ORTHO05D000112 5.9e-06 56.2 201 23.9
Ah.11g045750 Amaranthus hybridus HOM05D000182 ORTHO05D000112 7.6e-06 55.8 185 26.5
ECA240G1060 Erigeron canadensis HOM05D000182 ORTHO05D000112 7.6e-06 55.8 193 29.5
QL07p011686 Quercus lobata HOM05D001208 ORTHO05D001593 7.6e-06 55.8 185 31.4
Sopen12g023390 Solanum pennellii HOM05D001208 ORTHO05D001593 7.6e-06 55.8 184 29.3
PGSC0003DMG400007169 Solanum tuberosum HOM05D001208 ORTHO05D001593 7.6e-06 55.8 184 28.3
ATR0772G037 Amborella trichopoda HOM05D000182 ORTHO05D000112 1.0e-05 55.5 188 26.6
arahy.Tifrunner.gnm1.ann1.PT4YLR Arachis hypogaea HOM05D000402 ORTHO05D000263 1.0e-05 55.5 169 26.6
BcaC01g06066 Brassica carinata HOM05D000402 ORTHO05D000263 1.0e-05 55.5 182 29.1
A03p16400 Brassica napus HOM05D000402 ORTHO05D000263 1.0e-05 55.5 182 29.1
C03p19280 Brassica napus HOM05D000402 ORTHO05D000263 1.0e-05 55.5 182 29.1
BolC3t14314H Brassica oleracea HOM05D000402 ORTHO05D000263 1.0e-05 55.5 182 29.1
BraA03t10930Z Brassica rapa HOM05D000402 ORTHO05D000263 1.0e-05 55.5 182 29.1
Carub.0005s2643 Capsella rubella HOM05D000402 ORTHO05D000263 1.0e-05 55.5 211 25.6
Thhalv10001592m.g Eutrema salsugineum HOM05D000182 ORTHO05D000112 1.0e-05 55.5 191 24.6
Lsat_1_v5_gn_4_36541 Lactuca sativa HOM05D000402 ORTHO05D000263 1.0e-05 55.5 176 28.4
Nitab4.5_0001524g0070 Nicotiana tabacum HOM05D000402 ORTHO05D000263 1.0e-05 55.5 169 26.6


User provided reference genes

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