Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Sabra11G0142700 Salix brachista HOM05D005284 ORTHO05D006609 5.4e-161 570.9 272 100.0
Potri.011G157500 Populus trichocarpa HOM05D005284 ORTHO05D006609 5.8e-147 524.2 267 93.3
Manes.14G126000 Manihot esculenta HOM05D005284 ORTHO05D006609 2.4e-124 449.1 248 86.3
TWI38G1381 Tripterygium wilfordii HOM05D005284 ORTHO05D006609 1.2e-115 420.2 236 82.2
Duzib235G1425 Durio zibethinus HOM05D005284 ORTHO05D006609 5.1e-111 404.8 254 76.8
COL.COLO4_26880 Corchorus olitorius HOM05D005284 ORTHO05D006609 1.9e-110 402.9 248 78.6
Gohir.D10G005900 Gossypium hirsutum HOM05D005284 ORTHO05D006609 9.7e-110 400.6 243 77.4
Gorai.011G006700 Gossypium raimondii HOM05D005284 ORTHO05D006609 2.2e-109 399.4 243 77.0
Thecc.06G009000 Theobroma cacao HOM05D005284 ORTHO05D006609 2.2e-109 399.4 245 78.4
Ciclev10016195m.g Citrus clementina HOM05D005284 ORTHO05D006609 2.8e-109 399.1 239 77.0
Gohir.A10G005900 Gossypium hirsutum HOM05D005284 ORTHO05D006609 1.4e-108 396.7 243 77.0
Atru.chr10.695 Acer truncatum HOM05D005284 ORTHO05D006609 6.9e-108 394.4 242 75.6
CiPaw.09G147600 Carya illinoinensis HOM05D005284 ORTHO05D006609 1.2e-107 393.7 235 76.6
DCAR_000834 Daucus carota HOM05D005284 ORTHO05D006609 4.5e-107 391.7 232 76.7
Cpa.g.sc489.2 Carica papaya HOM05D005284 ORTHO05D006609 1.0e-106 390.6 238 77.7
Dinv04290 Davidia involucrata HOM05D005284 ORTHO05D006609 2.2e-106 389.4 235 76.6
CANSAT78G1346 Cannabis sativa HOM05D005284 ORTHO05D006609 5.0e-106 388.3 237 75.9
THA.LOC104812070 Tarenaya hassleriana HOM05D005284 ORTHO05D006609 1.1e-105 387.1 283 68.6
Prupe.4G100600 Prunus persica HOM05D005284 ORTHO05D006609 3.2e-105 385.6 238 76.1
Actinidia29265 Actinidia chinensis HOM05D005284 ORTHO05D006609 4.2e-105 385.2 237 74.7
Cfa000771 Carpinus fangiana HOM05D005284 ORTHO05D006609 4.2e-105 385.2 238 73.9
HanXRQChr12g0359761 Helianthus annuus HOM05D005284 ORTHO05D006609 7.2e-105 384.4 238 73.9
MELO3C007049.2 Cucumis melo HOM05D005284 ORTHO05D006609 2.7e-104 382.5 235 74.0
CsaV3_6G052590 Cucumis sativus L. HOM05D005284 ORTHO05D006609 2.7e-104 382.5 235 73.6
Lsat_1_v5_gn_5_75320 Lactuca sativa HOM05D005284 ORTHO05D006609 6.1e-104 381.3 240 73.8
CARHR178630 Cardamine hirsuta HOM05D005284 ORTHO05D006609 1.0e-103 380.6 239 76.2
MD10G1243300 Malus domestica HOM05D005284 ORTHO05D006609 3.0e-103 379.0 238 74.4
TAR626G0222 Trochodendron aralioides HOM05D005284 ORTHO05D006609 5.1e-103 378.3 238 73.9
BcaC04g21829 Brassica carinata HOM05D005284 ORTHO05D006609 2.5e-102 375.9 238 75.6
Rhsim13G0125000 Rhododendron simsii HOM05D005284 ORTHO05D006609 2.5e-102 375.9 235 74.5
vmacro03466 Vaccinium macrocarpon HOM05D005284 ORTHO05D006609 2.5e-102 375.9 237 73.0
Nn7g37791 Nelumbo nucifera HOM05D005284 ORTHO05D006609 3.3e-102 375.6 237 74.3
Cc08_g07170 Coffea canephora HOM05D005284 ORTHO05D006609 4.3e-102 375.2 235 71.5
Eucgr.D01014 Eucalyptus grandis HOM05D005284 ORTHO05D006609 4.3e-102 375.2 238 74.8
EL10Ac9g22329 Beta vulgaris HOM05D005284 ORTHO05D006609 5.7e-102 374.8 238 73.5
FvH4_3g11170 Fragaria vesca HOM05D005284 ORTHO05D006609 5.7e-102 374.8 235 74.5
RcHm_v2.0_Chr5g0018081 Rosa chinensis HOM05D005284 ORTHO05D006609 5.7e-102 374.8 235 74.0
Sed0002797 Sechium edule HOM05D005284 ORTHO05D006609 7.4e-102 374.4 235 72.3
Aa31LG9G8740 Aethionema arabicum HOM05D005284 ORTHO05D006609 9.7e-102 374.0 239 76.2
QL05p064527 Quercus lobata HOM05D005284 ORTHO05D006609 1.3e-101 373.6 238 73.1
Sopen02g006280 Solanum pennellii HOM05D005284 ORTHO05D006609 1.3e-101 373.6 237 73.0
Sp2g09280 Schrenkiella parvula HOM05D005284 ORTHO05D006609 1.7e-101 373.2 237 75.9
BcaB07g30944 Brassica carinata HOM05D005284 ORTHO05D006609 2.8e-101 372.5 238 75.2
Thhalv10000956m.g Eutrema salsugineum HOM05D005284 ORTHO05D006609 3.7e-101 372.1 240 75.0
C09p26950 Brassica napus HOM05D005284 ORTHO05D006609 4.8e-101 371.7 239 75.3
BolC9t55580H Brassica oleracea HOM05D005284 ORTHO05D006609 4.8e-101 371.7 239 75.3
Lalb_Chr12g0208701 Lupinus albus HOM05D005284 ORTHO05D006609 4.8e-101 371.7 232 74.1
Lj4g0006881 Lotus japonicus HOM05D005284 ORTHO05D006609 6.3e-101 371.3 237 73.8
Carub.0008s0404 Capsella rubella HOM05D005284 ORTHO05D006609 1.8e-100 369.8 239 74.1
A06p47190 Brassica napus HOM05D005284 ORTHO05D006609 3.1e-100 369.0 249 72.3
BraA06t27590Z Brassica rapa HOM05D005284 ORTHO05D006609 3.1e-100 369.0 249 72.3
Medtr4g094452 Medicago truncatula HOM05D005284 ORTHO05D006609 4.1e-100 368.6 235 71.5
Ah.01g003600 Amaranthus hybridus HOM05D005284 ORTHO05D006609 5.3e-100 368.2 238 72.3
A09p21140 Brassica napus HOM05D005284 ORTHO05D006609 6.9e-100 367.9 239 74.9
BraA09t37720Z Brassica rapa HOM05D005284 ORTHO05D006609 6.9e-100 367.9 239 74.9
BcaC06g31615 Brassica carinata HOM05D005284 ORTHO05D006609 9.1e-100 367.5 234 75.6
MD05G1265300 Malus domestica HOM05D005284 ORTHO05D006609 9.1e-100 367.5 238 72.3
CDE02G0074 Ceratophyllum demersum HOM05D005284 ORTHO05D006609 1.5e-99 366.7 239 69.9
Ca_18306_v3 Cicer arietinum L. HOM05D005284 ORTHO05D006609 2.0e-99 366.3 233 72.1
Glyma.08G079300 Glycine max HOM05D005284 ORTHO05D006609 4.5e-99 365.2 237 72.2
Migut.M01924 Erythranthe guttata HOM05D005284 ORTHO05D006609 5.9e-99 364.8 237 69.6
AL8G15400 Arabidopsis lyrata HOM05D005284 ORTHO05D006609 1.0e-98 364.0 238 74.4
arahy.Tifrunner.gnm1.ann1.06Y4PY Arachis hypogaea HOM05D005284 ORTHO05D006609 1.0e-98 364.0 236 73.7
MSTRG.7559 Avicennia marina HOM05D005284 ORTHO05D006609 1.0e-98 364.0 237 70.5
CAN.G39.30 Capsicum annuum HOM05D005284 ORTHO05D006609 1.0e-98 364.0 237 70.0
CDE05G2614 Ceratophyllum demersum HOM05D005284 ORTHO05D006609 2.9e-98 362.5 247 68.8
BcaC06g34553 Brassica carinata HOM05D005284 ORTHO05D006609 3.8e-98 362.1 238 73.9
C07p27240 Brassica napus HOM05D005284 ORTHO05D006609 3.8e-98 362.1 238 73.9
BolC7t43252H Brassica oleracea HOM05D005284 ORTHO05D006609 3.8e-98 362.1 265 67.9
Phvul.002G201500 Phaseolus vulgaris HOM05D005284 ORTHO05D006609 3.8e-98 362.1 232 72.0
Psat7g094280 Pisum sativum HOM05D005284 ORTHO05D006609 5.0e-98 361.7 265 64.2
Glyma.05G124100 Glycine max HOM05D005284 ORTHO05D006609 5.5e-97 358.2 237 70.5
PSO541G1959 Papaver somniferum HOM05D005284 ORTHO05D006609 6.1e-96 354.8 241 69.3
PSO675G4367 Papaver somniferum HOM05D005284 ORTHO05D006609 6.1e-96 354.8 241 69.3
VMungo0251G0080 Vigna mungo HOM05D005284 ORTHO05D006609 1.4e-95 353.6 232 70.7
ECA234G4512 Erigeron canadensis HOM05D005284 ORTHO05D006609 1.5e-94 350.1 217 73.3
ATR0763G041 Amborella trichopoda HOM05D005284 ORTHO05D006609 2.2e-93 346.3 241 68.9
Aqoxy1G01504 Aquilegia oxysepala HOM05D005284 ORTHO05D006609 1.1e-92 344.0 240 65.8
Aqoxy1G01508 Aquilegia oxysepala HOM05D005284 ORTHO05D006609 1.1e-92 344.0 240 65.8
Os03g0780900 Oryza sativa ssp. japonica HOM05D005284 ORTHO05D006609 2.9e-90 335.9 270 60.0
SEGI_24201 Sequoiadendron giganteum HOM05D005284 ORTHO05D006609 5.0e-90 335.1 235 64.7
Lj2C336G9 Lonicera japonica HOM05D005284 ORTHO05D006609 6.5e-90 334.7 235 67.7
SalBow3G1375 Salvia bowleyana HOM05D005284 ORTHO05D006609 2.5e-89 332.8 269 59.9
Sc04g0004240 Simmondsia chinensis HOM05D005284 ORTHO05D006609 4.2e-89 332.0 194 78.9
HPP92_000943 Vanilla planifolia HOM05D005284 ORTHO05D006609 9.4e-89 330.9 251 62.9
SalBow8G0467 Salvia bowleyana HOM05D005284 ORTHO05D006609 1.2e-88 330.5 269 59.5
Oeu000506.1 Olea europaea HOM05D005284 ORTHO05D006609 2.1e-88 329.7 307 54.4
Nitab4.5_0000607g0120 Nicotiana tabacum HOM05D005284 ORTHO05D006609 8.0e-88 327.8 349 49.6
Nitab4.5_0000100g0010 Nicotiana tabacum HOM05D005284 ORTHO05D006609 2.0e-86 323.2 358 48.6
AT5G44450 Arabidopsis thaliana HOM05D005284 ORTHO05D006609 1.4e-84 317.0 226 70.8
TPR.G23781 Trifolium pratense HOM05D005284 ORTHO05D006609 2.5e-81 306.2 241 60.6
PGR083G0243 Punica granatum HOM05D005284 ORTHO05D006609 5.5e-81 305.1 216 67.1
MBI18_g27137_MAGBIO Magnolia biondii HOM05D005284 ORTHO05D006609 7.2e-81 304.7 278 56.8
Peaxi162Scf00155g00513 Petunia axillaris HOM05D005284 ORTHO05D006609 1.2e-80 303.9 262 58.4
SMO364G0300 Selaginella moellendorffii HOM05D005284 ORTHO05D006609 1.8e-79 300.1 240 57.9
FAN21G1306 Fragaria x ananassa HOM05D005284 ORTHO05D006609 3.4e-78 295.8 235 62.1
SGA_v2.0_scaffold1G00293 Striga asiatica HOM05D006189 ORTHO05D007765 3.4e-78 295.8 214 65.4
AUR62042202 Chenopodium quinoa HOM05D005284 ORTHO05D006609 5.7e-78 295.0 228 62.3
FAN25G2940 Fragaria x ananassa HOM05D005284 ORTHO05D006609 4.8e-77 292.0 234 61.5
unitig_748.g7349 Utricularia gibba HOM05D005284 ORTHO05D006609 6.3e-77 291.6 242 59.9
FAN16G1000 Fragaria x ananassa HOM05D005284 ORTHO05D006609 8.3e-77 291.2 234 60.3
Solyc02g021700.4 Solanum lycopersicum HOM05D005284 ORTHO05D006609 3.1e-76 289.3 187 71.7
AUR62033057 Chenopodium quinoa HOM05D005284 ORTHO05D006609 6.5e-74 281.6 188 69.1
Mapoly0083s0001 Marchantia polymorpha HOM05D005284 ORTHO05D006609 2.1e-72 276.6 240 56.2
ClCG01G025350 Citrullus lanatus HOM05D005284 ORTHO05D006609 1.4e-71 273.9 230 59.6
Zm00001eb059610 Zea mays HOM05D005284 ORTHO05D006609 1.1e-65 254.2 259 51.4
GSVIVG01021778001 Vitis vinifera HOM05D005284 ORTHO05D006609 2.5e-65 253.1 144 79.2
CBR_g19259 Chara braunii HOM05D005284 ORTHO05D006609 1.7e-61 240.4 247 49.8
MCO11G684 Micromonas commoda HOM05D005284 ORTHO05D006609 3.3e-57 226.1 224 47.8
Thecc.06G010000 Theobroma cacao HOM05D005284 ORTHO05D006609 3.3e-57 226.1 194 59.8
Cre06.g274400 Chlamydomonas reinhardtii HOM05D005284 ORTHO05D006609 7.3e-57 224.9 236 46.2
PRCOL_00002523 Prasinoderma coloniale HOM05D005284 ORTHO05D006609 5.2e-55 218.8 248 46.0
AagrBONN_evm.TU.Sc2ySwM_344.3509 Anthoceros agrestis HOM05D005284 ORTHO05D006609 6.8e-55 218.4 200 56.0
Dinv04294 Davidia involucrata HOM05D005284 ORTHO05D006609 5.4e-44 182.2 102 79.4
Hma1.2p1_0721F.1_g208670 Hydrangea macrophylla HOM05D005284 ORTHO05D006609 2.5e-41 173.3 120 65.8
Hma1.2p1_0721F.1_g208680 Hydrangea macrophylla HOM05D005284 ORTHO05D006609 9.5e-41 171.4 111 70.3
CARHR114890 Cardamine hirsuta HOM05D005284 ORTHO05D006609 2.2e-37 160.2 98 76.5
Thecc.06G009200 Theobroma cacao HOM05D005284 ORTHO05D006609 2.8e-32 143.3 125 61.6
Haze_05942 Corylus avellana HOM05D005284 ORTHO05D006609 3.8e-29 132.9 118 55.1
Thecc.06G009800 Theobroma cacao HOM05D005284 ORTHO05D006609 8.4e-29 131.7 95 69.5
Cfa017779 Carpinus fangiana HOM05D005284 ORTHO05D006609 1.4e-28 131.0 94 62.8
Aa31LG2G17800 Aethionema arabicum HOM05D005284 ORTHO05D006609 2.4e-28 130.2 89 70.8
Thecc.06G009400 Theobroma cacao HOM05D005284 ORTHO05D006609 3.2e-28 129.8 113 60.2
PGSC0003DMG400009806 Solanum tuberosum HOM05D005284 ORTHO05D006609 5.1e-26 122.5 93 62.4
Dinv09223 Davidia involucrata HOM05D005284 ORTHO05D006609 2.8e-24 116.7 91 62.6
Lalb_Chr13g0291531 Lupinus albus HOM05D005284 ORTHO05D006609 1.2e-22 111.3 109 49.5
Dinv23919 Davidia involucrata HOM05D005284 ORTHO05D006609 3.4e-22 109.8 89 59.6
GSVIVG01037925001 Vitis vinifera HOM05D005284 ORTHO05D006609 1.7e-21 107.5 75 69.3
PGSC0003DMG400015105 Solanum tuberosum HOM05D005284 ORTHO05D006609 1.2e-19 101.3 55 74.5
BcaB07g30524 Brassica carinata HOM05D005284 ORTHO05D006609 1.6e-19 100.9 76 64.5
CSS0000752 Camellia sinensis var. sinensis HOM05D005284 ORTHO05D006609 1.6e-19 100.9 52 84.6
Pp3c22_8670 Physcomitrium patens HOM05D005284 ORTHO05D006609 6.0e-19 99.0 112 44.6
vmacro21870 Vaccinium macrocarpon HOM05D005284 ORTHO05D006609 8.1e-16 88.6 50 78.0
CSS0004293 Camellia sinensis var. sinensis HOM05D005284 ORTHO05D006609 9.3e-12 75.1 38 78.9
Migut.D00154 Erythranthe guttata HOM05D005284 ORTHO05D006609 1.6e-11 74.3 67 56.7
Glyma.04G136150 Glycine max HOM05D005284 ORTHO05D006609 3.5e-11 73.2 36 77.8
Sabra16G0312400 Salix brachista HOM05D005284 ORTHO05D006609 4.3e-09 66.2 34 88.2
A07p10120 Brassica napus HOM05D005284 ORTHO05D024396 2.4e-07 60.5 33 69.7
BraA07t28805Z Brassica rapa HOM05D005284 ORTHO05D024396 2.4e-07 60.5 33 69.7
Prupe.4G100800 Prunus persica HOM05D005284 ORTHO05D006609 1.5e-06 57.8 53 49.1


User provided reference genes

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