Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Sabra11G0142300 Salix brachista HOM05D005212 ORTHO05D006353 8.4e-76 287.0 147 100.0
Potri.001G461100 Populus trichocarpa HOM05D005212 ORTHO05D006353 9.4e-35 150.6 152 57.9
Sabra16G0312600 Salix brachista HOM05D005212 ORTHO05D006353 2.7e-34 149.1 153 57.5
FAN12G1848 Fragaria x ananassa HOM05D005212 ORTHO05D006353 1.1e-30 137.1 168 49.4
Gohir.D09G202000 Gossypium hirsutum HOM05D005212 ORTHO05D006353 1.4e-30 136.7 154 50.6
Gohir.A09G208525 Gossypium hirsutum HOM05D005212 ORTHO05D006353 2.4e-30 136.0 154 50.0
RcHm_v2.0_Chr3g0448371 Rosa chinensis HOM05D005212 ORTHO05D006353 3.1e-30 135.6 165 49.7
FvH4_4g34100 Fragaria vesca HOM05D005212 ORTHO05D006353 5.3e-30 134.8 162 50.0
Gorai.006G225800 Gossypium raimondii HOM05D005212 ORTHO05D006353 5.3e-30 134.8 154 49.4
RcHm_v2.0_Chr4g0443611 Rosa chinensis HOM05D005212 ORTHO05D006353 5.3e-30 134.8 166 48.2
Duzib268G0887 Durio zibethinus HOM05D005212 ORTHO05D006353 7.0e-30 134.4 154 49.4
Duzib151G1103 Durio zibethinus HOM05D005212 ORTHO05D006353 1.2e-29 133.7 154 50.0
Thecc.04G190200 Theobroma cacao HOM05D005212 ORTHO05D006353 1.2e-29 133.7 154 49.4
GSVIVG01011709001 Vitis vinifera HOM05D005212 ORTHO05D006353 1.2e-29 133.7 163 46.0
Gohir.D13G128200 Gossypium hirsutum HOM05D005212 ORTHO05D006353 2.7e-29 132.5 154 48.7
Gorai.013G143600 Gossypium raimondii HOM05D005212 ORTHO05D006353 2.7e-29 132.5 154 48.7
FAN07G0183 Fragaria x ananassa HOM05D005212 ORTHO05D006353 5.9e-29 131.3 102 65.7
FAN17G0532 Fragaria x ananassa HOM05D005212 ORTHO05D006353 1.0e-28 130.6 103 64.1
Dinv28041 Davidia involucrata HOM05D005212 ORTHO05D006353 1.7e-28 129.8 161 44.7
TWI60G0083 Tripterygium wilfordii HOM05D005212 ORTHO05D006353 2.9e-28 129.0 156 48.1
Gohir.A13G124600 Gossypium hirsutum HOM05D005212 ORTHO05D006353 6.5e-28 127.9 154 48.1
Manes.15G130900 Manihot esculenta HOM05D005212 ORTHO05D006353 6.5e-28 127.9 168 44.0
Prupe.1G329700 Prunus persica HOM05D005212 ORTHO05D006353 6.5e-28 127.9 161 48.4
FAN22G0397 Fragaria x ananassa HOM05D005212 ORTHO05D006353 1.1e-27 127.1 103 62.1
Nn3g18288 Nelumbo nucifera HOM05D005212 ORTHO05D006353 1.1e-27 127.1 161 47.8
GSVIVG01023834001 Vitis vinifera HOM05D005212 ORTHO05D006353 1.5e-27 126.7 164 46.3
CiPaw.05G194300 Carya illinoinensis HOM05D005212 ORTHO05D006353 5.5e-27 124.8 161 46.0
Nitab4.5_0009115g0010 Nicotiana tabacum HOM05D005212 ORTHO05D006353 5.5e-27 124.8 154 48.1
Prupe.8G002300 Prunus persica HOM05D005212 ORTHO05D006353 5.5e-27 124.8 153 50.3
SGA_v2.0_scaffold39G15210 Striga asiatica HOM05D005212 ORTHO05D006353 5.5e-27 124.8 149 48.3
QL03p033836 Quercus lobata HOM05D005212 ORTHO05D006353 7.2e-27 124.4 161 44.1
PGR102G0858 Punica granatum HOM05D005212 ORTHO05D006353 9.4e-27 124.0 162 46.3
Migut.E00446 Erythranthe guttata HOM05D005212 ORTHO05D006353 1.6e-26 123.2 159 45.3
HanXRQChr08g0212231 Helianthus annuus HOM05D005212 ORTHO05D006353 2.1e-26 122.9 160 44.4
THA.LOC104816387 Tarenaya hassleriana HOM05D005212 ORTHO05D006353 3.6e-26 122.1 159 47.2
Aqoxy7G01425 Aquilegia oxysepala HOM05D005212 ORTHO05D006353 6.1e-26 121.3 103 64.1
Atru.chr12.1198 Acer truncatum HOM05D005212 ORTHO05D006353 8.0e-26 120.9 157 47.8
vmacro10659 Vaccinium macrocarpon HOM05D005212 ORTHO05D006353 8.0e-26 120.9 159 44.7
Ah.11g044490 Amaranthus hybridus HOM05D005212 ORTHO05D006353 1.0e-25 120.6 167 43.7
MSTRG.13603 Avicennia marina HOM05D005212 ORTHO05D006353 1.0e-25 120.6 78 69.2
Hund05206 Selenicereus undatus HOM05D005212 ORTHO05D006353 1.8e-25 119.8 160 46.9
EL10Ac9g21945 Beta vulgaris HOM05D005212 ORTHO05D006353 2.3e-25 119.4 164 43.3
CiPaw.06G048200 Carya illinoinensis HOM05D005212 ORTHO05D006353 2.3e-25 119.4 149 47.0
Lj3C867T4 Lonicera japonica HOM05D005212 ORTHO05D006353 2.3e-25 119.4 160 43.8
Sed0020748 Sechium edule HOM05D005212 ORTHO05D006353 2.3e-25 119.4 156 43.6
Sc10g0005560 Simmondsia chinensis HOM05D005212 ORTHO05D006353 2.3e-25 119.4 78 67.9
Peaxi162Scf00723g00423 Petunia axillaris HOM05D005212 ORTHO05D006353 3.0e-25 119.0 162 43.8
CANSAT01G1481 Cannabis sativa HOM05D005212 ORTHO05D006353 5.2e-25 118.2 153 44.4
MD16G1023100 Malus domestica HOM05D005212 ORTHO05D006353 6.8e-25 117.9 104 53.8
CAN.G458.6 Capsicum annuum HOM05D005212 ORTHO05D006353 8.8e-25 117.5 78 65.4
Lalb_Chr07g0187701 Lupinus albus HOM05D005212 ORTHO05D006353 1.2e-24 117.1 78 67.9
Manes.17G080300 Manihot esculenta HOM05D005212 ORTHO05D006353 1.2e-24 117.1 158 48.1
ClCG01G006340 Citrullus lanatus HOM05D005212 ORTHO05D006353 1.5e-24 116.7 150 45.3
Ciclev10028815m.g Citrus clementina HOM05D005212 ORTHO05D006353 1.5e-24 116.7 165 42.4
Cc04_g08860 Coffea canephora HOM05D005212 ORTHO05D006353 1.5e-24 116.7 72 70.8
Solyc04g007850.3 Solanum lycopersicum HOM05D005212 ORTHO05D006353 1.5e-24 116.7 70 71.4
Sopen04g002980 Solanum pennellii HOM05D005212 ORTHO05D006353 1.5e-24 116.7 70 71.4
AUR62008760 Chenopodium quinoa HOM05D005212 ORTHO05D006353 2.0e-24 116.3 163 42.9
Hma1.2p1_0060F.1_g032750 Hydrangea macrophylla HOM05D005212 ORTHO05D006353 2.0e-24 116.3 143 46.9
Lj4g0012207 Lotus japonicus HOM05D005212 ORTHO05D006353 2.0e-24 116.3 70 74.3
Thhalv10014438m.g Eutrema salsugineum HOM05D005212 ORTHO05D006353 2.6e-24 115.9 72 73.6
Eucgr.H01942 Eucalyptus grandis HOM05D005212 ORTHO05D006353 3.4e-24 115.5 78 69.2
PGSC0003DMG400029477 Solanum tuberosum HOM05D005212 ORTHO05D006353 3.4e-24 115.5 70 70.0
Thhalv10015472m.g Eutrema salsugineum HOM05D005212 ORTHO05D006353 4.4e-24 115.2 72 73.6
HanXRQChr12g0363921 Helianthus annuus HOM05D005212 ORTHO05D006353 7.5e-24 114.4 162 40.7
MELO3C005296.2 Cucumis melo HOM05D005212 ORTHO05D006353 1.7e-23 113.2 154 42.9
Dinv36246 Davidia involucrata HOM05D005212 ORTHO05D006353 1.7e-23 113.2 151 43.0
CSS0012951 Camellia sinensis var. sinensis HOM05D005212 ORTHO05D006353 2.8e-23 112.5 153 43.8
ECA233G1697 Erigeron canadensis HOM05D005212 ORTHO05D006353 3.7e-23 112.1 168 43.5
Ca_24783_v3 Cicer arietinum L. HOM05D005212 ORTHO05D006353 6.3e-23 111.3 78 62.8
Ciclev10017606m.g Citrus clementina HOM05D005212 ORTHO05D006353 6.3e-23 111.3 97 56.7
Psat7g082520 Pisum sativum HOM05D005212 ORTHO05D006353 6.3e-23 111.3 78 62.8
TPR.G5141 Trifolium pratense HOM05D005212 ORTHO05D006353 6.3e-23 111.3 78 61.5
Ca_01441_v3 Cicer arietinum L. HOM05D005212 ORTHO05D006353 8.3e-23 110.9 70 70.0
CsaV3_5G028340 Cucumis sativus L. HOM05D005212 ORTHO05D006353 8.3e-23 110.9 154 41.6
TPR.G18569 Trifolium pratense HOM05D005212 ORTHO05D006353 8.3e-23 110.9 78 62.8
Sed0012238 Sechium edule HOM05D005212 ORTHO05D006353 1.1e-22 110.5 78 64.1
Hund24107 Selenicereus undatus HOM05D005212 ORTHO05D006353 1.1e-22 110.5 78 62.8
Phvul.005G028500 Phaseolus vulgaris HOM05D005212 ORTHO05D006353 1.4e-22 110.2 70 68.6
BcaB06g29383 Brassica carinata HOM05D005212 ORTHO05D006353 2.4e-22 109.4 78 65.4
BcaNung07052 Brassica carinata HOM05D005212 ORTHO05D006353 2.4e-22 109.4 78 65.4
Aa31LG1G21440 Aethionema arabicum HOM05D005212 ORTHO05D006353 3.1e-22 109.0 157 43.3
AUR62014218 Chenopodium quinoa HOM05D005212 ORTHO05D006353 4.1e-22 108.6 70 72.9
Thhalv10001552m.g Eutrema salsugineum HOM05D005212 ORTHO05D006353 5.4e-22 108.2 156 44.9
Lsat_1_v5_gn_4_8681 Lactuca sativa HOM05D005212 ORTHO05D006353 5.4e-22 108.2 78 60.3
Carub.0004s2707 Capsella rubella HOM05D005212 ORTHO05D006353 7.0e-22 107.8 78 62.8
Medtr3g088850 Medicago truncatula HOM05D005212 ORTHO05D006353 7.0e-22 107.8 78 60.3
PSO384G3589 Papaver somniferum HOM05D005212 ORTHO05D006353 7.0e-22 107.8 81 61.7
Sp4g26600 Schrenkiella parvula HOM05D005212 ORTHO05D006353 7.0e-22 107.8 159 44.0
BcaC02g07097 Brassica carinata HOM05D005212 ORTHO05D006353 1.2e-21 107.1 78 64.1
A04p33360 Brassica napus HOM05D000073 ORTHO05D006698 1.2e-21 107.1 78 64.1
C04p71050 Brassica napus HOM05D000073 ORTHO05D006698 1.2e-21 107.1 78 64.1
BolC4t28609H Brassica oleracea HOM05D000073 ORTHO05D006353 1.2e-21 107.1 78 64.1
BraA04t18796Z Brassica rapa HOM05D000073 ORTHO05D000033 1.2e-21 107.1 78 64.1
CARHR139690 Cardamine hirsuta HOM05D005212 ORTHO05D006353 1.2e-21 107.1 160 45.0
DCAR_014725 Daucus carota HOM05D005212 ORTHO05D006353 1.2e-21 107.1 138 47.1
Medtr3g096970 Medicago truncatula HOM05D005212 ORTHO05D006353 1.2e-21 107.1 78 60.3
PSO339G5759 Papaver somniferum HOM05D005212 ORTHO05D006353 1.6e-21 106.7 81 60.5
Glyma.08G095400 Glycine max HOM05D005212 ORTHO05D006353 2.0e-21 106.3 149 45.0
PSO017G4317 Papaver somniferum HOM05D005212 ORTHO05D006353 2.0e-21 106.3 81 60.5
Ca_09937_v3 Cicer arietinum L. HOM05D005212 ORTHO05D006353 7.7e-21 104.4 69 71.0
Ca_09949_v3 Cicer arietinum L. HOM05D005212 ORTHO05D006353 7.7e-21 104.4 69 71.0
PSO478G2757 Papaver somniferum HOM05D005212 ORTHO05D006353 7.7e-21 104.4 173 37.6
Rhsim09G0094100 Rhododendron simsii HOM05D005212 ORTHO05D006353 7.7e-21 104.4 143 44.1
unitig_22.g5596 Utricularia gibba HOM05D005212 ORTHO05D006353 7.7e-21 104.4 59 76.3
VMungo1080G0912 Vigna mungo HOM05D005212 ORTHO05D006353 2.9e-20 102.4 68 67.6
AL4G43530 Arabidopsis lyrata HOM05D005212 ORTHO05D006353 6.6e-20 101.3 154 42.2
HPP92_020815 Vanilla planifolia HOM05D005212 ORTHO05D006353 6.6e-20 101.3 128 43.8
AT2G44510 Arabidopsis thaliana HOM05D005212 ORTHO05D006353 8.6e-20 100.9 162 39.5
Oeu014050.1 Olea europaea HOM05D005212 ORTHO05D006353 1.9e-19 99.8 140 45.0
Os03g0853900 Oryza sativa ssp. japonica HOM05D005212 ORTHO05D006353 1.9e-19 99.8 84 57.1
SalBow2G0696 Salvia bowleyana HOM05D005212 ORTHO05D006353 2.5e-19 99.4 152 43.4
AUR62014216 Chenopodium quinoa HOM05D005212 ORTHO05D006353 5.5e-19 98.2 140 43.6
Haze_10945 Corylus avellana HOM05D005212 ORTHO05D006353 2.1e-18 96.3 132 46.2
Oeu063592.1 Olea europaea HOM05D005212 ORTHO05D006353 8.0e-18 94.4 59 71.2
Pp3c25_10280 Physcomitrium patens HOM05D005212 ORTHO05D006353 3.0e-17 92.4 78 52.6
ATR0829G227 Amborella trichopoda HOM05D005212 ORTHO05D006353 6.8e-17 91.3 67 65.7
BcaB01g03308 Brassica carinata HOM05D005212 ORTHO05D006353 1.5e-16 90.1 71 59.2
Zm00001eb210590 Zea mays HOM05D005212 ORTHO05D006353 4.4e-16 88.6 88 47.7
Mapoly0006s0099 Marchantia polymorpha HOM05D005212 ORTHO05D006353 3.7e-15 85.5 78 51.3
SMO334G0102 Selaginella moellendorffii HOM05D005212 ORTHO05D006353 3.7e-15 85.5 70 54.3
AagrBONN_evm.TU.Sc2ySwM_344.3756 Anthoceros agrestis HOM05D005212 ORTHO05D006353 1.1e-14 84.0 69 56.5
AUR62014219 Chenopodium quinoa HOM05D005212 ORTHO05D006353 7.0e-14 81.3 133 42.1
CBR_g30204 Chara braunii HOM05D000019 ORTHO05D000353 3.5e-13 79.0 75 53.3
AUR62025478 Chenopodium quinoa HOM05D005212 ORTHO05D006353 8.6e-12 74.3 51 64.7
BcaC01g05169 Brassica carinata HOM05D005212 ORTHO05D006353 1.0e-09 67.4 79 48.1
Cre03.g200991 Chlamydomonas reinhardtii HOM05D005212 ORTHO05D006353 2.3e-09 66.2 79 41.8
Peaxi162Scf00376g00010 Petunia axillaris HOM05D005212 ORTHO05D006353 7.5e-08 61.2 37 64.9
AT5G03830 Arabidopsis thaliana HOM05D005212 ORTHO05D006353 1.4e-06 57.0 135 31.1
Cfa023609 Carpinus fangiana HOM05D005212 ORTHO05D006353 7.0e-06 54.7 94 34.0


User provided reference genes

Program Settings