Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Sabra11G0139800 Salix brachista HOM05D004608 ORTHO05D006533 6.2e-247 857.1 448 100.0
Potri.011G166100 Populus trichocarpa HOM05D004608 ORTHO05D006533 2.5e-211 738.8 448 88.8
Potri.001G469300 Populus trichocarpa HOM05D004608 ORTHO05D006533 3.0e-201 705.3 448 84.6
Sabra16G0318300 Salix brachista HOM05D004608 ORTHO05D006533 1.3e-199 699.9 453 84.3
Ciclev10008478m.g Citrus clementina HOM05D004608 ORTHO05D006533 5.7e-184 647.9 449 78.2
MD03G1039600 Malus domestica HOM05D004608 ORTHO05D006533 7.5e-184 647.5 448 77.5
Prupe.6G031700 Prunus persica HOM05D004608 ORTHO05D006533 1.3e-183 646.7 448 77.5
QL08p001615 Quercus lobata HOM05D004608 ORTHO05D006533 4.1e-182 641.7 447 77.2
Cfa016939 Carpinus fangiana HOM05D004608 ORTHO05D006533 7.0e-182 641.0 448 77.7
MD11G1040100 Malus domestica HOM05D004608 ORTHO05D006533 4.5e-181 638.3 448 76.1
Eucgr.F03661 Eucalyptus grandis HOM05D004608 ORTHO05D006533 2.8e-178 629.0 451 75.8
TWI38G2408 Tripterygium wilfordii HOM05D004608 ORTHO05D006533 6.1e-178 627.9 448 75.9
TWI38G1265 Tripterygium wilfordii HOM05D004608 ORTHO05D006533 8.0e-178 627.5 448 76.1
Atru.chr2.3848 Acer truncatum HOM05D004608 ORTHO05D006533 1.2e-176 623.6 446 75.8
Cpa.g.sc12.91 Carica papaya HOM05D004608 ORTHO05D006533 2.6e-176 622.5 448 75.7
COL.COLO4_07760 Corchorus olitorius HOM05D004608 ORTHO05D006533 2.6e-176 622.5 447 74.3
CiPaw.12G141700 Carya illinoinensis HOM05D004608 ORTHO05D006533 3.4e-176 622.1 449 75.3
PGR031G2516 Punica granatum HOM05D004608 ORTHO05D006533 1.7e-175 619.8 449 74.6
Duzib213G0525 Durio zibethinus HOM05D004608 ORTHO05D006533 7.0e-174 614.4 450 74.4
GSVIVG01014786001 Vitis vinifera HOM05D004608 ORTHO05D006533 9.2e-174 614.0 450 75.3
Lj1C897G12 Lonicera japonica HOM05D004608 ORTHO05D006533 1.2e-173 613.6 450 74.4
Thecc.07G005400 Theobroma cacao HOM05D004608 ORTHO05D006533 1.2e-173 613.6 448 74.3
Haze_09894 Corylus avellana HOM05D004608 ORTHO05D006533 1.6e-173 613.2 461 73.3
Gohir.D13G133200 Gossypium hirsutum HOM05D004608 ORTHO05D006533 2.0e-173 612.8 449 73.7
FvH4_3g42010 Fragaria vesca HOM05D004608 ORTHO05D006533 7.8e-173 610.9 448 73.9
Gohir.A13G130142 Gossypium hirsutum HOM05D004608 ORTHO05D006533 7.8e-173 610.9 449 73.5
CsaV3_7G021370 Cucumis sativus L. HOM05D004608 ORTHO05D006533 1.0e-172 610.5 446 74.9
RcHm_v2.0_Chr5g0075221 Rosa chinensis HOM05D004608 ORTHO05D006533 1.7e-172 609.8 448 73.9
Glyma.18G072500 Glycine max HOM05D004608 ORTHO05D006533 1.5e-171 606.7 452 73.2
Gorai.013G149500 Gossypium raimondii HOM05D004608 ORTHO05D006533 1.9e-171 606.3 457 72.4
Cc05_g15480 Coffea canephora HOM05D004608 ORTHO05D006533 2.5e-171 605.9 450 74.4
Gohir.D05G386600 Gossypium hirsutum HOM05D004608 ORTHO05D006533 3.3e-171 605.5 448 71.9
Gorai.009G453300 Gossypium raimondii HOM05D004608 ORTHO05D006533 9.5e-171 604.0 448 71.7
Sed0006020 Sechium edule HOM05D004608 ORTHO05D006533 1.6e-170 603.2 446 74.0
FAN25G0703 Fragaria x ananassa HOM05D004608 ORTHO05D006533 2.1e-170 602.8 459 72.1
Glyma.08G337500 Glycine max HOM05D004608 ORTHO05D006533 2.8e-170 602.4 452 73.0
HanXRQChr11g0334621 Helianthus annuus HOM05D004608 ORTHO05D006533 2.8e-170 602.4 448 73.7
FAN16G3187 Fragaria x ananassa HOM05D004608 ORTHO05D006533 3.6e-170 602.1 459 72.1
THA.LOC104815684 Tarenaya hassleriana HOM05D004608 ORTHO05D006533 6.1e-170 601.3 452 73.0
Ca_14850_v3 Cicer arietinum L. HOM05D004608 ORTHO05D006533 1.0e-169 600.5 456 73.2
Migut.M01599 Erythranthe guttata HOM05D004608 ORTHO05D006533 1.0e-169 600.5 453 73.3
CSS0047803 Camellia sinensis var. sinensis HOM05D004608 ORTHO05D006533 3.1e-169 599.0 448 73.4
Gohir.A04G003100 Gossypium hirsutum HOM05D004608 ORTHO05D006533 3.1e-169 599.0 448 71.2
Hund22995 Selenicereus undatus HOM05D004608 ORTHO05D006533 5.2e-169 598.2 449 71.9
vmacro11628 Vaccinium macrocarpon HOM05D004608 ORTHO05D006533 5.2e-169 598.2 462 71.2
ClCG09G021670 Citrullus lanatus HOM05D004608 ORTHO05D006533 6.8e-169 597.8 468 71.8
Sed0022757 Sechium edule HOM05D004608 ORTHO05D006533 8.9e-169 597.4 446 74.0
DCAR_017596 Daucus carota HOM05D004608 ORTHO05D006533 1.5e-168 596.7 443 72.0
HanXRQChr05g0160221 Helianthus annuus HOM05D004608 ORTHO05D006533 1.5e-168 596.7 450 72.0
FAN11G3108 Fragaria x ananassa HOM05D004608 ORTHO05D006533 2.6e-168 595.9 479 69.1
Sp3g11470 Schrenkiella parvula HOM05D004608 ORTHO05D006533 3.4e-168 595.5 448 72.3
MELO3C013214.2 Cucumis melo HOM05D004608 ORTHO05D006533 9.8e-168 594.0 446 73.8
FAN21G2140 Fragaria x ananassa HOM05D004608 ORTHO05D006533 2.2e-167 592.8 479 69.1
VMungo0540G0162 Vigna mungo HOM05D004608 ORTHO05D006533 2.2e-167 592.8 452 71.2
SGA_v2.0_scaffold168G38588 Striga asiatica HOM05D004608 ORTHO05D006533 4.9e-167 591.7 450 71.8
EL10Ac4g07509 Beta vulgaris HOM05D004608 ORTHO05D006533 8.3e-167 590.9 449 71.7
Actinidia30368 Actinidia chinensis HOM05D004608 ORTHO05D006533 1.1e-166 590.5 448 72.3
CAN.G492.45 Capsicum annuum HOM05D004608 ORTHO05D006533 1.9e-166 589.7 449 71.7
ECA236G2785 Erigeron canadensis HOM05D004608 ORTHO05D006533 4.1e-166 588.6 454 72.2
Phvul.006G060300 Phaseolus vulgaris HOM05D004608 ORTHO05D006533 4.1e-166 588.6 452 71.7
Lalb_Chr15g0082461 Lupinus albus HOM05D004608 ORTHO05D006533 2.0e-165 586.3 450 71.1
TPR.G17932 Trifolium pratense HOM05D004608 ORTHO05D006533 2.7e-165 585.9 452 70.4
AT3G13235 Arabidopsis thaliana HOM05D004608 ORTHO05D006533 3.5e-165 585.5 452 71.2
CANSAT11G0422 Cannabis sativa HOM05D004608 ORTHO05D006533 6.0e-165 584.7 450 70.2
Thhalv10020839m.g Eutrema salsugineum HOM05D004608 ORTHO05D006533 7.8e-165 584.3 448 71.7
Rhsim06G0233900 Rhododendron simsii HOM05D004608 ORTHO05D006533 1.7e-164 583.2 448 71.2
arahy.Tifrunner.gnm1.ann1.R4UTE8 Arachis hypogaea HOM05D004608 ORTHO05D006533 3.9e-164 582.0 455 70.3
MBI14_g00953_MAGBIO Magnolia biondii HOM05D004608 ORTHO05D006533 6.6e-164 581.3 448 69.9
AL3G25090 Arabidopsis lyrata HOM05D004608 ORTHO05D006533 8.6e-164 580.9 453 71.3
Aqoxy4G02317 Aquilegia oxysepala HOM05D004608 ORTHO05D006533 1.5e-163 580.1 448 69.6
CARHR087890 Cardamine hirsuta HOM05D004608 ORTHO05D006533 1.5e-163 580.1 452 70.4
MSTRG.7029 Avicennia marina HOM05D004608 ORTHO05D006533 1.6e-162 576.6 452 69.9
Nn1g07694 Nelumbo nucifera HOM05D004608 ORTHO05D006533 2.8e-162 575.9 448 69.9
Lsat_1_v5_gn_7_116460 Lactuca sativa HOM05D004608 ORTHO05D006533 3.6e-162 575.5 451 71.0
Sopen10g001840 Solanum pennellii HOM05D004608 ORTHO05D006533 3.6e-162 575.5 449 70.6
Solyc10g005890.3 Solanum lycopersicum HOM05D004608 ORTHO05D006533 4.7e-162 575.1 449 70.4
PGSC0003DMG400014406 Solanum tuberosum HOM05D004608 ORTHO05D006533 4.7e-162 575.1 444 70.9
arahy.Tifrunner.gnm1.ann1.EI2AUC Arachis hypogaea HOM05D004608 ORTHO05D006533 1.8e-161 573.2 471 67.9
Oeu026626.2 Olea europaea HOM05D004608 ORTHO05D006533 1.8e-161 573.2 457 70.5
Carub.0003s1265 Capsella rubella HOM05D004608 ORTHO05D006533 2.6e-160 569.3 452 69.7
Lj6g0013957 Lotus japonicus HOM05D004608 ORTHO05D006533 2.6e-160 569.3 450 70.0
Aa31LG8G500 Aethionema arabicum HOM05D004608 ORTHO05D006533 5.8e-160 568.2 461 67.7
C01p51800 Brassica napus HOM05D004608 ORTHO05D006533 9.8e-160 567.4 450 69.8
BolC3t16895H Brassica oleracea HOM05D004608 ORTHO05D006533 1.3e-159 567.0 459 69.3
C03p46240 Brassica napus HOM05D004608 ORTHO05D006533 2.9e-159 565.8 457 69.4
BraA03t12964Z Brassica rapa HOM05D004608 ORTHO05D006533 3.7e-159 565.5 451 69.2
A03p38110 Brassica napus HOM05D004608 ORTHO05D006533 4.9e-159 565.1 451 69.2
PSO541G2325 Papaver somniferum HOM05D004608 ORTHO05D006533 1.1e-158 563.9 449 67.5
CSS0013715 Camellia sinensis var. sinensis HOM05D004608 ORTHO05D006533 1.4e-158 563.5 448 69.9
Manes.05G206400 Manihot esculenta HOM05D004608 ORTHO05D006533 3.5e-157 558.9 379 79.4
AUR62017165 Chenopodium quinoa HOM05D004608 ORTHO05D006533 7.8e-157 557.8 446 68.2
BraA01t04064Z Brassica rapa HOM05D004608 ORTHO05D006533 1.3e-156 557.0 451 68.7
A01p40280 Brassica napus HOM05D004608 ORTHO05D006533 3.0e-156 555.8 451 68.7
Nitab4.5_0007214g0010 Nicotiana tabacum HOM05D004608 ORTHO05D006533 3.0e-156 555.8 449 69.0
AUR62035639 Chenopodium quinoa HOM05D004608 ORTHO05D006533 2.5e-155 552.7 446 67.9
Dinv40894 Davidia involucrata HOM05D004608 ORTHO05D006533 5.6e-155 551.6 397 75.8
Peaxi162Scf00219g00158 Petunia axillaris HOM05D004608 ORTHO05D006533 1.6e-154 550.1 454 68.3
ATR0587G001 Amborella trichopoda HOM05D004608 ORTHO05D006533 4.0e-153 545.4 428 69.4
Os02g0198600 Oryza sativa ssp. japonica HOM05D004608 ORTHO05D006533 1.3e-148 530.4 453 65.1
THA.LOC104801910 Tarenaya hassleriana HOM05D004608 ORTHO05D006533 6.6e-148 528.1 398 72.4
THA.LOC104810298 Tarenaya hassleriana HOM05D004608 ORTHO05D006533 6.6e-148 528.1 398 72.4
Psat5g164640 Pisum sativum HOM05D004608 ORTHO05D006533 5.2e-145 518.5 387 71.3
TAR624G0837 Trochodendron aralioides HOM05D004608 ORTHO05D006533 4.9e-143 511.9 449 65.9
HPP92_021912 Vanilla planifolia HOM05D004608 ORTHO05D006533 7.8e-141 504.6 451 62.1
Hma1.2p1_0193F.1_g084100 Hydrangea macrophylla HOM05D004608 ORTHO05D006533 2.1e-138 496.5 516 58.3
Hma1.2p1_2995F.1_g331425 Hydrangea macrophylla HOM05D004608 ORTHO05D006533 2.1e-138 496.5 516 58.3
TAR626G0684 Trochodendron aralioides HOM05D004608 ORTHO05D006533 9.9e-136 487.6 353 74.2
Duzib268G0270 Durio zibethinus HOM05D004608 ORTHO05D006533 1.7e-135 486.9 448 62.1
BolC1t05127H Brassica oleracea HOM05D004608 ORTHO05D006533 1.9e-134 483.4 456 62.5
Nitab4.5_0001622g0040 Nicotiana tabacum HOM05D004608 ORTHO05D006533 1.7e-132 476.9 394 67.8
Zm00001eb205890 Zea mays HOM05D004608 ORTHO05D006533 1.8e-129 466.8 374 67.9
Pp3c4_20890 Physcomitrium patens HOM05D004608 ORTHO05D006533 4.3e-123 445.7 454 55.1
AagrBONN_evm.TU.Sc2ySwM_117.3155 Anthoceros agrestis HOM05D004608 ORTHO05D006533 5.6e-115 418.7 461 49.9
Oeu019694.2 Olea europaea HOM05D004608 ORTHO05D006533 1.3e-114 417.5 466 55.8
Oeu019695.1 Olea europaea HOM05D004608 ORTHO05D006533 7.9e-109 398.3 445 55.5
Ah.06g180960 Amaranthus hybridus HOM05D004608 ORTHO05D006533 3.1e-105 386.3 370 60.3
Sc03g0011700 Simmondsia chinensis HOM05D004608 ORTHO05D006533 3.1e-105 386.3 309 69.3
Mapoly0030s0110 Marchantia polymorpha HOM05D004608 ORTHO05D006533 5.9e-104 382.1 409 52.3
unitig_899.g15266 Utricularia gibba HOM05D004608 ORTHO05D006533 4.5e-96 355.9 361 59.6
Actinidia10581 Actinidia chinensis HOM05D004608 ORTHO05D006533 2.6e-88 330.1 397 53.9
CBR_g36902 Chara braunii HOM05D004608 ORTHO05D006533 1.0e-79 301.6 353 48.4
CDE05G0237 Ceratophyllum demersum HOM05D004608 ORTHO05D006533 1.7e-74 284.3 298 56.4
MCO11G772 Micromonas commoda HOM05D004608 ORTHO05D006533 6.3e-74 282.3 456 39.9
PRCOL_00000426 Prasinoderma coloniale HOM05D004608 ORTHO05D006533 1.0e-68 265.0 464 37.7
Cre10.g447300 Chlamydomonas reinhardtii HOM05D004608 ORTHO05D006533 1.8e-60 237.7 506 33.6
Pp3c17_4800 Physcomitrium patens HOM05D004608 ORTHO05D006533 2.3e-60 237.3 501 35.1
CDE05G1663 Ceratophyllum demersum HOM05D004608 ORTHO05D006533 4.4e-59 233.0 126 87.3
Aa31LG10G450 Aethionema arabicum HOM05D004608 ORTHO05D006533 1.3e-55 221.5 363 40.2
QL09p009005 Quercus lobata HOM05D000176 ORTHO05D000106 3.4e-51 206.8 162 69.8
CSS0026438 Camellia sinensis var. sinensis HOM05D004608 ORTHO05D006533 3.3e-46 190.3 117 79.5
CSS0036658 Camellia sinensis var. sinensis HOM05D004608 ORTHO05D006533 7.3e-46 189.1 117 79.5
Cfa022177 Carpinus fangiana HOM05D004608 ORTHO05D006533 1.9e-41 174.5 370 33.8
AL5G25300 Arabidopsis lyrata HOM05D004608 ORTHO05D038587 4.1e-41 173.3 112 76.8
unitig_699.g19599 Utricularia gibba HOM05D004608 ORTHO05D006533 2.1e-40 171.0 373 31.9
Ah.06g180950 Amaranthus hybridus HOM05D004608 ORTHO05D006533 6.0e-40 169.5 130 69.2
Aa31LG10G470 Aethionema arabicum HOM05D004608 ORTHO05D006533 2.2e-34 151.0 353 33.7
QL05p082689 Quercus lobata HOM05D004608 ORTHO05D006533 2.2e-34 151.0 98 80.6
AUR62020809 Chenopodium quinoa HOM05D004608 ORTHO05D006533 8.1e-29 132.5 204 46.6
AL3G34310 Arabidopsis lyrata HOM05D004608 ORTHO05D038587 2.2e-26 124.4 117 58.1
CSS0047513 Camellia sinensis var. sinensis HOM05D004608 ORTHO05D006533 2.3e-23 114.4 58 86.2
AUR62025404 Chenopodium quinoa HOM05D000200 ORTHO05D000262 9.0e-20 102.4 102 56.9
VMungo0954G0002 Vigna mungo HOM05D004608 ORTHO05D432787 4.9e-18 96.7 133 45.9
A05p36340 Brassica napus HOM05D004608 ORTHO05D006533 9.3e-17 92.4 53 86.8
MD12G1084200 Malus domestica HOM05D004608 ORTHO05D249232 1.6e-16 91.7 102 54.9
unitig_899.g15265 Utricularia gibba HOM05D004608 ORTHO05D018951 2.1e-16 91.3 98 56.1
CDE05G3009 Ceratophyllum demersum HOM05D004608 ORTHO05D006533 6.0e-16 89.7 73 65.8
Ca_07476_v3 Cicer arietinum L. HOM05D004608 ORTHO05D018951 2.1e-13 81.3 56 78.6
TAR629G0124 Trochodendron aralioides HOM05D002759 ORTHO05D021026 3.4e-11 73.9 47 78.7
CDE05G1534 Ceratophyllum demersum HOM05D004608 ORTHO05D018951 3.8e-10 70.5 49 65.3
MD05G1213500 Malus domestica HOM05D004608 ORTHO05D246297 8.4e-10 69.3 66 63.6
QL09p040375 Quercus lobata HOM05D000176 ORTHO05D000106 8.4e-10 69.3 44 79.5
CBR_g31527 Chara braunii HOM05D004608 ORTHO05D006533 1.1e-09 68.9 102 41.2
MD05G1213200 Malus domestica HOM05D004608 ORTHO05D006533 1.4e-09 68.6 82 52.4
CDE05G2773 Ceratophyllum demersum HOM05D004608 ORTHO05D018951 2.4e-09 67.8 70 55.7
Glyma.10G116100 Glycine max HOM05D004608 ORTHO05D021061 3.2e-09 67.4 50 62.0
HanXRQChr05g0144601 Helianthus annuus HOM05D004608 ORTHO05D018951 4.6e-08 63.5 36 83.3
HanXRQChr08g0229721 Helianthus annuus HOM05D004608 ORTHO05D018951 4.6e-08 63.5 36 83.3
HanXRQChr12g0367991 Helianthus annuus HOM05D004608 ORTHO05D018951 4.6e-08 63.5 36 83.3
Lj3C745G8 Lonicera japonica HOM05D000041 ORTHO05D000452 4.6e-08 63.5 94 47.9
EL10Ac5g11554 Beta vulgaris HOM05D003131 ORTHO05D003761 5.1e-07 60.1 126 38.9
arahy.Tifrunner.gnm1.ann1.C1KQ7I Arachis hypogaea HOM05D004608 ORTHO05D006012 8.7e-07 59.3 50 60.0
HanXRQChr16g0512931 Helianthus annuus HOM05D004608 ORTHO05D018951 8.7e-07 59.3 36 83.3
QL03p010974 Quercus lobata HOM05D003881 ORTHO05D004343 3.3e-06 57.4 101 42.6


User provided reference genes

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