Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Sabra11G0134500 Salix brachista HOM05D011672 ORTHO05D011012 0.0e+00 2158.6 1114 100.0
Potri.011G149601 Populus trichocarpa HOM05D011672 ORTHO05D011012 0.0e+00 1639.0 1116 78.9
Potri.001G452300 Populus trichocarpa HOM05D011672 ORTHO05D011012 7.8e-206 721.8 1162 42.2
Sabra16G0305400 Salix brachista HOM05D011672 ORTHO05D011012 1.5e-153 548.1 1157 36.5
Duzib084G0474 Durio zibethinus HOM05D011672 ORTHO05D011012 5.8e-68 263.8 1172 27.9
QL02p027097 Quercus lobata HOM05D013249 ORTHO05D011012 1.1e-61 243.0 536 33.8
Haze_09217 Corylus avellana HOM05D013249 ORTHO05D011012 2.1e-57 228.8 591 32.0
CiPaw.12G074500 Carya illinoinensis HOM05D011672 ORTHO05D011012 1.7e-48 199.1 354 39.0
Duzib068G0278 Durio zibethinus HOM05D011672 ORTHO05D011012 5.8e-44 184.1 614 29.0
Thecc.03G215600 Theobroma cacao HOM05D011672 ORTHO05D011012 7.6e-44 183.7 625 30.6
TWI81G0792 Tripterygium wilfordii HOM05D011672 ORTHO05D011012 6.4e-43 180.6 551 30.3
TAR374G0213 Trochodendron aralioides HOM05D006657 ORTHO05D005964 1.2e-41 176.4 542 31.0
Prupe.5G135100 Prunus persica HOM05D013249 ORTHO05D011012 1.7e-35 156.0 633 28.4
MD06G1124500 Malus domestica HOM05D013249 ORTHO05D011012 4.2e-34 151.4 473 30.4
TAR375G0071 Trochodendron aralioides HOM05D006657 ORTHO05D005964 1.3e-32 146.4 549 28.8
RcHm_v2.0_Chr7g0187831 Rosa chinensis HOM05D013249 ORTHO05D011012 4.8e-30 137.9 594 27.3
COL.COLO4_10845 Corchorus olitorius HOM05D011672 ORTHO05D011012 3.1e-29 135.2 344 32.3
TAR629G2606 Trochodendron aralioides HOM05D006657 ORTHO05D005964 2.2e-27 129.0 559 28.1
Gohir.D12G243700 Gossypium hirsutum HOM05D011672 ORTHO05D011012 3.2e-26 125.2 525 27.0
Gohir.A12G242700 Gossypium hirsutum HOM05D011672 ORTHO05D011012 9.3e-26 123.6 512 28.5
Gorai.008G261200 Gossypium raimondii HOM05D011672 ORTHO05D011012 6.7e-24 117.5 634 27.9
FAN04G0229 Fragaria x ananassa HOM05D013249 ORTHO05D011012 1.3e-22 113.2 531 26.4
FvH4_5g10390 Fragaria vesca HOM05D013249 ORTHO05D011012 1.6e-22 112.8 555 25.4
CSS0010102 Camellia sinensis var. sinensis HOM05D006657 ORTHO05D005964 6.3e-22 110.9 529 26.5
FAN08G0662 Fragaria x ananassa HOM05D013249 ORTHO05D011012 1.1e-21 110.2 555 26.5
FAN13G1375 Fragaria x ananassa HOM05D013249 ORTHO05D011012 1.4e-21 109.8 555 25.8
FAN18G3072 Fragaria x ananassa HOM05D013249 ORTHO05D011012 1.4e-21 109.8 555 25.4
Lalb_Chr18g0054711 Lupinus albus HOM05D013241 ORTHO05D011012 5.3e-21 107.8 327 28.7
Lj6g0008807 Lotus japonicus HOM05D013241 ORTHO05D011012 1.5e-20 106.3 351 27.4
Cpa.g.sc37.109 Carica papaya HOM05D011672 ORTHO05D012736 4.5e-20 104.8 273 31.5
Eucgr.L00346 Eucalyptus grandis HOM05D013249 ORTHO05D011012 1.0e-19 103.6 370 27.8
TPR.G4557 Trifolium pratense HOM05D013241 ORTHO05D011012 4.2e-18 98.2 382 29.1
Atru.chr9.1833 Acer truncatum HOM05D011672 ORTHO05D011012 1.6e-17 96.3 169 34.9
Ca_00458_v3 Cicer arietinum L. HOM05D013241 ORTHO05D011012 2.1e-17 95.9 352 27.3
Psat1g195680 Pisum sativum HOM05D013241 ORTHO05D011012 6.1e-17 94.4 365 29.6
arahy.Tifrunner.gnm1.ann1.69Z0CE Arachis hypogaea HOM05D013241 ORTHO05D011012 7.4e-15 87.4 326 25.5
arahy.Tifrunner.gnm1.ann1.62N0H4 Arachis hypogaea HOM05D000074 ORTHO05D011012 9.7e-15 87.0 326 25.2
Dinv29204 Davidia involucrata HOM05D006657 ORTHO05D005964 1.3e-14 86.7 582 23.2
VMungo0540G2099 Vigna mungo HOM05D013241 ORTHO05D011012 1.7e-14 86.3 339 28.0
Phvul.006G174000 Phaseolus vulgaris HOM05D013241 ORTHO05D011012 2.8e-14 85.5 317 29.0
vmacro06453 Vaccinium macrocarpon HOM05D006657 ORTHO05D005964 6.3e-14 84.3 285 27.0
GSVIVG01038660001 Vitis vinifera HOM05D006657 ORTHO05D005964 8.2e-14 84.0 570 22.3
Dinv17292 Davidia involucrata HOM05D006657 ORTHO05D005964 2.6e-12 79.0 592 23.5
Cfa016147 Carpinus fangiana HOM05D006657 ORTHO05D005964 7.7e-12 77.4 381 26.2
QL09p006779 Quercus lobata HOM05D006657 ORTHO05D005964 3.8e-11 75.1 388 24.2
Ciclev10018632m.g Citrus clementina HOM05D006657 ORTHO05D005964 6.5e-11 74.3 298 27.5
Medtr2g016640 Medicago truncatula HOM05D013241 ORTHO05D011012 6.5e-11 74.3 342 27.8
Haze_00307 Corylus avellana HOM05D006657 ORTHO05D005964 8.5e-11 73.9 548 24.5
CARHR256170 Cardamine hirsuta HOM05D010823 ORTHO05D012736 1.1e-10 73.6 321 28.7
Glyma.13G227600 Glycine max HOM05D013241 ORTHO05D011012 1.9e-10 72.8 272 29.4
Actinidia08706 Actinidia chinensis HOM05D006657 ORTHO05D005964 2.5e-10 72.4 473 20.7
Manes.01G044100 Manihot esculenta HOM05D006657 ORTHO05D005964 9.4e-10 70.5 355 23.9
Actinidia34275 Actinidia chinensis HOM05D006657 ORTHO05D005964 1.2e-09 70.1 495 21.6
Atru.chr9.1832 Acer truncatum HOM05D011672 ORTHO05D011012 1.6e-09 69.7 127 35.4
Rhsim03G0216600 Rhododendron simsii HOM05D006657 ORTHO05D005964 2.7e-09 68.9 355 25.9
Nitab4.5_0000021g0080 Nicotiana tabacum HOM05D006657 ORTHO05D005964 6.1e-09 67.8 323 25.7
TWI23G1261 Tripterygium wilfordii HOM05D006657 ORTHO05D005964 7.9e-09 67.4 339 23.6
Atru.chr12.2479 Acer truncatum HOM05D006657 ORTHO05D005964 1.4e-08 66.6 351 25.9
Nitab4.5_0006821g0010 Nicotiana tabacum HOM05D006657 ORTHO05D005964 1.8e-08 66.2 321 25.5
Peaxi162Scf00912g00114 Petunia axillaris HOM05D006657 ORTHO05D005964 1.8e-08 66.2 370 24.3
Nn1g05264 Nelumbo nucifera HOM05D006657 ORTHO05D005964 5.1e-08 64.7 268 26.5
Thecc.03G210000 Theobroma cacao HOM05D006657 ORTHO05D005964 5.1e-08 64.7 293 25.3
CAN.G303.40 Capsicum annuum HOM05D006657 ORTHO05D005964 6.7e-08 64.3 306 24.5
Duzib068G0081 Durio zibethinus HOM05D006657 ORTHO05D005964 1.1e-07 63.5 284 23.9
Duzib205G0597 Durio zibethinus HOM05D006657 ORTHO05D005964 2.0e-07 62.8 324 23.8
Lalb_Chr23g0272001 Lupinus albus HOM05D006657 ORTHO05D005964 2.0e-07 62.8 349 23.8
TWI14G0251 Tripterygium wilfordii HOM05D006657 ORTHO05D005964 2.6e-07 62.4 300 25.7
RcHm_v2.0_Chr1g0383041 Rosa chinensis HOM05D006657 ORTHO05D005964 1.3e-06 60.1 312 26.3
arahy.Tifrunner.gnm1.ann1.UB23H3 Arachis hypogaea HOM05D006657 ORTHO05D005964 2.2e-06 59.3 81 39.5
Gorai.004G125800 Gossypium raimondii HOM05D006657 ORTHO05D005964 2.2e-06 59.3 323 23.8
AL6G44510 Arabidopsis lyrata HOM05D010823 ORTHO05D012736 6.3e-06 57.8 388 22.2
MSTRG.26967 Avicennia marina HOM05D006657 ORTHO05D005964 6.3e-06 57.8 333 24.6


User provided reference genes

Program Settings