Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Sabra11G0122500 Salix brachista HOM05D004411 ORTHO05D005569 1.2e-225 786.2 410 100.0
Potri.011G136400 Populus trichocarpa HOM05D004411 ORTHO05D005569 6.0e-188 661.0 411 85.4
Ciclev10008629m.g Citrus clementina HOM05D004411 ORTHO05D005569 2.6e-106 389.8 411 55.5
TWI38G0098 Tripterygium wilfordii HOM05D004411 ORTHO05D005569 2.6e-106 389.8 415 56.1
Atru.chr2.3274 Acer truncatum HOM05D004411 ORTHO05D005569 2.2e-105 386.7 442 53.6
QL08p012116 Quercus lobata HOM05D004411 ORTHO05D005569 1.6e-103 380.6 430 54.9
QL08p011929 Quercus lobata HOM05D004411 ORTHO05D005569 3.5e-103 379.4 430 54.4
GSVIVG01008286001 Vitis vinifera HOM05D004411 ORTHO05D005569 1.5e-101 374.0 414 54.6
Prupe.4G208500 Prunus persica HOM05D004411 ORTHO05D005569 3.0e-99 366.3 413 55.0
Eucgr.E01365 Eucalyptus grandis HOM05D004411 ORTHO05D005569 9.8e-98 361.3 415 50.8
Dinv22283 Davidia involucrata HOM05D004411 ORTHO05D005569 8.3e-97 358.2 414 53.6
Dinv40733 Davidia involucrata HOM05D004411 ORTHO05D005569 9.2e-96 354.8 365 57.5
Sc06g0005160 Simmondsia chinensis HOM05D004411 ORTHO05D005569 4.3e-93 345.9 360 56.9
CSS0013783 Camellia sinensis var. sinensis HOM05D004411 ORTHO05D005569 1.4e-91 340.9 414 52.2
Duzib213G0043 Durio zibethinus HOM05D004411 ORTHO05D005569 3.1e-91 339.7 420 51.7
CiPaw.05G090700 Carya illinoinensis HOM05D004411 ORTHO05D005569 5.2e-91 339.0 416 51.7
Thecc.07G044400 Theobroma cacao HOM05D004411 ORTHO05D005569 6.8e-91 338.6 414 51.7
PGR083G2632 Punica granatum HOM05D004411 ORTHO05D005569 8.9e-91 338.2 423 49.9
Gorai.002G085400 Gossypium raimondii HOM05D004411 ORTHO05D005569 9.8e-90 334.7 414 51.4
Gohir.A01G077000 Gossypium hirsutum HOM05D004411 ORTHO05D005569 1.3e-89 334.3 412 53.2
Gohir.D01G064500 Gossypium hirsutum HOM05D004411 ORTHO05D005569 2.2e-89 333.6 414 51.0
CANSAT56G2724 Cannabis sativa HOM05D004411 ORTHO05D005569 4.9e-89 332.4 416 50.5
Atru.chr7.1306 Acer truncatum HOM05D004411 ORTHO05D005569 8.3e-89 331.6 332 57.5
RcHm_v2.0_Chr5g0037971 Rosa chinensis HOM05D004411 ORTHO05D005569 8.3e-89 331.6 411 53.0
Actinidia35328 Actinidia chinensis HOM05D004411 ORTHO05D005569 1.1e-88 331.3 419 51.3
TAR627G0926 Trochodendron aralioides HOM05D004411 ORTHO05D005569 2.4e-88 330.1 420 50.0
Rhsim04G0001700 Rhododendron simsii HOM05D004411 ORTHO05D005569 3.0e-86 323.2 413 50.4
FvH4_3g22120 Fragaria vesca HOM05D004411 ORTHO05D005569 1.9e-85 320.5 412 50.5
MD11G1222400 Malus domestica HOM05D004411 ORTHO05D005569 1.9e-85 320.5 375 53.1
Medtr3g019330 Medicago truncatula HOM05D004411 ORTHO05D005569 1.9e-85 320.5 419 46.8
Cc02_g24710 Coffea canephora HOM05D004411 ORTHO05D005569 1.2e-84 317.8 411 47.7
TWI38G2195 Tripterygium wilfordii HOM05D004411 ORTHO05D005569 2.1e-84 317.0 267 65.9
Hma1.2p1_0938F.1_g239200 Hydrangea macrophylla HOM05D004411 ORTHO05D005569 3.1e-83 313.2 410 48.5
RcHm_v2.0_Chr1g0330851 Rosa chinensis HOM05D004411 ORTHO05D005569 1.5e-82 310.8 234 70.9
Lj6g0013350 Lotus japonicus HOM05D004411 ORTHO05D005569 2.9e-81 306.6 398 49.0
Rhsim04G0000600 Rhododendron simsii HOM05D004411 ORTHO05D005569 4.9e-81 305.8 426 47.9
ClCG10G005570 Citrullus lanatus HOM05D004411 ORTHO05D005569 6.4e-81 305.4 415 47.2
vmacro09736 Vaccinium macrocarpon HOM05D004411 ORTHO05D005569 1.4e-80 304.3 414 47.8
Migut.H01843 Erythranthe guttata HOM05D004411 ORTHO05D005569 1.9e-80 303.9 422 46.4
FAN25G3657 Fragaria x ananassa HOM05D006818 ORTHO05D008674 3.2e-80 303.1 432 48.4
Hund07317 Selenicereus undatus HOM05D004411 ORTHO05D005569 4.1e-80 302.8 418 47.6
Psat5g216880 Pisum sativum HOM05D004411 ORTHO05D005569 5.4e-80 302.4 417 47.2
Glyma.08G313000 Glycine max HOM05D004411 ORTHO05D005569 7.1e-80 302.0 279 58.4
Ca_05663_v3 Cicer arietinum L. HOM05D004411 ORTHO05D005569 1.2e-79 301.2 426 46.0
Solyc07g064300.3 Solanum lycopersicum HOM05D004411 ORTHO05D005569 1.6e-79 300.8 411 46.7
CiPaw.11G186800 Carya illinoinensis HOM05D004411 ORTHO05D005569 4.6e-79 299.3 245 67.8
Ca_24447_v3 Cicer arietinum L. HOM05D004411 ORTHO05D005569 4.6e-79 299.3 428 45.1
CAN.G337.104 Capsicum annuum HOM05D004411 ORTHO05D005569 6.0e-79 298.9 412 47.3
Aa31LG10G3320 Aethionema arabicum HOM05D004411 ORTHO05D005569 1.3e-78 297.7 419 46.3
Manes.03G127300 Manihot esculenta HOM05D004411 ORTHO05D005569 1.3e-78 297.7 405 47.9
Peaxi162Scf00450g00868 Petunia axillaris HOM05D004411 ORTHO05D005569 1.3e-78 297.7 411 46.5
THA.LOC104798777 Tarenaya hassleriana HOM05D004411 ORTHO05D005569 1.7e-78 297.4 418 46.2
EL10Ac9g22002 Beta vulgaris HOM05D004411 ORTHO05D005569 6.6e-78 295.4 403 48.9
TPR.G3855 Trifolium pratense HOM05D004411 ORTHO05D005569 6.6e-78 295.4 450 44.4
MSTRG.12964 Avicennia marina HOM05D004411 ORTHO05D005569 8.6e-78 295.0 430 47.2
Nitab4.5_0009551g0010 Nicotiana tabacum HOM05D004411 ORTHO05D005569 1.1e-77 294.7 437 45.3
Sed0027425 Sechium edule HOM05D004411 ORTHO05D005569 1.9e-77 293.9 409 45.5
Lalb_Chr18g0049751 Lupinus albus HOM05D004411 ORTHO05D005569 1.6e-76 290.8 360 46.4
Oeu021397.1 Olea europaea HOM05D004411 ORTHO05D005569 2.8e-76 290.0 241 62.7
CsaV3_3G017510 Cucumis sativus L. HOM05D004411 ORTHO05D005569 3.6e-76 289.7 421 45.4
MELO3C003591.2 Cucumis melo HOM05D004411 ORTHO05D005569 1.4e-75 287.7 416 43.5
TAR624G0740 Trochodendron aralioides HOM05D004411 ORTHO05D005569 1.4e-75 287.7 364 50.5
PSO210G7535 Papaver somniferum HOM05D004411 ORTHO05D005569 1.2e-74 284.6 426 43.9
arahy.Tifrunner.gnm1.ann1.01DGNM Arachis hypogaea HOM05D004411 ORTHO05D005569 5.8e-74 282.3 272 56.6
ECA236G1785 Erigeron canadensis HOM05D004411 ORTHO05D005569 3.7e-73 279.6 363 49.9
HanXRQChr11g0336281 Helianthus annuus HOM05D004411 ORTHO05D005569 3.2e-72 276.6 406 45.8
arahy.Tifrunner.gnm1.ann1.7KL5HB Arachis hypogaea HOM05D004411 ORTHO05D005569 4.1e-72 276.2 371 45.8
Oeu005458.1 Olea europaea HOM05D004411 ORTHO05D005569 7.1e-72 275.4 448 42.2
AUR62000402 Chenopodium quinoa HOM05D004411 ORTHO05D005569 1.6e-71 274.2 388 46.6
PSO210G6597 Papaver somniferum HOM05D004411 ORTHO05D005569 1.6e-71 274.2 419 43.9
Lj2g0018498 Lotus japonicus HOM05D004411 ORTHO05D005569 2.1e-71 273.9 395 45.1
Medtr4g088440 Medicago truncatula HOM05D004411 ORTHO05D005569 4.6e-71 272.7 266 57.9
Cpa.g.sc12.166 Carica papaya HOM05D004411 ORTHO05D005569 6.0e-71 272.3 414 43.7
Phvul.006G038300 Phaseolus vulgaris HOM05D004411 ORTHO05D005569 6.0e-71 272.3 360 49.2
SalBow7G1998 Salvia bowleyana HOM05D004411 ORTHO05D005569 1.7e-70 270.8 440 41.4
AL1G58640 Arabidopsis lyrata HOM05D004411 ORTHO05D005569 2.3e-70 270.4 272 55.9
CARHR040960 Cardamine hirsuta HOM05D004411 ORTHO05D005569 3.9e-70 269.6 227 63.9
Thhalv10011488m.g Eutrema salsugineum HOM05D004411 ORTHO05D005569 1.2e-68 264.6 273 56.4
AT1G50910 Arabidopsis thaliana HOM05D004411 ORTHO05D005569 2.1e-68 263.8 396 45.2
Carub.0001s3986 Capsella rubella HOM05D004411 ORTHO05D005569 2.8e-68 263.5 273 54.6
Lsat_1_v5_gn_7_109101 Lactuca sativa HOM05D004411 ORTHO05D005569 1.8e-67 260.8 355 48.5
Sp1g37650 Schrenkiella parvula HOM05D004411 ORTHO05D005569 1.8e-67 260.8 462 41.6
SGA_v2.0_scaffold9G05058 Striga asiatica HOM05D004411 ORTHO05D005569 1.8e-67 260.8 473 40.6
Glyma.08G318600 Glycine max HOM05D004411 ORTHO05D005569 2.6e-66 256.9 334 49.1
unitig_0.g2388 Utricularia gibba HOM05D004411 ORTHO05D005569 3.4e-66 256.5 238 57.6
FAN21G4008 Fragaria x ananassa HOM05D004411 ORTHO05D005569 5.8e-66 255.8 429 43.1
DCAR_008678 Daucus carota HOM05D004411 ORTHO05D005569 2.4e-64 250.4 364 47.3
FAN16G0093 Fragaria x ananassa HOM05D006818 ORTHO05D008674 8.7e-62 241.9 444 39.9
BcaB07g33532 Brassica carinata HOM05D004411 ORTHO05D005569 1.1e-61 241.5 271 53.9
BcaC08g43264 Brassica carinata HOM05D004411 ORTHO05D005569 1.5e-61 241.1 424 41.5
C06p06080 Brassica napus HOM05D004411 ORTHO05D005569 1.5e-61 241.1 424 41.5
BolC6t35721H Brassica oleracea HOM05D004411 ORTHO05D005569 1.5e-61 241.1 424 41.5
BraA06t23489Z Brassica rapa HOM05D004411 ORTHO05D005569 7.3e-61 238.8 230 60.0
A06p02820 Brassica napus HOM05D004411 ORTHO05D005569 1.3e-60 238.0 276 52.9
AUR62006758 Chenopodium quinoa HOM05D004411 ORTHO05D005569 1.1e-59 235.0 364 42.9
AL8G37460 Arabidopsis lyrata HOM05D004411 ORTHO05D005569 1.4e-59 234.6 200 64.0
SHI31835 Sapria himalayana HOM05D004411 ORTHO05D005569 2.4e-59 233.8 296 50.7
AL2G19790 Arabidopsis lyrata HOM05D004411 ORTHO05D005569 2.6e-58 230.3 198 63.6
Haze_09645 Corylus avellana HOM05D006818 ORTHO05D008674 1.3e-57 228.0 365 41.6
Lalb_Chr15g0080391 Lupinus albus HOM05D004411 ORTHO05D005569 1.3e-57 228.0 200 63.0
ATR0564G530 Amborella trichopoda HOM05D004411 ORTHO05D005569 2.9e-57 226.9 271 50.2
PGSC0003DMG402013923 Solanum tuberosum HOM05D004411 ORTHO05D005569 2.4e-56 223.8 412 39.3
BolC5t32046H Brassica oleracea HOM05D004411 ORTHO05D005569 1.2e-55 221.5 229 56.8
Aqoxy3G00168 Aquilegia oxysepala HOM05D004411 ORTHO05D005569 3.5e-55 219.9 413 39.2
Nn1g07099 Nelumbo nucifera HOM05D004411 ORTHO05D005569 7.9e-55 218.8 200 62.5
Aqoxy7G03937 Aquilegia oxysepala HOM05D004411 ORTHO05D005569 1.1e-53 214.9 413 39.0
BcaB06g26197 Brassica carinata HOM05D004411 ORTHO05D005569 9.6e-53 211.8 230 55.2
CDE07G0547 Ceratophyllum demersum HOM05D004411 ORTHO05D005569 9.6e-53 211.8 300 45.3
C05p33200 Brassica napus HOM05D004411 ORTHO05D005569 1.7e-49 201.1 208 56.2
Nitab4.5_0000397g0320 Nicotiana tabacum HOM05D004411 ORTHO05D005569 8.4e-49 198.7 453 35.1
BcaB02g11193 Brassica carinata HOM05D004411 ORTHO05D005569 1.1e-48 198.4 324 43.5
FAN11G0521 Fragaria x ananassa HOM05D006818 ORTHO05D008674 1.4e-48 198.0 407 37.6
SEGI_26616 Sequoiadendron giganteum HOM05D004411 ORTHO05D005569 9.3e-48 195.3 439 36.7
MD03G1208200 Malus domestica HOM05D004411 ORTHO05D005569 2.1e-47 194.1 378 39.2
HPP92_013625 Vanilla planifolia HOM05D004411 ORTHO05D005569 3.9e-46 189.9 229 50.7
PSO210G0554 Papaver somniferum HOM05D004411 ORTHO05D005569 1.1e-45 188.3 290 42.1
Nitab4.5_0000622g0210 Nicotiana tabacum HOM05D004411 ORTHO05D005569 5.6e-45 186.0 199 54.3
Zm00001eb317630 Zea mays HOM05D004411 ORTHO05D005569 1.4e-43 181.4 234 46.2
Zm00001eb253190 Zea mays HOM05D004411 ORTHO05D005569 3.1e-43 180.3 234 46.2
COL.COLO4_09627 Corchorus olitorius HOM05D004411 ORTHO05D005569 1.1e-40 171.8 299 43.8
Os09g0504900 Oryza sativa ssp. japonica HOM05D004411 ORTHO05D005569 1.2e-39 168.3 262 43.1
Sopen07g032450 Solanum pennellii HOM05D004411 ORTHO05D005569 1.6e-36 157.9 321 38.9
Ah.06g195930 Amaranthus hybridus HOM05D004411 ORTHO05D005569 7.6e-34 149.1 249 43.4
PSO339G6638 Papaver somniferum HOM05D004411 ORTHO05D005569 3.8e-33 146.7 189 46.0
PGSC0003DMG401013923 Solanum tuberosum HOM05D004411 ORTHO05D005569 1.2e-31 141.7 261 35.2
VMungo1383G2244 Vigna mungo HOM05D004411 ORTHO05D005569 2.1e-31 141.0 122 60.7
ECA236G1239 Erigeron canadensis HOM05D004411 ORTHO05D005569 9.7e-29 132.1 260 41.2
Glyma.09G101400 Glycine max HOM05D004411 ORTHO05D005569 1.6e-28 131.3 146 53.4
DCAR_011015 Daucus carota HOM05D004411 ORTHO05D005569 1.1e-27 128.6 127 52.8
A05p19860 Brassica napus HOM05D004411 ORTHO05D005569 3.1e-27 127.1 127 56.7
BraA05t20891Z Brassica rapa HOM05D004411 ORTHO05D005569 3.1e-27 127.1 127 56.7
Hma1.2p1_3713F.1_g337350 Hydrangea macrophylla HOM05D004411 ORTHO05D005569 7.7e-26 122.5 85 69.4
Cc09_g02490 Coffea canephora HOM05D004411 ORTHO05D005569 3.8e-25 120.2 93 66.7
Cc00_g16970 Coffea canephora HOM05D004411 ORTHO05D005569 1.6e-23 114.8 117 54.7
Glyma.09G101500 Glycine max HOM05D004411 ORTHO05D005569 3.6e-23 113.6 84 64.3
VMungo0540G0671 Vigna mungo HOM05D004411 ORTHO05D005569 4.6e-23 113.2 130 50.0
Oeu034511.1 Olea europaea HOM05D004411 ORTHO05D005569 6.1e-23 112.8 81 63.0
VMungo1383G3213 Vigna mungo HOM05D004411 ORTHO05D005569 7.9e-23 112.5 146 49.3
Pp3c25_11530 Physcomitrium patens HOM05D004411 ORTHO05D005569 1.4e-22 111.7 229 35.8
BcaC05g27378 Brassica carinata HOM05D003430 ORTHO05D004809 2.3e-22 110.9 86 64.0
Cc02_g22100 Coffea canephora HOM05D004411 ORTHO05D005569 6.3e-20 102.8 114 50.9
EL10Ac9g22233 Beta vulgaris HOM05D004411 ORTHO05D005569 1.8e-19 101.3 234 36.8
Mapoly0160s0028 Marchantia polymorpha HOM05D004411 ORTHO05D005569 9.1e-19 99.0 225 32.0
Haze_07158 Corylus avellana HOM05D004411 ORTHO05D005569 4.2e-16 90.1 53 81.1
PGSC0003DMG400013925 Solanum tuberosum HOM05D004411 ORTHO05D005569 2.2e-12 77.8 80 51.2
GSVIVG01036883001 Vitis vinifera HOM05D004411 ORTHO05D005569 1.4e-11 75.1 55 63.6
arahy.Tifrunner.gnm1.ann1.ZM7UYF Arachis hypogaea HOM05D004411 ORTHO05D005569 9.1e-11 72.4 98 42.9
arahy.Tifrunner.gnm1.ann1.H97TV8 Arachis hypogaea HOM05D004411 ORTHO05D005569 3.5e-10 70.5 83 42.2
Lalb_Chr15g0080381 Lupinus albus HOM05D004411 ORTHO05D005569 3.5e-10 70.5 94 39.4
SMO367G0149 Selaginella moellendorffii HOM05D004411 ORTHO05D005569 1.0e-09 68.9 218 28.9
AagrBONN_evm.TU.Sc2ySwM_344.3992 Anthoceros agrestis HOM05D004411 ORTHO05D005569 1.2e-07 62.0 129 35.7
CBR_g6715 Chara braunii HOM05D004411 ORTHO05D005569 1.4e-06 58.5 185 29.7


User provided reference genes

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