Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Sabra11G0119100 Salix brachista HOM05D000247 ORTHO05D000288 6.1e-35 150.2 73 100.0
Potri.001G416500 Populus trichocarpa HOM05D000247 ORTHO05D000288 1.6e-19 99.0 76 63.2
Manes.03G122050 Manihot esculenta HOM05D000247 ORTHO05D000288 8.9e-18 93.2 73 60.3
Duzib213G0045 Durio zibethinus HOM05D000247 ORTHO05D000288 3.4e-17 91.3 67 65.7
Manes.15G077200 Manihot esculenta HOM05D000247 ORTHO05D000288 5.7e-17 90.5 73 58.9
Dinv22313 Davidia involucrata HOM05D000247 ORTHO05D000288 9.8e-17 89.7 76 56.6
Dinv03941 Davidia involucrata HOM05D000247 ORTHO05D000288 1.3e-16 89.4 76 55.3
Dinv17847 Davidia involucrata HOM05D000247 ORTHO05D000288 2.8e-16 88.2 76 52.6
Thecc.06G208700 Theobroma cacao HOM05D000247 ORTHO05D000288 6.3e-16 87.0 76 53.9
CiPaw.10G066700 Carya illinoinensis HOM05D000247 ORTHO05D000288 1.4e-15 85.9 74 55.4
COL.COLO4_09557 Corchorus olitorius HOM05D000247 ORTHO05D000288 1.4e-15 85.9 70 58.6
Cfa016411 Carpinus fangiana HOM05D000247 ORTHO05D000288 2.4e-15 85.1 76 55.3
Gohir.A01G073900 Gossypium hirsutum HOM05D000247 ORTHO05D000288 2.4e-15 85.1 72 56.9
Haze_06688 Corylus avellana HOM05D000141 ORTHO05D001968 3.2e-15 84.7 76 55.3
COL.COLO4_31688 Corchorus olitorius HOM05D000247 ORTHO05D000288 4.1e-15 84.3 76 50.0
Gohir.D01G060400 Gossypium hirsutum HOM05D000247 ORTHO05D000288 7.0e-15 83.6 72 55.6
Gorai.002G081800 Gossypium raimondii HOM05D000247 ORTHO05D000288 7.0e-15 83.6 72 55.6
Thecc.07G055000 Theobroma cacao HOM05D000247 ORTHO05D000288 7.0e-15 83.6 67 58.2
Dinv18939 Davidia involucrata HOM05D000247 ORTHO05D000288 1.2e-14 82.8 76 50.0
Oeu013857.1 Olea europaea HOM05D000247 ORTHO05D000288 1.6e-14 82.4 76 52.6
Prupe.4G029100 Prunus persica HOM05D000247 ORTHO05D000288 2.0e-14 82.0 75 52.0
GSVIVG01014587001 Vitis vinifera HOM05D000247 ORTHO05D000288 3.5e-14 81.3 76 50.0
Aqoxy1G03798 Aquilegia oxysepala HOM05D000247 ORTHO05D000288 5.9e-14 80.5 68 54.4
CiPaw.09G080500 Carya illinoinensis HOM05D000247 ORTHO05D000288 5.9e-14 80.5 74 50.0
Duzib170G0151 Durio zibethinus HOM05D000247 ORTHO05D000288 5.9e-14 80.5 67 55.2
Oeu013858.2 Olea europaea HOM05D000141 ORTHO05D001968 5.9e-14 80.5 76 51.3
QL05p077133 Quercus lobata HOM05D000247 ORTHO05D000288 7.8e-14 80.1 76 51.3
QL93p0073_1220 Quercus lobata HOM05D000247 ORTHO05D000288 7.8e-14 80.1 76 51.3
TAR624G0987 Trochodendron aralioides HOM05D000247 ORTHO05D000288 7.8e-14 80.1 76 50.0
Ciclev10009896m.g Citrus clementina HOM05D000247 ORTHO05D000288 1.0e-13 79.7 71 56.3
Lj3g0009656 Lotus japonicus HOM05D000247 ORTHO05D000288 1.0e-13 79.7 76 51.3
Lj6g0021886 Lotus japonicus HOM05D000247 ORTHO05D000288 1.0e-13 79.7 68 57.4
Duzib192G0716 Durio zibethinus HOM05D000247 ORTHO05D000288 1.7e-13 79.0 68 52.9
Ciclev10017174m.g Citrus clementina HOM05D000247 ORTHO05D000288 3.9e-13 77.8 68 54.4
Cc02_g11760 Coffea canephora HOM05D000247 ORTHO05D000288 3.9e-13 77.8 76 51.3
Gohir.A05G167700 Gossypium hirsutum HOM05D000247 ORTHO05D000288 3.9e-13 77.8 68 52.9
THA.LOC104809517 Tarenaya hassleriana HOM05D000247 ORTHO05D000288 3.9e-13 77.8 69 53.6
GSVIVG01007337001 Vitis vinifera HOM05D000247 ORTHO05D000288 3.9e-13 77.8 67 56.7
Manes.16G017200 Manihot esculenta HOM05D000247 ORTHO05D000288 5.0e-13 77.4 68 52.9
PGR004G1780 Punica granatum HOM05D000247 ORTHO05D000288 5.0e-13 77.4 68 54.4
Ca_18843_v3 Cicer arietinum L. HOM05D000247 ORTHO05D000288 6.6e-13 77.0 69 53.6
MELO3C002508.2 Cucumis melo HOM05D000247 ORTHO05D000288 6.6e-13 77.0 76 47.4
Hma1.2p1_1682F.1_g297340 Hydrangea macrophylla HOM05D000247 ORTHO05D000288 6.6e-13 77.0 68 48.5
Hund23533 Selenicereus undatus HOM05D000247 ORTHO05D000288 6.6e-13 77.0 75 48.0
Peaxi162Scf00678g00047 Petunia axillaris HOM05D000247 ORTHO05D000288 8.6e-13 76.6 63 55.6
Potri.004G031700 Populus trichocarpa HOM05D000247 ORTHO05D000288 8.6e-13 76.6 76 50.0
Gohir.D05G170700 Gossypium hirsutum HOM05D000247 ORTHO05D000288 1.1e-12 76.3 68 51.5
Psat7g122160 Pisum sativum HOM05D000247 ORTHO05D000288 1.1e-12 76.3 76 48.7
Rhsim02G0114900 Rhododendron simsii HOM05D000247 ORTHO05D000288 1.1e-12 76.3 69 53.6
CAN.G569.62 Capsicum annuum HOM05D000247 ORTHO05D000288 1.5e-12 75.9 68 52.9
Gorai.009G175900 Gossypium raimondii HOM05D000247 ORTHO05D000288 1.5e-12 75.9 68 50.0
Medtr4g081380 Medicago truncatula HOM05D000247 ORTHO05D000288 1.5e-12 75.9 76 50.0
vmacro15839 Vaccinium macrocarpon HOM05D000247 ORTHO05D000288 1.5e-12 75.9 69 52.2
Glyma.12G136400 Glycine max HOM05D000247 ORTHO05D000288 2.5e-12 75.1 76 48.7
Actinidia05128 Actinidia chinensis HOM05D000247 ORTHO05D000288 3.3e-12 74.7 76 50.0
AL1G22630 Arabidopsis lyrata HOM05D000247 ORTHO05D000288 3.3e-12 74.7 67 53.7
PSO832G0793 Papaver somniferum HOM05D000247 ORTHO05D000288 3.3e-12 74.7 74 47.3
Peaxi162Scf00082g01211 Petunia axillaris HOM05D000247 ORTHO05D000288 3.3e-12 74.7 77 50.6
Sabra04G0018000 Salix brachista HOM05D000247 ORTHO05D000288 3.3e-12 74.7 76 47.4
BcaC07g41775 Brassica carinata HOM05D000247 ORTHO05D000288 4.3e-12 74.3 69 52.2
BolC8t52349H Brassica oleracea HOM05D000247 ORTHO05D000288 4.3e-12 74.3 69 52.2
BraA09t41790Z Brassica rapa HOM05D000247 ORTHO05D000288 4.3e-12 74.3 69 52.2
Cpa.g.sc81.10 Carica papaya HOM05D000247 ORTHO05D000288 4.3e-12 74.3 76 46.1
CsaV3_1G011310 Cucumis sativus L. HOM05D000247 ORTHO05D000288 4.3e-12 74.3 76 47.4
MBI18_g26663_MAGBIO Magnolia biondii HOM05D000247 ORTHO05D000288 4.3e-12 74.3 64 53.1
PSO210G3616 Papaver somniferum HOM05D000247 ORTHO05D000288 4.3e-12 74.3 74 48.6
Actinidia11833 Actinidia chinensis HOM05D000247 ORTHO05D000288 5.6e-12 73.9 76 46.1
Carub.0001s1114 Capsella rubella HOM05D000247 ORTHO05D000288 5.6e-12 73.9 67 52.2
AT1G11530 Arabidopsis thaliana HOM05D000247 ORTHO05D000288 7.3e-12 73.6 67 52.2
Thhalv10009112m.g Eutrema salsugineum HOM05D000247 ORTHO05D000288 7.3e-12 73.6 69 50.7
PGSC0003DMG400021716 Solanum tuberosum HOM05D000247 ORTHO05D000288 7.3e-12 73.6 68 52.9
Nitab4.5_0009680g0020 Nicotiana tabacum HOM05D000247 ORTHO05D000288 9.5e-12 73.2 77 46.8
Phvul.005G090900 Phaseolus vulgaris HOM05D000247 ORTHO05D000288 9.5e-12 73.2 71 47.9
C08p48160 Brassica napus HOM05D000247 ORTHO05D000288 1.2e-11 72.8 67 52.2
CARHR011800 Cardamine hirsuta HOM05D000247 ORTHO05D000288 1.2e-11 72.8 67 50.7
Nn1g06961 Nelumbo nucifera HOM05D000247 ORTHO05D000288 1.2e-11 72.8 76 47.4
Phvul.006G196500 Phaseolus vulgaris HOM05D000247 ORTHO05D000288 1.2e-11 72.8 72 51.4
Phvul.011G141400 Phaseolus vulgaris HOM05D000247 ORTHO05D000288 1.2e-11 72.8 76 47.4
Potri.011G031100 Populus trichocarpa HOM05D000247 ORTHO05D000288 1.2e-11 72.8 67 52.2
RcHm_v2.0_Chr5g0004481 Rosa chinensis HOM05D000247 ORTHO05D000288 1.2e-11 72.8 75 48.0
CSS0035900 Camellia sinensis var. sinensis HOM05D000247 ORTHO05D000288 1.6e-11 72.4 75 45.3
CSS0044574 Camellia sinensis var. sinensis HOM05D000247 ORTHO05D000288 1.6e-11 72.4 75 45.3
Solyc02g079960.3 Solanum lycopersicum HOM05D000247 ORTHO05D000288 1.6e-11 72.4 68 51.5
Sopen02g024710 Solanum pennellii HOM05D000247 ORTHO05D000288 1.6e-11 72.4 68 51.5
arahy.Tifrunner.gnm1.ann1.04AI4E Arachis hypogaea HOM05D000247 ORTHO05D000288 2.1e-11 72.0 70 51.4
arahy.Tifrunner.gnm1.ann1.W0U6J5 Arachis hypogaea HOM05D000247 ORTHO05D000288 2.1e-11 72.0 70 51.4
Glyma.12G215000 Glycine max HOM05D000247 ORTHO05D000288 2.1e-11 72.0 69 47.8
Sed0010392 Sechium edule HOM05D000247 ORTHO05D000288 2.1e-11 72.0 69 46.4
TPR.G25899 Trifolium pratense HOM05D000247 ORTHO05D000288 2.1e-11 72.0 76 50.0
VMungo1080G1163 Vigna mungo HOM05D000247 ORTHO05D000288 2.1e-11 72.0 71 46.5
MELO3C018122.2 Cucumis melo HOM05D000247 ORTHO05D000288 2.8e-11 71.6 71 46.5
Actinidia05127 Actinidia chinensis HOM05D000247 ORTHO05D000288 3.6e-11 71.2 76 47.4
Glyma.06G266700 Glycine max HOM05D000247 ORTHO05D000288 3.6e-11 71.2 76 46.1
Psat5g249480 Pisum sativum HOM05D000247 ORTHO05D000288 3.6e-11 71.2 69 44.9
TWI38G1486 Tripterygium wilfordii HOM05D000247 ORTHO05D000288 3.6e-11 71.2 76 44.7
VMungo0540G0926 Vigna mungo HOM05D000247 ORTHO05D000288 3.6e-11 71.2 72 50.0
MSTRG.12952 Avicennia marina HOM05D000247 ORTHO05D000288 4.7e-11 70.9 76 44.7
Lalb_Chr01g0006131 Lupinus albus HOM05D000247 ORTHO05D000288 4.7e-11 70.9 76 44.7
PGR004G0688 Punica granatum HOM05D000247 ORTHO05D000288 4.7e-11 70.9 64 51.6
Sed0000067 Sechium edule HOM05D000247 ORTHO05D000288 4.7e-11 70.9 76 44.7
Cpa.g.sc97.79 Carica papaya HOM05D000247 ORTHO05D000288 6.1e-11 70.5 64 53.1
vmacro11771 Vaccinium macrocarpon HOM05D000247 ORTHO05D000288 8.0e-11 70.1 68 48.5
Lalb_Chr18g0060121 Lupinus albus HOM05D000247 ORTHO05D000288 1.0e-10 69.7 64 57.8
ClCG05G014810 Citrullus lanatus HOM05D000247 ORTHO05D000288 1.4e-10 69.3 69 46.4
Glyma.13G286600 Glycine max HOM05D000247 ORTHO05D000288 1.4e-10 69.3 69 46.4
Medtr2g010750 Medicago truncatula HOM05D000247 ORTHO05D000288 1.4e-10 69.3 73 49.3
Sp1g10150 Schrenkiella parvula HOM05D000247 ORTHO05D000288 1.4e-10 69.3 76 44.7
MD05G1336400 Malus domestica HOM05D000247 ORTHO05D000288 1.8e-10 68.9 68 44.1
Medtr2g082590 Medicago truncatula HOM05D000247 ORTHO05D000288 1.8e-10 68.9 89 38.2
Nitab4.5_0002345g0090 Nicotiana tabacum HOM05D000247 ORTHO05D000288 2.3e-10 68.6 77 45.5
CANSAT56G0019 Cannabis sativa HOM05D000247 ORTHO05D000288 3.1e-10 68.2 68 48.5
Glyma.13G251200 Glycine max HOM05D000247 ORTHO05D000288 3.1e-10 68.2 76 46.1
Lj3g0003664 Lotus japonicus HOM05D000247 ORTHO05D000288 3.1e-10 68.2 76 42.1
FvH4_3g02911 Fragaria vesca HOM05D000247 ORTHO05D000288 4.0e-10 67.8 68 51.5
Atru.chr2.3193 Acer truncatum HOM05D000247 ORTHO05D000288 5.2e-10 67.4 66 54.5
EL10Ac8g19917 Beta vulgaris HOM05D000247 ORTHO05D000288 5.2e-10 67.4 75 41.3
BcaB08g37399 Brassica carinata HOM05D000247 ORTHO05D000288 6.8e-10 67.0 69 47.8
BcaC07g41779 Brassica carinata HOM05D000247 ORTHO05D000288 6.8e-10 67.0 69 47.8
Ca_00205_v3 Cicer arietinum L. HOM05D000247 ORTHO05D000288 6.8e-10 67.0 68 51.5
TPR.G8682 Trifolium pratense HOM05D000247 ORTHO05D000288 6.8e-10 67.0 73 42.5
Eucgr.D00853 Eucalyptus grandis HOM05D000247 ORTHO05D000288 8.9e-10 66.6 68 48.5
MD10G1311900 Malus domestica HOM05D000247 ORTHO05D000288 8.9e-10 66.6 68 47.1
TPR.G32664 Trifolium pratense HOM05D000247 ORTHO05D000288 8.9e-10 66.6 68 50.0
FAN25G3292 Fragaria x ananassa HOM05D000247 ORTHO05D000288 1.2e-09 66.2 66 51.5
arahy.Tifrunner.gnm1.ann1.I0I8XZ Arachis hypogaea HOM05D000247 ORTHO05D000288 1.5e-09 65.9 76 43.4
SGA_v2.0_scaffold9G05024 Striga asiatica HOM05D000247 ORTHO05D000288 1.5e-09 65.9 76 39.5
Aa31LG1G3230 Aethionema arabicum HOM05D000247 ORTHO05D000288 2.0e-09 65.5 69 42.0
Glyma.15G063100 Glycine max HOM05D000247 ORTHO05D000288 2.6e-09 65.1 72 45.8
Lalb_Chr22g0357091 Lupinus albus HOM05D000247 ORTHO05D000288 3.4e-09 64.7 76 43.4
arahy.Tifrunner.gnm1.ann1.7ZYB2E Arachis hypogaea HOM05D000247 ORTHO05D000288 4.4e-09 64.3 76 42.1
HPP92_005902 Vanilla planifolia HOM05D000247 ORTHO05D000288 9.8e-09 63.2 68 44.1
CDE01G0748 Ceratophyllum demersum HOM05D000247 ORTHO05D000288 1.7e-08 62.4 67 44.8
Migut.H01863 Erythranthe guttata HOM05D000247 ORTHO05D000288 1.7e-08 62.4 76 43.4
HanXRQChr05g0130751 Helianthus annuus HOM05D000247 ORTHO05D000288 2.9e-08 61.6 68 42.6
Lsat_1_v5_gn_7_18261 Lactuca sativa HOM05D000141 ORTHO05D001968 2.9e-08 61.6 76 40.8
ATR0762G027 Amborella trichopoda HOM05D000247 ORTHO05D000288 6.4e-08 60.5 66 43.9
Lsat_1_v5_gn_5_4600 Lactuca sativa HOM05D000247 ORTHO05D000288 1.1e-07 59.7 70 42.9
DCAR_004175 Daucus carota HOM05D000247 ORTHO05D000288 1.9e-07 58.9 75 37.3
AUR62012586 Chenopodium quinoa HOM05D000247 ORTHO05D000288 2.4e-07 58.5 71 38.0
ECA236G1853 Erigeron canadensis HOM05D001139 ORTHO05D000936 2.4e-07 58.5 76 39.5
SEGI_28085 Sequoiadendron giganteum HOM05D000247 ORTHO05D000288 5.4e-07 57.4 70 42.9
Sabra11G0018600 Salix brachista HOM05D000247 ORTHO05D000288 7.0e-07 57.0 69 44.9
Sabra11G0024500 Salix brachista HOM05D000247 ORTHO05D000288 7.0e-07 57.0 69 44.9
Ah.14g088470 Amaranthus hybridus HOM05D000141 ORTHO05D001968 1.6e-06 55.8 71 38.0
Os04g0629500 Oryza sativa ssp. japonica HOM05D000247 ORTHO05D000288 4.6e-06 54.3 66 37.9
AUR62014615 Chenopodium quinoa HOM05D000247 ORTHO05D000288 6.0e-06 53.9 71 35.2
VMungo1127G0729 Vigna mungo HOM05D007793 ORTHO05D000013 6.0e-06 53.9 75 40.0


User provided reference genes

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