Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Sabra11G0117400 Salix brachista HOM05D003841 ORTHO05D004602 1.3e-160 569.7 297 100.0
Potri.011G130000 Populus trichocarpa HOM05D003841 ORTHO05D004602 2.7e-97 359.4 273 76.9
Potri.001G410100 Populus trichocarpa HOM05D003841 ORTHO05D004602 1.3e-83 313.9 272 67.3
Sabra16G0281100 Salix brachista HOM05D003841 ORTHO05D004602 4.2e-82 308.9 278 66.9
Manes.15G079400 Manihot esculenta HOM05D003841 ORTHO05D004602 1.7e-54 217.2 286 47.9
Dinv02831 Davidia involucrata HOM05D003841 ORTHO05D004602 6.1e-41 172.2 285 44.2
QL08p014515 Quercus lobata HOM05D003841 ORTHO05D004602 1.2e-39 167.9 276 47.1
CSS0048456 Camellia sinensis var. sinensis HOM05D003841 ORTHO05D004602 2.6e-39 166.8 274 43.8
Dinv22328 Davidia involucrata HOM05D003841 ORTHO05D004602 7.5e-39 165.2 285 43.2
TWI39G0875 Tripterygium wilfordii HOM05D003841 ORTHO05D004602 2.4e-37 160.2 287 41.1
Ciclev10008955m.g Citrus clementina HOM05D003841 ORTHO05D004602 1.2e-36 157.9 285 42.1
CiPaw.12G124700 Carya illinoinensis HOM05D003841 ORTHO05D004602 6.5e-35 152.1 274 42.3
TWI38G0390 Tripterygium wilfordii HOM05D003841 ORTHO05D004602 6.5e-35 152.1 291 39.5
Cc05_g12980 Coffea canephora HOM05D003841 ORTHO05D004602 8.5e-35 151.8 280 42.9
CSS0046033 Camellia sinensis var. sinensis HOM05D003841 ORTHO05D004602 1.5e-34 151.0 280 40.7
Duzib213G0276 Durio zibethinus HOM05D003841 ORTHO05D004602 2.5e-34 150.2 276 40.9
COL.COLO4_09535 Corchorus olitorius HOM05D003841 ORTHO05D004602 4.2e-34 149.4 283 42.0
Gohir.A11G281600 Gossypium hirsutum HOM05D003841 ORTHO05D004602 2.3e-32 143.7 284 40.1
Thecc.07G059100 Theobroma cacao HOM05D003841 ORTHO05D004602 5.2e-32 142.5 278 41.7
Eucgr.F03390 Eucalyptus grandis HOM05D003841 ORTHO05D004602 1.2e-31 141.4 282 41.5
RhsimUnG0254800 Rhododendron simsii HOM05D003841 ORTHO05D004602 2.0e-31 140.6 292 38.7
Gorai.007G317200 Gossypium raimondii HOM05D003841 ORTHO05D004602 2.6e-31 140.2 284 39.4
Duzib170G0031 Durio zibethinus HOM05D003841 ORTHO05D004602 3.4e-31 139.8 280 38.6
Actinidia35303 Actinidia chinensis HOM05D003841 ORTHO05D004602 9.8e-31 138.3 304 38.5
Gohir.D11G294200 Gossypium hirsutum HOM05D003841 ORTHO05D004602 9.8e-31 138.3 284 38.7
GSVIVG01014549001 Vitis vinifera HOM05D003841 ORTHO05D004602 9.8e-31 138.3 213 45.5
Gohir.A13G142900 Gossypium hirsutum HOM05D003841 ORTHO05D004602 6.3e-30 135.6 275 39.6
EL10Ac4g08014 Beta vulgaris HOM05D003841 ORTHO05D004602 8.3e-30 135.2 270 42.6
arahy.Tifrunner.gnm1.ann1.GYU1HX Arachis hypogaea HOM05D003841 ORTHO05D004602 1.1e-29 134.8 276 37.0
arahy.Tifrunner.gnm1.ann1.SIF99T Arachis hypogaea HOM05D003841 ORTHO05D004602 2.4e-29 133.7 276 37.0
CARHR267820 Cardamine hirsuta HOM05D003841 ORTHO05D004602 4.1e-29 132.9 246 42.3
Nitab4.5_0003052g0050 Nicotiana tabacum HOM05D003841 ORTHO05D004602 5.4e-29 132.5 281 42.3
THA.LOC104799894 Tarenaya hassleriana HOM05D003841 ORTHO05D004602 7.0e-29 132.1 275 40.7
TAR271G0005 Trochodendron aralioides HOM05D003841 ORTHO05D004602 7.0e-29 132.1 291 37.8
Lj8A163G39 Lonicera japonica HOM05D003841 ORTHO05D004602 9.1e-29 131.7 276 39.9
Glyma.06G262900 Glycine max HOM05D003841 ORTHO05D004602 1.2e-28 131.3 292 39.0
Nitab4.5_0000552g0100 Nicotiana tabacum HOM05D003841 ORTHO05D004602 1.2e-28 131.3 285 40.7
Lalb_Chr22g0357311 Lupinus albus HOM05D003841 ORTHO05D004602 2.7e-28 130.2 288 37.2
Gohir.D13G147500 Gossypium hirsutum HOM05D003841 ORTHO05D004602 3.5e-28 129.8 275 38.9
Lj1A861T58 Lonicera japonica HOM05D003841 ORTHO05D004602 3.5e-28 129.8 279 36.9
Hund23360 Selenicereus undatus HOM05D003841 ORTHO05D004602 3.5e-28 129.8 270 37.0
Gorai.013G165300 Gossypium raimondii HOM05D003841 ORTHO05D004602 4.5e-28 129.4 278 38.8
TAR627G0073 Trochodendron aralioides HOM05D003841 ORTHO05D004602 7.7e-28 128.6 291 35.4
Actinidia10692 Actinidia chinensis HOM05D003841 ORTHO05D004602 2.3e-27 127.1 289 37.7
Aa31LG3G10490 Aethionema arabicum HOM05D003841 ORTHO05D004602 3.8e-27 126.3 279 39.1
MD11G1230100 Malus domestica HOM05D003841 ORTHO05D004602 3.8e-27 126.3 252 38.1
Nn1g06911 Nelumbo nucifera HOM05D003841 ORTHO05D004602 3.8e-27 126.3 287 38.0
TAR271G0006 Trochodendron aralioides HOM05D003841 ORTHO05D004602 3.8e-27 126.3 292 37.7
Peaxi162Scf01365g00027 Petunia axillaris HOM05D003841 ORTHO05D004602 1.1e-26 124.8 290 39.3
Cfa020471 Carpinus fangiana HOM05D003841 ORTHO05D004602 1.5e-26 124.4 271 39.1
Sp6g16510 Schrenkiella parvula HOM05D003841 ORTHO05D004602 4.2e-26 122.9 245 43.7
VMungo1127G0850 Vigna mungo HOM05D003841 ORTHO05D004602 4.2e-26 122.9 268 37.7
Phvul.011G146700 Phaseolus vulgaris HOM05D003841 ORTHO05D004602 5.5e-26 122.5 269 37.2
Glyma.12G139800 Glycine max HOM05D003841 ORTHO05D004602 9.5e-26 121.7 303 37.0
AUR62029272 Chenopodium quinoa HOM05D003841 ORTHO05D004602 1.6e-25 120.9 267 39.7
vmacro11787 Vaccinium macrocarpon HOM05D003841 ORTHO05D004602 2.1e-25 120.6 274 35.8
CANSAT11G1059 Cannabis sativa HOM05D003841 ORTHO05D004602 3.6e-25 119.8 273 38.1
Oeu005438.1 Olea europaea HOM05D003841 ORTHO05D004602 4.7e-25 119.4 279 38.0
Rhsim06G0190700 Rhododendron simsii HOM05D003841 ORTHO05D004602 6.1e-25 119.0 276 37.7
AUR62041149 Chenopodium quinoa HOM05D003841 ORTHO05D004602 8.0e-25 118.6 270 37.8
FAN11G1553 Fragaria x ananassa HOM05D003841 ORTHO05D004602 8.0e-25 118.6 270 37.8
Haze_09572 Corylus avellana HOM05D003841 ORTHO05D004602 1.0e-24 118.2 238 41.2
Sopen07g032000 Solanum pennellii HOM05D003841 ORTHO05D004602 1.0e-24 118.2 285 39.6
Thhalv10014255m.g Eutrema salsugineum HOM05D003841 ORTHO05D004602 1.4e-24 117.9 243 43.6
Rhsim06G0189000 Rhododendron simsii HOM05D003841 ORTHO05D004602 1.4e-24 117.9 276 37.7
Ah.06g183230 Amaranthus hybridus HOM05D003841 ORTHO05D004602 1.8e-24 117.5 267 36.7
Lsat_1_v5_gn_7_107821 Lactuca sativa HOM05D003841 ORTHO05D004602 2.3e-24 117.1 288 36.8
AL8G29910 Arabidopsis lyrata HOM05D003841 ORTHO05D004602 3.0e-24 116.7 234 43.6
A10p11770 Brassica napus HOM05D003841 ORTHO05D004602 5.2e-24 115.9 269 40.1
Hund02157 Selenicereus undatus HOM05D003841 ORTHO05D004602 6.8e-24 115.5 271 39.1
ClCG05G014990 Citrullus lanatus HOM05D003841 ORTHO05D004602 1.2e-23 114.8 225 40.0
BraA10t43276Z Brassica rapa HOM05D003841 ORTHO05D004602 1.5e-23 114.4 266 39.8
MD03G1215500 Malus domestica HOM05D003841 ORTHO05D004602 1.5e-23 114.4 272 36.4
Sabra16G0276700 Salix brachista HOM05D006433 ORTHO05D005382 2.0e-23 114.0 101 68.3
SGA_v2.0_scaffold9G05000 Striga asiatica HOM05D003841 ORTHO05D004602 2.0e-23 114.0 269 39.4
Carub.0008s1482 Capsella rubella HOM05D003841 ORTHO05D004602 3.4e-23 113.2 227 40.1
Oeu052335.1 Olea europaea HOM05D003841 ORTHO05D004602 3.4e-23 113.2 282 34.8
MSTRG.14400 Avicennia marina HOM05D003841 ORTHO05D004602 4.4e-23 112.8 274 38.3
Lalb_Chr01g0006261 Lupinus albus HOM05D003841 ORTHO05D004602 4.4e-23 112.8 276 37.0
Solyc07g063870.3 Solanum lycopersicum HOM05D003841 ORTHO05D004602 4.4e-23 112.8 283 39.6
Psat7g160280 Pisum sativum HOM05D003841 ORTHO05D004602 7.5e-23 112.1 274 36.1
FvH4_3g21510 Fragaria vesca HOM05D003841 ORTHO05D004602 9.8e-23 111.7 274 36.9
BcaC04g20329 Brassica carinata HOM05D003841 ORTHO05D004602 2.2e-22 110.5 226 41.2
MSTRG.6876 Avicennia marina HOM05D003841 ORTHO05D004602 3.7e-22 109.8 271 35.1
Lj3g0010893 Lotus japonicus HOM05D003841 ORTHO05D004602 4.9e-22 109.4 286 35.7
AT5G54540 Arabidopsis thaliana HOM05D003841 ORTHO05D004602 6.3e-22 109.0 235 42.1
HanXRQChr11g0332121 Helianthus annuus HOM05D003841 ORTHO05D004602 6.3e-22 109.0 294 36.7
BcaB08g35813 Brassica carinata HOM05D003841 ORTHO05D004602 1.1e-21 108.2 234 40.2
C09p44880 Brassica napus HOM05D003841 ORTHO05D004602 1.1e-21 108.2 226 41.6
FAN21G0547 Fragaria x ananassa HOM05D003841 ORTHO05D004602 1.1e-21 108.2 275 36.4
Lj3g0010292 Lotus japonicus HOM05D003841 ORTHO05D004602 1.4e-21 107.8 271 37.6
vmacro09595 Vaccinium macrocarpon HOM05D003841 ORTHO05D004602 1.8e-21 107.5 417 30.7
Migut.H01878 Erythranthe guttata HOM05D003841 ORTHO05D004602 3.2e-21 106.7 277 36.5
Prupe.4G197300 Prunus persica HOM05D003841 ORTHO05D004602 5.4e-21 105.9 297 34.0
Sed0013156 Sechium edule HOM05D003841 ORTHO05D004602 5.4e-21 105.9 223 39.5
C02p16910 Brassica napus HOM05D003841 ORTHO05D004602 7.0e-21 105.5 232 40.5
Glyma.13G284700 Glycine max HOM05D003841 ORTHO05D004602 7.0e-21 105.5 276 35.9
TAR623G1765 Trochodendron aralioides HOM05D003841 ORTHO05D004602 7.0e-21 105.5 286 33.6
TPR.G34029 Trifolium pratense HOM05D003841 ORTHO05D004602 1.2e-20 104.8 271 36.9
MELO3C018156.2 Cucumis melo HOM05D003841 ORTHO05D004602 1.6e-20 104.4 228 38.2
ECA236G3199 Erigeron canadensis HOM05D003841 ORTHO05D004602 1.6e-20 104.4 293 34.8
Cpa.g.sc80.126 Carica papaya HOM05D003841 ORTHO05D004602 2.0e-20 104.0 195 45.6
PGSC0003DMG400019273 Solanum tuberosum HOM05D003841 ORTHO05D000515 2.0e-20 104.0 275 37.1
A02p10210 Brassica napus HOM05D003841 ORTHO05D004602 2.7e-20 103.6 245 39.2
BolC9t57359H Brassica oleracea HOM05D003841 ORTHO05D004602 2.7e-20 103.6 271 38.4
Medtr4g081550 Medicago truncatula HOM05D003841 ORTHO05D004602 7.8e-20 102.1 270 35.6
BraA02t06092Z Brassica rapa HOM05D003841 ORTHO05D004602 1.3e-19 101.3 244 38.9
arahy.Tifrunner.gnm1.ann1.SKE74K Arachis hypogaea HOM05D003841 ORTHO05D004602 1.7e-19 100.9 274 35.8
Ca_18832_v3 Cicer arietinum L. HOM05D003841 ORTHO05D004602 1.7e-19 100.9 272 36.0
Ca_30091_v3 Cicer arietinum L. HOM05D003841 ORTHO05D004602 1.7e-19 100.9 272 36.0
CsaV3_3G022650 Cucumis sativus L. HOM05D003841 ORTHO05D004602 3.9e-19 99.8 286 35.3
Migut.M01831 Erythranthe guttata HOM05D003841 ORTHO05D004602 3.9e-19 99.8 267 33.7
DCAR_010006 Daucus carota HOM05D003841 ORTHO05D004602 5.0e-19 99.4 264 35.6
FAN25G3758 Fragaria x ananassa HOM05D003841 ORTHO05D004602 8.6e-19 98.6 269 36.8
FAN16G3040 Fragaria x ananassa HOM05D003841 ORTHO05D004602 1.9e-18 97.4 274 35.4
Glyma.12G216500 Glycine max HOM05D003841 ORTHO05D004602 1.9e-18 97.4 278 34.5
SalBow7G4379 Salvia bowleyana HOM05D003841 ORTHO05D004602 1.9e-18 97.4 270 35.9
Actinidia05162 Actinidia chinensis HOM05D003841 ORTHO05D004602 4.3e-18 96.3 308 32.8
PSO541G4862 Papaver somniferum HOM05D003841 ORTHO05D004602 2.1e-17 94.0 286 31.5
PSO675G5063 Papaver somniferum HOM05D003841 ORTHO05D004602 4.7e-17 92.8 284 31.0
Sc03g0009430 Simmondsia chinensis HOM05D003841 ORTHO05D004602 1.0e-16 91.7 270 33.7
arahy.Tifrunner.gnm1.ann1.SRRR95 Arachis hypogaea HOM05D003841 ORTHO05D004602 4.0e-16 89.7 279 35.8
Cpa.g.c47761 Carica papaya HOM05D003841 ORTHO05D004602 5.2e-16 89.4 133 52.6
SGA_v2.0_scaffold70G23570 Striga asiatica HOM05D003841 ORTHO05D004602 1.2e-15 88.2 263 31.6
DCAR_022502 Daucus carota HOM05D003841 ORTHO05D004602 1.5e-15 87.8 270 32.2
CAN.G64.40 Capsicum annuum HOM05D003841 ORTHO05D004602 2.6e-15 87.0 142 44.4
RcHm_v2.0_Chr5g0036951 Rosa chinensis HOM05D003841 ORTHO05D004602 2.6e-15 87.0 188 36.7
Cfa021072 Carpinus fangiana HOM05D003841 ORTHO05D004602 2.2e-14 84.0 119 51.3
ATR0804G047 Amborella trichopoda HOM05D003841 ORTHO05D004602 6.4e-14 82.4 293 29.7
ClCG10G006140 Citrullus lanatus HOM05D003841 ORTHO05D004602 1.9e-13 80.9 224 31.2
Zm00001eb171810 Zea mays HOM05D003841 ORTHO05D004602 5.4e-13 79.3 279 28.7
Os08g0179900 Oryza sativa ssp. japonica HOM05D003841 ORTHO05D004602 2.0e-12 77.4 214 30.8
Zm00001eb413050 Zea mays HOM05D003841 ORTHO05D004602 2.7e-12 77.0 287 30.0
unitig_899.g15555 Utricularia gibba HOM05D003841 ORTHO05D004602 7.8e-12 75.5 272 30.1
Gohir.A11G281650 Gossypium hirsutum HOM05D003841 ORTHO05D004602 1.0e-11 75.1 272 29.8
BcaB05g22143 Brassica carinata HOM05D003841 ORTHO05D004602 1.3e-11 74.7 217 32.3
Gorai.007G317300 Gossypium raimondii HOM05D003841 ORTHO05D004602 1.3e-11 74.7 282 28.4
CDE05G3666 Ceratophyllum demersum HOM05D003841 ORTHO05D004602 1.7e-11 74.3 276 28.3
Mapoly0042s0124 Marchantia polymorpha HOM05D002766 ORTHO05D002809 5.0e-11 72.8 249 28.9
Gohir.D11G294233 Gossypium hirsutum HOM05D003841 ORTHO05D004602 8.6e-11 72.0 282 28.0
Oeu052334.1 Olea europaea HOM05D003841 ORTHO05D004602 1.5e-10 71.2 159 34.6
MBI18_g38396_MAGBIO Magnolia biondii HOM05D003841 ORTHO05D004602 4.3e-10 69.7 252 27.8
HPP92_004148 Vanilla planifolia HOM05D003841 ORTHO05D004602 4.3e-10 69.7 281 29.9
CAN.G952.3 Capsicum annuum HOM05D003841 ORTHO05D004602 5.6e-10 69.3 190 38.9
Sed0016497 Sechium edule HOM05D003841 ORTHO05D004602 7.3e-10 68.9 237 32.5
Aqoxy1G03844 Aquilegia oxysepala HOM05D003841 ORTHO05D004602 1.2e-09 68.2 299 30.4
CAN.G1160.11 Capsicum annuum HOM05D003841 ORTHO05D004602 1.6e-09 67.8 248 28.6
Oeu052339.1 Olea europaea HOM05D003841 ORTHO05D004602 8.0e-09 65.5 144 34.7
unitig_746.g26819 Utricularia gibba HOM05D003841 ORTHO05D004602 8.0e-09 65.5 214 29.9
DCAR_008683 Daucus carota HOM05D003841 ORTHO05D004602 1.8e-08 64.3 228 32.5
PSO384G0968 Papaver somniferum HOM05D003841 ORTHO05D004602 4.0e-08 63.2 295 27.8
CDE05G3612 Ceratophyllum demersum HOM05D003841 ORTHO05D004602 8.9e-08 62.0 255 29.4
MELO3C016604.2 Cucumis melo HOM05D003841 ORTHO05D004602 1.5e-07 61.2 216 29.2
Ah.04g165190 Amaranthus hybridus HOM05D003841 ORTHO05D004602 2.6e-07 60.5 207 30.9
SEGI_16254 Sequoiadendron giganteum HOM05D002766 ORTHO05D002809 3.4e-07 60.1 265 27.5
Oeu052338.1 Olea europaea HOM05D003841 ORTHO05D004602 5.8e-07 59.3 125 36.8
PSO339G6399 Papaver somniferum HOM05D003841 ORTHO05D004602 1.7e-06 57.8 297 25.9
Pp3c17_23830 Physcomitrium patens HOM05D039964 ORTHO05D002809 1.7e-06 57.8 251 23.9
VMungo1080G1564 Vigna mungo HOM05D003841 ORTHO05D004602 2.2e-06 57.4 197 26.9
CAN.G22.51 Capsicum annuum HOM05D000121 ORTHO05D000102 4.9e-06 56.2 133 36.1
MBI04_g09526_MAGBIO Magnolia biondii HOM05D002766 ORTHO05D002809 4.9e-06 56.2 225 28.4
HPP92_005894 Vanilla planifolia HOM05D003841 ORTHO05D004602 6.4e-06 55.8 272 25.7


User provided reference genes

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