Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Sabra11G0104500 Salix brachista HOM05D003815 ORTHO05D004580 5.1e-165 584.3 294 100.0
Potri.011G120100 Populus trichocarpa HOM05D003815 ORTHO05D004580 1.9e-159 565.8 294 95.9
Sabra16G0263000 Salix brachista HOM05D003815 ORTHO05D004580 3.2e-151 538.5 294 91.8
Potri.001G400900 Populus trichocarpa HOM05D003815 ORTHO05D004580 8.2e-147 523.9 290 90.0
TWI38G0676 Tripterygium wilfordii HOM05D003815 ORTHO05D004580 1.3e-144 516.5 294 86.1
AL1G61340 Arabidopsis lyrata HOM05D003815 ORTHO05D004580 3.8e-144 515.0 294 86.4
Ciclev10009061m.g Citrus clementina HOM05D003815 ORTHO05D004580 3.2e-143 511.9 293 86.7
Manes.03G110800 Manihot esculenta HOM05D003815 ORTHO05D004580 4.2e-143 511.5 295 87.8
Thhalv10011698m.g Eutrema salsugineum HOM05D003815 ORTHO05D004580 9.4e-143 510.4 294 85.4
A08p01870 Brassica napus HOM05D003815 ORTHO05D004580 2.7e-142 508.8 290 85.9
BcaB02g10966 Brassica carinata HOM05D003815 ORTHO05D004580 3.6e-142 508.4 294 84.4
Sp1g39560 Schrenkiella parvula HOM05D003815 ORTHO05D004580 3.6e-142 508.4 294 84.7
Carub.0001s4215 Capsella rubella HOM05D003815 ORTHO05D004580 4.6e-142 508.1 294 85.4
AT1G53000 Arabidopsis thaliana HOM05D003815 ORTHO05D004580 6.1e-142 507.7 290 85.9
Gohir.A04G029700 Gossypium hirsutum HOM05D003815 ORTHO05D004580 6.1e-142 507.7 290 86.2
BcaC01g01350 Brassica carinata HOM05D003815 ORTHO05D004580 1.0e-141 506.9 285 86.3
C03p90950 Brassica napus HOM05D003815 ORTHO05D004580 1.0e-141 506.9 285 86.3
BolC3t21419H Brassica oleracea HOM05D003815 ORTHO05D004580 1.0e-141 506.9 285 86.3
Eucgr.F01118 Eucalyptus grandis HOM05D003815 ORTHO05D004580 1.4e-141 506.5 303 83.8
BraA08t32239Z Brassica rapa HOM05D003815 ORTHO05D004580 1.8e-141 506.1 285 86.3
QL08p021520 Quercus lobata HOM05D003815 ORTHO05D004580 2.3e-141 505.8 296 84.5
TWI38G0767 Tripterygium wilfordii HOM05D003815 ORTHO05D004580 3.0e-141 505.4 299 83.3
QL05p086088 Quercus lobata HOM05D003815 ORTHO05D004580 6.7e-141 504.2 296 84.5
THA.LOC104818073 Tarenaya hassleriana HOM05D003815 ORTHO05D004580 6.7e-141 504.2 296 84.8
BcaB04g17128 Brassica carinata HOM05D003815 ORTHO05D004580 8.8e-141 503.8 285 85.6
Atru.chr2.2652 Acer truncatum HOM05D003815 ORTHO05D004580 2.5e-140 502.3 292 85.3
A05p18730 Brassica napus HOM05D003815 ORTHO05D004580 2.5e-140 502.3 288 84.7
EL10Ac4g08152 Beta vulgaris HOM05D003815 ORTHO05D004580 4.3e-140 501.5 296 85.5
Dinv04311 Davidia involucrata HOM05D003815 ORTHO05D004580 4.3e-140 501.5 298 84.9
Gorai.009G389800 Gossypium raimondii HOM05D003815 ORTHO05D004580 5.7e-140 501.1 297 84.2
C06p14350 Brassica napus HOM05D003815 ORTHO05D004580 9.7e-140 500.4 288 85.1
Gohir.D05G357300 Gossypium hirsutum HOM05D003815 ORTHO05D004580 9.7e-140 500.4 297 84.2
PGSC0003DMG400025035 Solanum tuberosum HOM05D003815 ORTHO05D004580 1.3e-139 500.0 295 84.1
PGR083G0800 Punica granatum HOM05D003815 ORTHO05D004580 2.8e-139 498.8 301 83.4
TAR629G1246 Trochodendron aralioides HOM05D003815 ORTHO05D004580 3.7e-139 498.4 296 85.1
CSS0007181 Camellia sinensis var. sinensis HOM05D003815 ORTHO05D004580 4.8e-139 498.0 303 82.2
Cfa020596 Carpinus fangiana HOM05D003815 ORTHO05D004580 4.8e-139 498.0 300 82.7
Lalb_Chr03g0030621 Lupinus albus HOM05D003815 ORTHO05D004580 4.8e-139 498.0 284 85.2
MD03G1226400 Malus domestica HOM05D003815 ORTHO05D004580 4.8e-139 498.0 290 86.2
Phvul.011G157900 Phaseolus vulgaris HOM05D003815 ORTHO05D004580 6.3e-139 497.7 302 82.1
Thecc.07G083700 Theobroma cacao HOM05D003815 ORTHO05D004580 6.3e-139 497.7 299 82.3
Glyma.06G245100 Glycine max HOM05D003815 ORTHO05D004580 1.1e-138 496.9 306 81.7
Glyma.12G151500 Glycine max HOM05D003815 ORTHO05D004580 1.1e-138 496.9 307 80.8
CSS0031480 Camellia sinensis var. sinensis HOM05D003815 ORTHO05D004580 1.8e-138 496.1 307 81.1
Prupe.4G183000 Prunus persica HOM05D003815 ORTHO05D004580 2.4e-138 495.7 298 84.2
RcHm_v2.0_Chr5g0033991 Rosa chinensis HOM05D003815 ORTHO05D004580 2.4e-138 495.7 288 86.5
Sopen10g002890 Solanum pennellii HOM05D003815 ORTHO05D004580 2.4e-138 495.7 295 83.1
vmacro11847 Vaccinium macrocarpon HOM05D003815 ORTHO05D004580 3.1e-138 495.4 283 85.2
Nn1g06558 Nelumbo nucifera HOM05D003815 ORTHO05D004580 4.1e-138 495.0 298 83.6
CARHR043220 Cardamine hirsuta HOM05D003815 ORTHO05D004580 5.3e-138 494.6 294 83.3
DCAR_014380 Daucus carota HOM05D003815 ORTHO05D004580 6.9e-138 494.2 292 85.3
MD11G1244700 Malus domestica HOM05D003815 ORTHO05D004580 9.1e-138 493.8 296 84.1
GSVIVG01014351001 Vitis vinifera HOM05D003815 ORTHO05D004580 9.1e-138 493.8 298 81.5
Aa31LG10G2090 Aethionema arabicum HOM05D003815 ORTHO05D004580 1.2e-137 493.4 294 82.3
Nitab4.5_0000207g0160 Nicotiana tabacum HOM05D003815 ORTHO05D004580 1.2e-137 493.4 294 82.3
FAN16G0735 Fragaria x ananassa HOM05D003815 ORTHO05D004580 2.6e-137 492.3 283 85.9
Nitab4.5_0001551g0080 Nicotiana tabacum HOM05D003815 ORTHO05D004580 2.6e-137 492.3 280 84.3
Duzib170G0119 Durio zibethinus HOM05D003815 ORTHO05D004580 3.4e-137 491.9 296 82.4
Lj3g0026961 Lotus japonicus HOM05D003815 ORTHO05D004580 3.4e-137 491.9 302 80.5
Sc07g0002580 Simmondsia chinensis HOM05D003815 ORTHO05D004580 4.5e-137 491.5 279 85.7
FAN11G0414 Fragaria x ananassa HOM05D003815 ORTHO05D004580 7.7e-137 490.7 283 85.5
BraA05t20769Z Brassica rapa HOM05D003815 ORTHO05D004580 1.0e-136 490.3 277 85.2
MELO3C016515.2 Cucumis melo HOM05D003815 ORTHO05D004580 1.0e-136 490.3 298 82.2
PGR004G1265 Punica granatum HOM05D003815 ORTHO05D004580 1.0e-136 490.3 300 81.3
COL.COLO4_09397 Corchorus olitorius HOM05D003815 ORTHO05D004580 1.3e-136 490.0 275 86.9
Nitab4.5_0002383g0120 Nicotiana tabacum HOM05D003815 ORTHO05D004580 1.3e-136 490.0 298 81.5
Nitab4.5_0003688g0100 Nicotiana tabacum HOM05D003815 ORTHO05D004580 1.3e-136 490.0 279 84.2
Solyc10g006980.3 Solanum lycopersicum HOM05D003815 ORTHO05D004580 1.3e-136 490.0 297 82.5
Peaxi162Scf00027g02616 Petunia axillaris HOM05D003815 ORTHO05D004580 1.7e-136 489.6 295 82.0
arahy.Tifrunner.gnm1.ann1.46T9HD Arachis hypogaea HOM05D003815 ORTHO05D004580 5.0e-136 488.0 283 84.1
CsaV3_3G006290 Cucumis sativus L. HOM05D003815 ORTHO05D004580 5.0e-136 488.0 298 81.2
Nn1g04083 Nelumbo nucifera HOM05D003815 ORTHO05D004580 6.5e-136 487.6 296 81.8
CAN.G162.63 Capsicum annuum HOM05D003815 ORTHO05D004580 8.5e-136 487.3 294 81.3
Lalb_Chr01g0006511 Lupinus albus HOM05D003815 ORTHO05D004580 2.5e-135 485.7 294 81.0
Medtr1g057850 Medicago truncatula HOM05D003815 ORTHO05D004580 2.5e-135 485.7 280 82.9
Lj3g0002488 Lotus japonicus HOM05D003815 ORTHO05D004580 3.2e-135 485.3 302 80.1
MSTRG.15225 Avicennia marina HOM05D003815 ORTHO05D004580 4.2e-135 485.0 294 81.3
MBI07_g32649_MAGBIO Magnolia biondii HOM05D003815 ORTHO05D004580 4.2e-135 485.0 306 81.0
Psat5g229040 Pisum sativum HOM05D003815 ORTHO05D004580 5.5e-135 484.6 281 83.3
TPR.G454 Trifolium pratense HOM05D003815 ORTHO05D004580 1.6e-134 483.0 300 80.7
Oeu005415.1 Olea europaea HOM05D003815 ORTHO05D004580 2.7e-134 482.3 292 82.2
Migut.M00813 Erythranthe guttata HOM05D003815 ORTHO05D004580 4.7e-134 481.5 299 81.6
PSO541G6182 Papaver somniferum HOM05D003815 ORTHO05D004580 4.7e-134 481.5 294 81.6
FAN21G2274 Fragaria x ananassa HOM05D003815 ORTHO05D004580 7.9e-134 480.7 282 85.5
AUR62029379 Chenopodium quinoa HOM05D003815 ORTHO05D004580 1.4e-133 479.9 296 81.8
PSO675G7971 Papaver somniferum HOM05D003815 ORTHO05D004580 1.8e-133 479.6 294 81.3
Hund02213 Selenicereus undatus HOM05D003815 ORTHO05D004580 3.0e-133 478.8 294 81.0
ECA238G0528 Erigeron canadensis HOM05D003815 ORTHO05D004580 1.5e-132 476.5 282 82.6
SGA_v2.0_scaffold73G24269 Striga asiatica HOM05D003815 ORTHO05D004580 1.5e-132 476.5 281 83.3
Aqoxy1G02432 Aquilegia oxysepala HOM05D003815 ORTHO05D004580 2.0e-132 476.1 301 79.7
Sed0012787 Sechium edule HOM05D003815 ORTHO05D004580 9.7e-132 473.8 295 80.3
Ah.06g184010 Amaranthus hybridus HOM05D003815 ORTHO05D004580 3.7e-131 471.9 293 80.9
ATR0605G309 Amborella trichopoda HOM05D003815 ORTHO05D004580 3.7e-131 471.9 288 80.6
GSVIVG01005203001 Vitis vinifera HOM05D003815 ORTHO05D004580 8.2e-131 470.7 290 81.7
unitig_899.g15563 Utricularia gibba HOM05D003815 ORTHO05D004580 3.1e-130 468.8 295 78.0
Cc05_g12120 Coffea canephora HOM05D003815 ORTHO05D004580 5.3e-130 468.0 299 79.3
Actinidia01882 Actinidia chinensis HOM05D003815 ORTHO05D004580 7.7e-129 464.2 298 78.2
HanXRQChr11g0328431 Helianthus annuus HOM05D003815 ORTHO05D004580 7.7e-129 464.2 302 78.1
Cfa000456 Carpinus fangiana HOM05D003815 ORTHO05D004580 1.0e-128 463.8 297 79.1
CDE10G1101 Ceratophyllum demersum HOM05D003815 ORTHO05D004580 1.0e-128 463.8 287 80.1
ClCG10G006920 Citrullus lanatus HOM05D003815 ORTHO05D004580 1.0e-128 463.8 311 76.8
Lsat_1_v5_gn_7_105160 Lactuca sativa HOM05D003815 ORTHO05D004580 2.2e-128 462.6 294 78.6
Duzib213G0989 Durio zibethinus HOM05D003815 ORTHO05D004580 3.8e-128 461.8 282 83.0
CAN.G1110.56 Capsicum annuum HOM05D003815 ORTHO05D004580 6.5e-128 461.1 269 82.9
arahy.Tifrunner.gnm1.ann1.NKF69P Arachis hypogaea HOM05D003815 ORTHO05D004580 9.4e-127 457.2 284 79.9
QL05p040244 Quercus lobata HOM05D003815 ORTHO05D004580 9.4e-127 457.2 291 78.7
CiPaw.09G059900 Carya illinoinensis HOM05D003815 ORTHO05D004580 2.7e-126 455.7 281 79.4
Lsat_1_v5_gn_7_21261 Lactuca sativa HOM05D003815 ORTHO05D004580 8.0e-126 454.1 284 80.3
SEGI_36185 Sequoiadendron giganteum HOM05D003815 ORTHO05D004580 1.0e-125 453.8 288 78.8
RcHm_v2.0_Chr5g0008351 Rosa chinensis HOM05D003815 ORTHO05D004580 1.4e-125 453.4 292 79.1
Peaxi162Scf00069g01341 Petunia axillaris HOM05D003815 ORTHO05D004580 4.0e-125 451.8 291 78.0
HPP92_021319 Vanilla planifolia HOM05D003815 ORTHO05D004580 6.7e-125 451.1 300 76.7
AUR62034260 Chenopodium quinoa HOM05D003815 ORTHO05D004580 1.1e-124 450.3 292 78.8
Actinidia09679 Actinidia chinensis HOM05D003815 ORTHO05D004580 2.2e-123 446.0 263 84.4
Lj1A1206T62 Lonicera japonica HOM05D003815 ORTHO05D004580 3.7e-123 445.3 310 73.2
Lj8A54T73 Lonicera japonica HOM05D003815 ORTHO05D004580 2.4e-122 442.6 326 71.5
SalBow8G0761 Salvia bowleyana HOM05D003815 ORTHO05D004580 3.1e-122 442.2 266 83.1
Haze_09417 Corylus avellana HOM05D003815 ORTHO05D004580 1.2e-121 440.3 384 63.0
Os05g0561500 Oryza sativa ssp. japonica HOM05D003815 ORTHO05D004580 1.2e-121 440.3 298 74.5
Zm00001eb343610 Zea mays HOM05D003815 ORTHO05D004580 3.5e-121 438.7 301 73.4
FAN25G2093 Fragaria x ananassa HOM05D003815 ORTHO05D004580 1.7e-120 436.4 270 81.5
BcaC08g44025 Brassica carinata HOM05D003815 ORTHO05D004580 7.2e-119 431.0 285 76.5
SGA_v2.0_scaffold34G13823 Striga asiatica HOM05D003815 ORTHO05D004580 1.3e-115 420.2 251 82.1
CiPaw.11G168500 Carya illinoinensis HOM05D003815 ORTHO05D004580 2.8e-115 419.1 221 91.9
Rhsim06G0197600 Rhododendron simsii HOM05D003815 ORTHO05D004580 4.5e-113 411.8 221 89.6
Haze_06461 Corylus avellana HOM05D003815 ORTHO05D004580 1.7e-112 409.8 282 74.5
Prupe.4G047000 Prunus persica HOM05D003815 ORTHO05D004580 5.0e-112 408.3 261 77.8
Pp3c7_2170 Physcomitrium patens HOM05D003815 ORTHO05D004580 7.2e-111 404.4 285 69.8
Ca_12190_v3 Cicer arietinum L. HOM05D003815 ORTHO05D004580 8.8e-109 397.5 218 86.7
Ca_30578_v3 Cicer arietinum L. HOM05D003815 ORTHO05D004580 8.8e-109 397.5 218 86.7
AagrBONN_evm.TU.Sc2ySwM_344.3202 Anthoceros agrestis HOM05D003815 ORTHO05D004580 1.1e-106 390.6 250 74.8
Mapoly0026s0027 Marchantia polymorpha HOM05D003815 ORTHO05D004580 9.2e-106 387.5 273 66.7
SMO196G0043 Selaginella moellendorffii HOM05D003815 ORTHO05D004580 1.9e-103 379.8 251 72.5
FvH4_3g20180 Fragaria vesca HOM05D003815 ORTHO05D004580 1.6e-102 376.7 221 83.3
Actinidia12813 Actinidia chinensis HOM05D003815 ORTHO05D004580 2.6e-100 369.4 298 67.1
Dinv40557 Davidia involucrata HOM05D003815 ORTHO05D004580 1.3e-99 367.1 200 87.5
CBR_g31446 Chara braunii HOM05D003815 ORTHO05D004580 1.8e-98 363.2 252 68.3
PGSC0003DMG402012419 Solanum tuberosum HOM05D003815 ORTHO05D004580 5.6e-95 351.7 215 81.4
Duzib064G0003 Durio zibethinus HOM05D003815 ORTHO05D004580 3.7e-91 339.0 182 90.1
Cpa.g.sc80.53 Carica papaya HOM05D003815 ORTHO05D004580 1.9e-90 336.7 182 89.0
Oeu060549.1 Olea europaea HOM05D003815 ORTHO05D004580 2.5e-87 326.2 208 77.9
Duzib064G0004 Durio zibethinus HOM05D003815 ORTHO05D004580 2.4e-82 309.7 174 85.6
PSO017G1411 Papaver somniferum HOM05D003815 ORTHO05D004580 2.3e-80 303.1 195 77.4
Eucgr.F01114 Eucalyptus grandis HOM05D003815 ORTHO05D004580 6.6e-80 301.6 221 72.9
Lj3g0013472 Lotus japonicus HOM05D003815 ORTHO05D004580 8.6e-72 274.6 152 87.5
AagrBONN_evm.TU.Sc2ySwM_340.276 Anthoceros agrestis HOM05D003815 ORTHO05D004580 8.4e-67 258.1 194 66.5
ATR0730G188 Amborella trichopoda HOM05D003815 ORTHO05D004580 8.1e-62 241.5 146 80.1
BcaB07g33367 Brassica carinata HOM05D003815 ORTHO05D004580 5.8e-60 235.3 209 62.2
Pp3c11_23350 Physcomitrium patens HOM05D003815 ORTHO05D004580 3.2e-50 203.0 244 49.6
C07p00250 Brassica napus HOM05D003815 ORTHO05D004580 6.7e-48 195.3 119 74.8
Haze_06417 Corylus avellana HOM05D003815 ORTHO05D004580 3.1e-45 186.4 158 63.3
Haze_06421 Corylus avellana HOM05D003815 ORTHO05D004580 6.9e-45 185.3 136 71.3
Lj8A156T78 Lonicera japonica HOM05D003815 ORTHO05D004580 5.5e-42 175.6 177 57.1
BolC7t40476H Brassica oleracea HOM05D003815 ORTHO05D004580 3.5e-41 172.9 105 77.1
Hma1.2p1_0000F.1_g000160 Hydrangea macrophylla HOM05D003815 ORTHO05D004580 2.4e-37 160.2 87 83.9
BcaC06g36757 Brassica carinata HOM05D003815 ORTHO05D004580 1.7e-35 154.1 96 75.0
BolC6t36614H Brassica oleracea HOM05D003815 ORTHO05D004580 8.2e-30 135.2 93 76.3
Actinidia05634 Actinidia chinensis HOM05D003815 ORTHO05D004580 1.1e-29 134.8 92 73.9
MCO07G610 Micromonas commoda HOM05D003815 ORTHO05D004580 1.4e-29 134.4 303 32.3
Lj3g0015923 Lotus japonicus HOM05D003815 ORTHO05D004580 2.0e-28 130.6 209 41.6
CBR_g29613 Chara braunii HOM05D003815 ORTHO05D004580 5.0e-27 125.9 170 44.1
BcaC08g43686 Brassica carinata HOM05D003815 ORTHO05D004580 5.1e-24 115.9 66 83.3
BolC6t36186H Brassica oleracea HOM05D003815 ORTHO05D004580 5.1e-24 115.9 66 83.3
Ca_12192_v3 Cicer arietinum L. HOM05D003815 ORTHO05D004580 6.1e-17 92.4 87 62.1
Ca_30580_v3 Cicer arietinum L. HOM05D003815 ORTHO05D004580 6.1e-17 92.4 87 62.1
PSO017G7235 Papaver somniferum HOM05D003815 ORTHO05D004580 6.1e-17 92.4 53 77.4
Sopen05g017440 Solanum pennellii HOM05D003815 ORTHO05D004580 2.0e-15 87.4 158 38.0
Sopen05g018740 Solanum pennellii HOM05D000002 ORTHO05D000001 2.2e-14 84.0 85 52.9
Oeu044430.1 Olea europaea HOM05D003815 ORTHO05D004580 1.1e-13 81.6 80 50.0
BolC9t59438H Brassica oleracea HOM05D003815 ORTHO05D004580 1.6e-12 77.8 92 47.8
ATR0730G237 Amborella trichopoda HOM05D003815 ORTHO05D004580 1.7e-11 74.3 71 59.2
Lj8C156T6 Lonicera japonica HOM05D003815 ORTHO05D004580 8.5e-11 72.0 76 60.5
C09p66180 Brassica napus HOM05D003815 ORTHO05D004580 1.1e-10 71.6 103 40.8
Solyc04g079020.4 Solanum lycopersicum HOM05D003815 ORTHO05D004580 3.2e-10 70.1 110 40.0
COL.COLO4_36023 Corchorus olitorius HOM05D006127 ORTHO05D161883 1.2e-09 68.2 68 55.9
COL.COLO4_31682 Corchorus olitorius HOM05D000007 ORTHO05D000017 8.0e-09 65.5 43 76.7
Oeu026881.1 Olea europaea HOM05D001611 ORTHO05D001464 1.2e-07 61.6 57 47.4
Actinidia24031 Actinidia chinensis HOM05D003815 ORTHO05D004580 3.3e-07 60.1 34 79.4
Actinidia16545 Actinidia chinensis HOM05D003815 ORTHO05D056144 4.4e-07 59.7 53 60.4
Lj2g0024488 Lotus japonicus HOM05D003815 ORTHO05D004580 7.5e-07 58.9 38 76.3


User provided reference genes

Program Settings