Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Sabra11G0101600 Salix brachista HOM05D007892 ORTHO05D009211 2.0e-286 988.8 665 100.0
Potri.011G115900 Populus trichocarpa HOM05D007892 ORTHO05D009211 2.2e-208 729.6 670 77.2
Potri.001G397001 Populus trichocarpa HOM05D007892 ORTHO05D009211 1.5e-108 397.9 610 51.3
Manes.15G089300 Manihot esculenta HOM05D007892 ORTHO05D009211 3.9e-72 276.9 687 37.6
Dinv20199 Davidia involucrata HOM05D007892 ORTHO05D009211 3.0e-56 224.2 636 34.9
Cfa020559 Carpinus fangiana HOM05D007892 ORTHO05D009211 7.5e-55 219.5 719 33.9
Thecc.07G095700 Theobroma cacao HOM05D007892 ORTHO05D009211 7.0e-53 213.0 566 33.7
TWI38G1391 Tripterygium wilfordii HOM05D007892 ORTHO05D009211 7.5e-47 193.0 724 33.4
CiPaw.11G172000 Carya illinoinensis HOM05D007892 ORTHO05D009211 1.7e-46 191.8 675 32.6
Haze_09454 Corylus avellana HOM05D007892 ORTHO05D009211 2.8e-46 191.0 725 32.3
Dinv14936 Davidia involucrata HOM05D007892 ORTHO05D009211 1.6e-44 185.3 642 36.8
Duzib268G0896 Durio zibethinus HOM05D007892 ORTHO05D009211 3.5e-44 184.1 688 30.2
Duzib213G0678 Durio zibethinus HOM05D007892 ORTHO05D009211 2.9e-43 181.0 659 33.1
GSVIVG01014294001 Vitis vinifera HOM05D007892 ORTHO05D009211 3.8e-43 180.6 710 36.8
Duzib244G0002 Durio zibethinus HOM05D007892 ORTHO05D009211 1.9e-42 178.3 696 31.8
COL.COLO4_36713 Corchorus olitorius HOM05D007892 ORTHO05D009211 1.6e-41 175.3 639 31.3
Ciclev10007798m.g Citrus clementina HOM05D007892 ORTHO05D009211 6.8e-40 169.9 529 32.5
QL08p022727 Quercus lobata HOM05D007892 ORTHO05D009211 1.5e-39 168.7 774 34.1
Gorai.002G067800 Gossypium raimondii HOM05D007892 ORTHO05D009211 7.5e-39 166.4 617 30.5
CSS0030192 Camellia sinensis var. sinensis HOM05D007892 ORTHO05D009211 9.8e-39 166.0 651 33.8
CANSAT56G4073 Cannabis sativa HOM05D007892 ORTHO05D009211 3.7e-38 164.1 580 33.4
CSS0005747 Camellia sinensis var. sinensis HOM05D007892 ORTHO05D009211 1.8e-37 161.8 651 33.6
FAN25G2763 Fragaria x ananassa HOM05D007892 ORTHO05D009211 4.1e-37 160.6 707 35.5
TAR626G1218 Trochodendron aralioides HOM05D007892 ORTHO05D009211 9.2e-37 159.5 685 32.1
Gohir.D01G048000 Gossypium hirsutum HOM05D007892 ORTHO05D009211 2.9e-35 154.5 617 31.1
MD03G1231500 Malus domestica HOM05D007892 ORTHO05D009211 3.9e-35 154.1 712 33.8
FAN21G3246 Fragaria x ananassa HOM05D007892 ORTHO05D009211 8.6e-35 152.9 691 35.7
Rhsim06G0202400 Rhododendron simsii HOM05D007892 ORTHO05D009211 9.5e-34 149.4 570 31.2
MD11G1252600 Malus domestica HOM05D007892 ORTHO05D009211 8.0e-33 146.4 536 33.4
FvH4_3g19480 Fragaria vesca HOM05D007892 ORTHO05D009211 1.4e-32 145.6 698 34.0
FAN11G1893 Fragaria x ananassa HOM05D007892 ORTHO05D009211 3.1e-32 144.4 559 30.6
RcHm_v2.0_Chr5g0032741 Rosa chinensis HOM05D007892 ORTHO05D009211 4.4e-31 140.6 491 32.4
FAN16G1540 Fragaria x ananassa HOM05D007892 ORTHO05D009211 7.5e-31 139.8 707 34.1
Glyma.12G226900 Glycine max HOM05D007892 ORTHO05D009211 1.7e-30 138.7 554 31.0
Prupe.4G176400 Prunus persica HOM05D007892 ORTHO05D009211 2.2e-30 138.3 568 29.9
Lalb_Chr01g0016751 Lupinus albus HOM05D007892 ORTHO05D009211 3.2e-29 134.4 704 31.7
vmacro11887 Vaccinium macrocarpon HOM05D007892 ORTHO05D009211 1.2e-28 132.5 644 32.9
Eucgr.F01161 Eucalyptus grandis HOM05D007892 ORTHO05D009211 2.0e-28 131.7 701 29.8
Atru.chr2.2419 Acer truncatum HOM05D007892 ORTHO05D009211 1.3e-27 129.0 321 37.1
Lj3g0007189 Lotus japonicus HOM05D007892 ORTHO05D009211 1.8e-24 118.6 581 29.8
Gohir.A01G061400 Gossypium hirsutum HOM05D007892 ORTHO05D009211 8.9e-24 116.3 494 27.5
arahy.Tifrunner.gnm1.ann1.8Q202K Arachis hypogaea HOM05D007892 ORTHO05D009211 9.8e-23 112.8 573 29.3
Medtr2g078660 Medicago truncatula HOM05D007892 ORTHO05D009211 4.9e-22 110.5 525 28.6
Ca_03530_v3 Cicer arietinum L. HOM05D007892 ORTHO05D009211 1.1e-21 109.4 641 30.9
Cc05_g11770 Coffea canephora HOM05D007892 ORTHO05D009211 4.1e-21 107.5 547 35.6
Glyma.13G273900 Glycine max HOM05D007892 ORTHO05D009211 2.3e-19 101.7 538 32.5
Actinidia09702 Actinidia chinensis HOM05D007892 ORTHO05D009211 1.1e-18 99.4 550 29.5
DCAR_019569 Daucus carota HOM05D007892 ORTHO05D009211 2.1e-17 95.1 524 27.5
Sc03g0010140 Simmondsia chinensis HOM05D007892 ORTHO05D009211 2.3e-16 91.7 349 30.1
ClCG11G017870 Citrullus lanatus HOM05D007892 ORTHO05D009211 3.1e-16 91.3 642 26.6
Aqoxy1G02331 Aquilegia oxysepala HOM05D007892 ORTHO05D009211 8.9e-16 89.7 693 31.9
Sed0012696 Sechium edule HOM05D007892 ORTHO05D009211 1.2e-15 89.4 557 27.3
Oeu037370.2 Olea europaea HOM05D007892 ORTHO05D009211 4.4e-15 87.4 546 25.6
Hund22811 Selenicereus undatus HOM05D007892 ORTHO05D009211 2.2e-14 85.1 662 29.0
Lj1A840G45 Lonicera japonica HOM05D007892 ORTHO05D009211 2.9e-14 84.7 534 27.2
VMungo0331G1677 Vigna mungo HOM05D007892 ORTHO05D009211 4.1e-13 80.9 541 27.4
CsaV3_4G033500 Cucumis sativus L. HOM05D007892 ORTHO05D009211 2.7e-12 78.2 611 25.9
EL10Ac4g08232 Beta vulgaris HOM05D007892 ORTHO05D009211 6.0e-12 77.0 78 59.0
AUR62036164 Chenopodium quinoa HOM05D007892 ORTHO05D009211 6.0e-12 77.0 510 27.1
TPR.G7948 Trifolium pratense HOM05D007892 ORTHO05D009211 1.0e-11 76.3 76 59.2
Migut.M00782 Erythranthe guttata HOM05D007892 ORTHO05D009211 6.6e-11 73.6 71 59.2
arahy.Tifrunner.gnm1.ann1.N2Q107 Arachis hypogaea HOM05D007892 ORTHO05D009211 8.6e-11 73.2 79 55.7
Psat0s3104g0160 Pisum sativum HOM05D007892 ORTHO05D009211 1.1e-10 72.8 217 36.4
Phvul.010G112300 Phaseolus vulgaris HOM05D007892 ORTHO05D009211 2.5e-10 71.6 691 30.8
Ah.06g184550 Amaranthus hybridus HOM05D007892 ORTHO05D009211 3.3e-10 71.2 52 69.2
CDE05G2993 Ceratophyllum demersum HOM05D007892 ORTHO05D009211 3.3e-10 71.2 63 57.1
Sopen07g031110 Solanum pennellii HOM05D021138 ORTHO05D009211 4.3e-10 70.9 577 26.2
unitig_37.g12567 Utricularia gibba HOM05D007892 ORTHO05D009211 4.3e-10 70.9 50 70.0
PSO675G5502 Papaver somniferum HOM05D056025 ORTHO05D009211 5.6e-10 70.5 69 59.4
HanXRQChr11g0351991 Helianthus annuus HOM05D007892 ORTHO05D009211 2.1e-09 68.6 552 26.3
Lsat_1_v5_gn_7_104640 Lactuca sativa HOM05D007892 ORTHO05D009211 3.6e-09 67.8 96 43.8
PGSC0003DMG403012406 Solanum tuberosum HOM05D021138 ORTHO05D009211 1.1e-08 66.2 660 26.2
ATR0150G007 Amborella trichopoda HOM05D007892 ORTHO05D009211 4.0e-08 64.3 71 56.3
A02p10690 Brassica napus HOM05D012500 ORTHO05D009211 4.0e-08 64.3 72 51.4
BraA02t06132Z Brassica rapa HOM05D012500 ORTHO05D009211 4.0e-08 64.3 72 51.4
BcaC03g14367 Brassica carinata HOM05D012500 ORTHO05D009211 8.9e-08 63.2 77 48.1
BolC2t07910H Brassica oleracea HOM05D012500 ORTHO05D009211 1.2e-07 62.8 72 51.4
MELO3C025606.2 Cucumis melo HOM05D007892 ORTHO05D009211 1.2e-07 62.8 614 25.4
THA.LOC104799933 Tarenaya hassleriana HOM05D012500 ORTHO05D009211 2.6e-07 61.6 417 25.9
MSTRG.6820 Avicennia marina HOM05D007892 ORTHO05D009211 5.8e-07 60.5 653 27.9
Os07g0107900 Oryza sativa ssp. japonica HOM05D061528 ORTHO05D009211 7.6e-07 60.1 43 69.8
Solyc07g062920.4 Solanum lycopersicum HOM05D021138 ORTHO05D009211 7.6e-07 60.1 649 26.3
Nn1g06449 Nelumbo nucifera HOM05D007892 ORTHO05D009211 2.2e-06 58.5 534 25.3
ECA236G4021 Erigeron canadensis HOM05D000553 ORTHO05D009211 4.9e-06 57.4 558 35.7


User provided reference genes

Program Settings