Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Sabra11G0090500 Salix brachista HOM05D004118 ORTHO05D004686 0.0e+00 1283.9 718 100.0
Sabra11G0091500 Salix brachista HOM05D004118 ORTHO05D004686 0.0e+00 1253.8 718 97.5
Potri.011G097700 Populus trichocarpa HOM05D004118 ORTHO05D004686 8.6e-299 1030.0 735 80.8
Potri.001G373100 Populus trichocarpa HOM05D004118 ORTHO05D004686 1.4e-248 863.2 732 73.0
Sabra16G0245500 Salix brachista HOM05D004118 ORTHO05D004686 2.2e-230 802.7 712 70.1
Manes.15G090200 Manihot esculenta HOM05D004118 ORTHO05D004686 2.8e-196 689.5 760 56.7
Manes.03G104700 Manihot esculenta HOM05D004118 ORTHO05D004686 1.7e-182 643.7 739 56.0
Cpa.g.sc80.12 Carica papaya HOM05D004118 ORTHO05D004686 3.1e-155 553.1 758 50.5
Thecc.07G100000 Theobroma cacao HOM05D004118 ORTHO05D004686 4.4e-154 549.3 755 52.1
Duzib213G0890 Durio zibethinus HOM05D004118 ORTHO05D004686 1.4e-152 544.3 754 52.8
CiPaw.11G166400 Carya illinoinensis HOM05D004118 ORTHO05D004686 6.6e-150 535.4 755 50.6
Cfa020624 Carpinus fangiana HOM05D004118 ORTHO05D004686 8.7e-150 535.0 745 52.6
QL08p023555 Quercus lobata HOM05D004118 ORTHO05D004686 1.1e-149 534.6 756 49.6
Haze_09381 Corylus avellana HOM05D004118 ORTHO05D004686 4.5e-146 522.7 736 52.9
TWI39G0897 Tripterygium wilfordii HOM05D004118 ORTHO05D004686 4.6e-143 512.7 767 47.2
CiPaw.12G116800 Carya illinoinensis HOM05D004118 ORTHO05D004686 1.5e-138 497.7 740 48.0
Prupe.4G173200 Prunus persica HOM05D004118 ORTHO05D004686 1.3e-137 494.6 768 48.0
Gohir.D13G152264 Gossypium hirsutum HOM05D004118 ORTHO05D004686 4.9e-137 492.7 749 49.7
MD03G1236100 Malus domestica HOM05D004118 ORTHO05D004686 6.4e-137 492.3 761 49.3
MD11G1256900 Malus domestica HOM05D004118 ORTHO05D004686 5.5e-136 489.2 768 47.7
PGR083G2344 Punica granatum HOM05D004118 ORTHO05D004686 3.0e-134 483.4 741 48.3
Eucgr.F01179 Eucalyptus grandis HOM05D004118 ORTHO05D004686 2.5e-133 480.3 755 44.9
VMungo1080G0043 Vigna mungo HOM05D004118 ORTHO05D004686 5.6e-133 479.2 747 47.8
Gohir.A13G147400 Gossypium hirsutum HOM05D004118 ORTHO05D004686 1.8e-131 474.2 758 49.3
Ciclev10007570m.g Citrus clementina HOM05D004118 ORTHO05D004686 4.0e-131 473.0 766 47.9
Gorai.013G171900 Gossypium raimondii HOM05D004118 ORTHO05D004686 4.5e-130 469.5 750 46.0
Solyc07g062730.1 Solanum lycopersicum HOM05D004118 ORTHO05D004686 8.4e-129 465.3 740 45.3
CSS0010936 Camellia sinensis var. sinensis HOM05D004118 ORTHO05D004686 1.4e-128 464.5 748 47.5
Nitab4.5_0011677g0020 Nicotiana tabacum HOM05D004118 ORTHO05D004686 2.5e-128 463.8 749 45.3
Nitab4.5_0000246g0070 Nicotiana tabacum HOM05D004118 ORTHO05D004686 3.2e-128 463.4 750 44.1
TWI38G2280 Tripterygium wilfordii HOM05D004118 ORTHO05D004686 1.6e-127 461.1 741 46.4
FvH4_3g19150 Fragaria vesca HOM05D004118 ORTHO05D004686 2.1e-127 460.7 751 45.5
TAR627G0391 Trochodendron aralioides HOM05D004118 ORTHO05D004686 6.0e-127 459.1 739 47.6
PGSC0003DMG400012399 Solanum tuberosum HOM05D004118 ORTHO05D004686 3.0e-126 456.8 752 44.9
MSTRG.6813 Avicennia marina HOM05D004118 ORTHO05D004686 3.3e-125 453.4 765 45.2
Medtr2g078530 Medicago truncatula HOM05D004118 ORTHO05D004686 7.4e-125 452.2 777 45.2
Sopen07g030960 Solanum pennellii HOM05D004118 ORTHO05D004686 9.7e-125 451.8 746 44.9
Glyma.13G273000 Glycine max HOM05D004118 ORTHO05D004686 1.6e-124 451.1 770 46.2
FAN11G3070 Fragaria x ananassa HOM05D004118 ORTHO05D004686 2.2e-124 450.7 744 45.6
Phvul.005G069300 Phaseolus vulgaris HOM05D004118 ORTHO05D004686 2.0e-122 444.1 740 46.6
FAN25G0990 Fragaria x ananassa HOM05D004118 ORTHO05D004686 4.5e-122 443.0 749 46.6
Duzib170G0047 Durio zibethinus HOM05D004118 ORTHO05D004686 1.3e-121 441.4 716 46.5
RcHm_v2.0_Chr5g0032241 Rosa chinensis HOM05D004118 ORTHO05D004686 2.9e-121 440.3 746 46.6
CAN.G162.27 Capsicum annuum HOM05D004118 ORTHO05D004686 1.1e-120 438.3 747 44.7
FAN16G2866 Fragaria x ananassa HOM05D004118 ORTHO05D004686 2.5e-120 437.2 748 47.1
Gohir.D01G046700 Gossypium hirsutum HOM05D004118 ORTHO05D004686 1.6e-119 434.5 726 46.7
FAN21G0508 Fragaria x ananassa HOM05D004118 ORTHO05D004686 5.1e-118 429.5 746 44.8
MELO3C019394.2 Cucumis melo HOM05D004118 ORTHO05D004686 1.9e-117 427.6 774 43.3
CsaV3_3G019580 Cucumis sativus L. HOM05D004118 ORTHO05D004686 9.7e-117 425.2 764 43.7
Actinidia35234 Actinidia chinensis HOM05D004118 ORTHO05D001556 1.4e-115 421.4 721 44.7
Psat5g241400 Pisum sativum HOM05D004118 ORTHO05D004686 2.4e-115 420.6 758 45.1
CSS0009782 Camellia sinensis var. sinensis HOM05D004118 ORTHO05D004686 5.3e-115 419.5 703 46.4
DCAR_021002 Daucus carota HOM05D004118 ORTHO05D004686 3.4e-114 416.8 771 41.8
Aqoxy1G02262 Aquilegia oxysepala HOM05D004118 ORTHO05D004686 2.2e-113 414.1 744 42.3
SalBow8G5405 Salvia bowleyana HOM05D004118 ORTHO05D004686 7.2e-112 409.1 743 45.4
Sc16g0007320 Simmondsia chinensis HOM05D004118 ORTHO05D004686 2.3e-110 404.1 772 42.4
Cc05_g11580 Coffea canephora HOM05D004118 ORTHO05D004686 1.1e-109 401.7 834 42.2
Lalb_Chr20g0109451 Lupinus albus HOM05D004118 ORTHO05D004686 3.1e-107 393.7 760 41.3
Nn1g04275 Nelumbo nucifera HOM05D004118 ORTHO05D004686 1.5e-106 391.3 748 40.0
Peaxi162Scf00000g00285 Petunia axillaris HOM05D004118 ORTHO05D004686 2.6e-106 390.6 742 41.8
Lj3g0023579 Lotus japonicus HOM05D004118 ORTHO05D004686 3.8e-105 386.7 760 44.7
Gorai.002G066200 Gossypium raimondii HOM05D004118 ORTHO05D004686 8.5e-105 385.6 619 49.1
Glyma.12G227300 Glycine max HOM05D004118 ORTHO05D004686 7.2e-104 382.5 759 44.0
PGSC0003DMG400015371 Solanum tuberosum HOM05D004118 ORTHO05D004686 1.6e-103 381.3 746 41.2
Dinv14950 Davidia involucrata HOM05D004118 ORTHO05D004686 2.3e-102 377.5 643 45.9
MSTRG.12889 Avicennia marina HOM05D004118 ORTHO05D004686 5.2e-102 376.3 770 40.1
MSTRG.15246 Avicennia marina HOM05D004118 ORTHO05D004686 2.0e-101 374.4 753 40.5
Dinv20215 Davidia involucrata HOM05D004118 ORTHO05D004686 1.7e-100 371.3 726 45.0
Lalb_Chr25g0286181 Lupinus albus HOM05D004118 ORTHO05D004686 1.7e-100 371.3 712 39.0
Sed0017211 Sechium edule HOM05D004118 ORTHO05D004686 2.2e-100 370.9 757 40.7
SGA_v2.0_scaffold73G24222 Striga asiatica HOM05D004118 ORTHO05D004686 2.8e-100 370.5 774 39.5
Actinidia07500 Actinidia chinensis HOM05D004118 ORTHO05D004686 8.2e-100 369.0 729 42.9
Nitab4.5_0003033g0050 Nicotiana tabacum HOM05D004118 ORTHO05D004686 1.4e-99 368.2 745 44.0
TPR.G17554 Trifolium pratense HOM05D004118 ORTHO05D004686 1.2e-98 365.2 773 41.0
Migut.M00768 Erythranthe guttata HOM05D004118 ORTHO05D004686 2.7e-95 354.0 779 41.7
Sopen12g005780 Solanum pennellii HOM05D004118 ORTHO05D004686 1.4e-94 351.7 746 38.5
CANSAT35G0858 Cannabis sativa HOM05D004118 ORTHO05D004686 8.8e-94 349.0 779 41.6
THA.LOC104810455 Tarenaya hassleriana HOM05D004118 ORTHO05D004686 2.6e-93 347.4 741 39.7
Peaxi162Scf00069g00197 Petunia axillaris HOM05D004118 ORTHO05D004686 5.7e-93 346.3 740 38.8
Nitab4.5_0000332g0190 Nicotiana tabacum HOM05D004118 ORTHO05D004686 7.5e-93 345.9 740 39.2
Lsat_1_v5_gn_9_98421 Lactuca sativa HOM05D004118 ORTHO05D004686 3.7e-92 343.6 755 38.0
Sp3g13300 Schrenkiella parvula HOM05D004118 ORTHO05D004686 8.2e-92 342.4 759 38.9
Lj8C153G19 Lonicera japonica HOM05D004118 ORTHO05D004686 1.1e-91 342.0 727 38.9
PSO675G0887 Papaver somniferum HOM05D004118 ORTHO05D004686 1.1e-91 342.0 779 37.0
Oeu019296.1 Olea europaea HOM05D004118 ORTHO05D004686 2.4e-91 340.9 754 43.4
CSS0030924 Camellia sinensis var. sinensis HOM05D004118 ORTHO05D004686 4.1e-91 340.1 730 40.8
Thhalv10020211m.g Eutrema salsugineum HOM05D004118 ORTHO05D004686 1.7e-89 334.7 753 38.4
Lsat_1_v5_gn_5_128820 Lactuca sativa HOM05D004118 ORTHO05D004686 1.7e-89 334.7 750 38.5
vmacro11898 Vaccinium macrocarpon HOM05D004118 ORTHO05D004686 3.8e-89 333.6 756 40.6
Aa31LG8G2310 Aethionema arabicum HOM05D004118 ORTHO05D004686 3.6e-87 327.0 744 38.0
PSO478G3864 Papaver somniferum HOM05D004118 ORTHO05D004686 8.0e-87 325.9 806 35.7
Lsat_1_v5_gn_7_103661 Lactuca sativa HOM05D004118 ORTHO05D004686 5.2e-86 323.2 747 37.6
HanXRQChr03g0070941 Helianthus annuus HOM05D004118 ORTHO05D004686 8.8e-86 322.4 756 37.2
Rhsim04G0023200 Rhododendron simsii HOM05D004118 ORTHO05D004686 4.4e-85 320.1 727 39.8
EL10Ac4g08266 Beta vulgaris HOM05D004118 ORTHO05D004686 2.4e-83 314.3 775 40.0
ECA240G2123 Erigeron canadensis HOM05D004118 ORTHO05D004686 3.1e-83 313.9 757 37.6
Rhsim06G0203400 Rhododendron simsii HOM05D004118 ORTHO05D004686 9.1e-83 312.4 760 40.1
ECA236G3195 Erigeron canadensis HOM05D004118 ORTHO05D004686 2.0e-82 311.2 753 37.5
Sed0016267 Sechium edule HOM05D004118 ORTHO05D004686 1.1e-80 305.4 722 37.0
Hma1.2p1_0313F.1_g121640 Hydrangea macrophylla HOM05D004118 ORTHO05D004686 4.2e-80 303.5 689 37.9
PSO017G1325 Papaver somniferum HOM05D004118 ORTHO05D004686 4.2e-80 303.5 813 35.3
arahy.Tifrunner.gnm1.ann1.YMW7LF Arachis hypogaea HOM05D004118 ORTHO05D004686 1.2e-79 302.0 743 35.9
MBI07_g32544_MAGBIO Magnolia biondii HOM05D004118 ORTHO05D004686 3.6e-79 300.4 767 38.7
Oeu025351.1 Olea europaea HOM05D004118 ORTHO05D004686 8.9e-78 295.8 736 37.6
PSO541G0755 Papaver somniferum HOM05D004118 ORTHO05D004686 1.2e-77 295.4 776 36.5
HanXRQChr10g0302481 Helianthus annuus HOM05D004118 ORTHO05D004686 4.4e-77 293.5 743 36.7
AUR62036141 Chenopodium quinoa HOM05D004118 ORTHO05D004686 1.7e-76 291.6 790 38.0
unitig_37.g12565 Utricularia gibba HOM05D004118 ORTHO05D004686 8.3e-76 289.3 744 35.5
ECA234G1224 Erigeron canadensis HOM05D004118 ORTHO05D004686 3.5e-74 283.9 746 36.7
CARHR090060 Cardamine hirsuta HOM05D004118 ORTHO05D004686 9.5e-72 275.8 748 36.6
Aqoxy4G00578 Aquilegia oxysepala HOM05D004118 ORTHO05D004686 8.0e-71 272.7 762 35.7
unitig_747.g21581 Utricularia gibba HOM05D004118 ORTHO05D004686 8.0e-71 272.7 792 34.6
Ah.06g194460 Amaranthus hybridus HOM05D004118 ORTHO05D004686 2.3e-70 271.2 743 37.0
Lalb_Chr01g0006651 Lupinus albus HOM05D004118 ORTHO05D004686 4.4e-69 266.9 731 33.9
BcaB04g20948 Brassica carinata HOM05D004118 ORTHO05D004686 1.7e-68 265.0 728 33.9
AL3G27450 Arabidopsis lyrata HOM05D004118 ORTHO05D004686 1.4e-67 261.9 765 36.1
DCAR_019575 Daucus carota HOM05D004118 ORTHO05D004686 1.3e-65 255.4 733 33.4
ATR0602G295 Amborella trichopoda HOM05D004118 ORTHO05D004686 4.3e-64 250.4 744 33.7
Gohir.A08G021600 Gossypium hirsutum HOM05D004118 ORTHO05D004686 5.8e-61 240.0 700 35.0
Gohir.D08G032400 Gossypium hirsutum HOM05D004118 ORTHO05D004686 7.5e-61 239.6 700 34.3
arahy.Tifrunner.gnm1.ann1.82B0EJ Arachis hypogaea HOM05D004118 ORTHO05D004686 4.1e-59 233.8 654 34.3
Gorai.004G029800 Gossypium raimondii HOM05D004118 ORTHO05D004686 4.6e-58 230.3 702 34.3
Gohir.A01G060200 Gossypium hirsutum HOM05D004118 ORTHO05D004686 2.5e-56 224.6 516 40.9
GSVIVG01014262001 Vitis vinifera HOM05D004118 ORTHO05D003395 9.5e-56 222.6 583 36.5
Zm00001eb014970 Zea mays HOM05D004118 ORTHO05D004686 1.4e-54 218.8 878 31.0
HPP92_002942 Vanilla planifolia HOM05D004118 ORTHO05D004686 1.2e-50 205.7 768 32.3
BcaC09g48474 Brassica carinata HOM05D004118 ORTHO05D004686 1.3e-49 202.2 701 31.5
A05p34340 Brassica napus HOM05D004118 ORTHO05D004686 2.3e-49 201.4 755 33.4
BolC1t04899H Brassica oleracea HOM05D004118 ORTHO05D004686 3.0e-49 201.1 691 31.4
C01p49420 Brassica napus HOM05D004118 ORTHO05D004686 8.6e-49 199.5 714 31.0
C05p52120 Brassica napus HOM05D004118 ORTHO05D004686 8.6e-49 199.5 747 32.1
BolC5t33897H Brassica oleracea HOM05D004118 ORTHO05D004686 8.6e-49 199.5 747 32.1
Os06g0352900 Oryza sativa ssp. japonica HOM05D004118 ORTHO05D004686 1.9e-48 198.4 838 30.3
Zm00001eb395950 Zea mays HOM05D004118 ORTHO05D004686 1.9e-48 198.4 839 32.2
Ah.04g162010 Amaranthus hybridus HOM05D004118 ORTHO05D004686 3.3e-48 197.6 749 32.4
BcaB06g29535 Brassica carinata HOM05D004118 ORTHO05D004686 9.5e-48 196.1 749 31.6
DCAR_017117 Daucus carota HOM05D004118 ORTHO05D004686 9.5e-48 196.1 748 30.5
SGA_v2.0_scaffold70G23697 Striga asiatica HOM05D004118 ORTHO05D004686 8.1e-47 193.0 719 33.4
HanXRQChr15g0494281 Helianthus annuus HOM05D004118 ORTHO05D004686 1.8e-46 191.8 802 30.7
Lalb_Chr19g0134031 Lupinus albus HOM05D004118 ORTHO05D004686 1.8e-46 191.8 726 30.4
Atru.chr2.2381 Acer truncatum HOM05D004118 ORTHO05D004686 2.6e-45 188.0 156 64.1
BraA05t22255Z Brassica rapa HOM05D004118 ORTHO05D004686 4.4e-45 187.2 759 32.5
THA.LOC104798758 Tarenaya hassleriana HOM05D004118 ORTHO05D004686 5.8e-45 186.8 628 33.0
Actinidia14383 Actinidia chinensis HOM05D004118 ORTHO05D004686 7.6e-45 186.4 162 62.3
PSO675G3813 Papaver somniferum HOM05D004118 ORTHO05D004686 4.9e-44 183.7 353 39.4
HPP92_003871 Vanilla planifolia HOM05D004118 ORTHO05D004686 3.2e-43 181.0 751 29.0
Lalb_Chr03g0030811 Lupinus albus HOM05D004118 ORTHO05D004686 2.3e-41 174.9 743 31.2
Nn1g06377 Nelumbo nucifera HOM05D004118 ORTHO05D004686 6.6e-41 173.3 209 51.7
Atru.chr2.2380 Acer truncatum HOM05D004118 ORTHO05D004686 5.6e-40 170.2 316 44.0
Solyc12g014040.1 Solanum lycopersicum HOM05D004118 ORTHO05D004686 4.7e-39 167.2 230 46.5
Lsat_1_v5_gn_4_172920 Lactuca sativa HOM05D004118 ORTHO05D004686 3.4e-37 161.0 218 47.7
SEGI_08873 Sequoiadendron giganteum HOM05D004118 ORTHO05D004686 4.9e-36 157.1 736 29.1
AT3G15095 Arabidopsis thaliana HOM05D004118 ORTHO05D004686 6.4e-36 156.8 483 36.6
HPP92_003895 Vanilla planifolia HOM05D004118 ORTHO05D004686 4.3e-32 144.1 320 36.9
SGA_v2.0_scaffold130G34343 Striga asiatica HOM05D004118 ORTHO05D004686 2.1e-31 141.7 749 29.9
CAN.G329.5 Capsicum annuum HOM05D004118 ORTHO05D004686 6.9e-30 136.7 179 49.2
HanXRQChr12g0372791 Helianthus annuus HOM05D004118 ORTHO05D004686 1.2e-29 136.0 186 46.2
Lsat_1_v5_gn_1_36460 Lactuca sativa HOM05D004118 ORTHO05D004686 7.6e-29 133.3 160 51.9
AUR62019494 Chenopodium quinoa HOM05D004118 ORTHO05D004686 1.7e-28 132.1 535 32.9
Cc04_g12070 Coffea canephora HOM05D004118 ORTHO05D004686 2.4e-27 128.3 135 53.3
Cfa006262 Carpinus fangiana HOM05D000001 ORTHO05D000003 3.5e-26 124.4 143 51.0
Lj1P837T15 Lonicera japonica HOM05D004118 ORTHO05D004686 1.1e-24 119.4 107 70.1
Actinidia33372 Actinidia chinensis HOM05D004118 ORTHO05D004686 6.9e-22 110.2 109 65.1
HPP92_003896 Vanilla planifolia HOM05D004118 ORTHO05D004686 1.9e-19 102.1 176 39.2
CDE10G0292 Ceratophyllum demersum HOM05D004118 ORTHO05D004686 2.1e-15 88.6 715 24.5
TPR.G17527 Trifolium pratense HOM05D004118 ORTHO05D004686 3.7e-15 87.8 50 86.0
CDE10G0599 Ceratophyllum demersum HOM05D004118 ORTHO05D004686 7.6e-13 80.1 255 30.2
Lsat_1_v5_gn_5_162921 Lactuca sativa HOM05D004118 ORTHO05D004686 2.2e-12 78.6 74 60.8
CDE02G0061 Ceratophyllum demersum HOM05D004118 ORTHO05D004686 4.2e-11 74.3 585 24.8
SEGI_02629 Sequoiadendron giganteum HOM05D004118 ORTHO05D004686 3.5e-10 71.2 392 24.7
TAR623G0879 Trochodendron aralioides HOM05D004499 ORTHO05D004928 4.6e-10 70.9 364 28.6
Manes.09G078863 Manihot esculenta HOM05D004499 ORTHO05D004928 1.5e-08 65.9 325 27.4
PGR004G1454 Punica granatum HOM05D004499 ORTHO05D004928 9.7e-08 63.2 323 30.0
Duzib093G0117 Durio zibethinus HOM05D004499 ORTHO05D004928 2.8e-07 61.6 313 30.0
Hma1.2p1_0350F.1_g132810 Hydrangea macrophylla HOM05D004499 ORTHO05D004928 1.1e-06 59.7 341 27.3
GSVIVG01025644001 Vitis vinifera HOM05D004499 ORTHO05D004928 1.1e-06 59.7 84 52.4
Thecc.08G109100 Theobroma cacao HOM05D003923 ORTHO05D004553 1.4e-06 59.3 241 24.9
Dinv37265 Davidia involucrata HOM05D004499 ORTHO05D004928 3.1e-06 58.2 336 27.1
QL07p045089 Quercus lobata HOM05D004499 ORTHO05D004928 3.1e-06 58.2 347 25.1
Thecc.05G055800 Theobroma cacao HOM05D004499 ORTHO05D004928 5.3e-06 57.4 305 28.5
COL.COLO4_27061 Corchorus olitorius HOM05D004499 ORTHO05D004928 6.9e-06 57.0 89 51.7
SEGI_41423 Sequoiadendron giganteum HOM05D003923 ORTHO05D004553 9.0e-06 56.6 274 32.1


User provided reference genes

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