Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Sabra11G0088600 Salix brachista HOM05D006736 ORTHO05D008459 3.0e-48 194.9 101 100.0
Potri.001G371400 Populus trichocarpa HOM05D006736 ORTHO05D008459 1.3e-22 109.8 115 60.9
Sabra16G0244100 Salix brachista HOM05D006736 ORTHO05D008459 1.4e-18 96.3 98 59.2
Manes.01G003400 Manihot esculenta HOM05D006736 ORTHO05D008459 1.7e-14 82.8 118 47.5
TWI38G1827 Tripterygium wilfordii HOM05D006736 ORTHO05D008459 2.4e-13 79.0 61 65.6
Lj6g0005510 Lotus japonicus HOM05D006736 ORTHO05D008459 4.1e-13 78.2 59 62.7
Manes.05G200400 Manihot esculenta HOM05D006736 ORTHO05D008459 1.2e-12 76.6 101 48.5
Medtr3g461010 Medicago truncatula HOM05D006736 ORTHO05D008459 2.0e-12 75.9 96 46.9
Duzib268G0079 Durio zibethinus HOM05D006736 ORTHO05D008459 2.6e-12 75.5 100 48.0
Thecc.07G008000 Theobroma cacao HOM05D006736 ORTHO05D008459 3.5e-12 75.1 99 50.5
CiPaw.11G206800 Carya illinoinensis HOM05D006736 ORTHO05D008459 7.7e-12 73.9 68 60.3
COL.COLO4_07740 Corchorus olitorius HOM05D006736 ORTHO05D008459 1.0e-11 73.6 51 72.5
QL08p003180 Quercus lobata HOM05D006736 ORTHO05D008459 2.2e-11 72.4 101 48.5
Psat5g166560 Pisum sativum HOM05D006736 ORTHO05D008459 3.8e-11 71.6 65 58.5
TWI39G1297 Tripterygium wilfordii HOM05D006736 ORTHO05D008459 5.0e-11 71.2 78 53.8
Eucgr.F02027 Eucalyptus grandis HOM05D006736 ORTHO05D008459 1.1e-10 70.1 95 47.4
Glyma.18G074500 Glycine max HOM05D006736 ORTHO05D008459 1.5e-10 69.7 51 64.7
MELO3C024968.2 Cucumis melo HOM05D006736 ORTHO05D008459 1.9e-10 69.3 54 64.8
Glyma.08G332400 Glycine max HOM05D006736 ORTHO05D008459 1.9e-10 69.3 51 64.7
FvH4_3g42280 Fragaria vesca HOM05D006736 ORTHO05D008459 2.5e-10 68.9 64 62.5
FAN11G0661 Fragaria x ananassa HOM05D006736 ORTHO05D008459 2.5e-10 68.9 64 62.5
FAN16G2066 Fragaria x ananassa HOM05D002691 ORTHO05D003304 2.5e-10 68.9 64 62.5
FAN25G3397 Fragaria x ananassa HOM05D006736 ORTHO05D008459 2.5e-10 68.9 64 62.5
Cfa021889 Carpinus fangiana HOM05D006736 ORTHO05D008459 4.2e-10 68.2 98 46.9
VMungo0540G0896 Vigna mungo HOM05D006736 ORTHO05D008459 4.2e-10 68.2 57 63.2
Duzib170G0862 Durio zibethinus HOM05D006736 ORTHO05D008459 5.5e-10 67.8 102 45.1
LjContig00081g0022969 Lotus japonicus HOM05D006736 ORTHO05D008459 5.5e-10 67.8 61 54.1
Phvul.006G059230 Phaseolus vulgaris HOM05D006736 ORTHO05D008459 5.5e-10 67.8 95 46.3
CsaV3_7G023850 Cucumis sativus L. HOM05D006736 ORTHO05D008459 7.2e-10 67.4 59 59.3
CSS0010283 Camellia sinensis var. sinensis HOM05D006736 ORTHO05D008459 1.2e-09 66.6 53 56.6
FAN21G1732 Fragaria x ananassa HOM05D006736 ORTHO05D008459 1.2e-09 66.6 49 69.4
Prupe.6G028200 Prunus persica HOM05D006736 ORTHO05D008459 1.2e-09 66.6 66 60.6
Cpa.g.sc12.109 Carica papaya HOM05D006736 ORTHO05D008459 2.1e-09 65.9 89 44.9
Lalb_Chr15g0082301 Lupinus albus HOM05D006736 ORTHO05D008459 2.1e-09 65.9 53 64.2
TAR624G0983 Trochodendron aralioides HOM05D006736 ORTHO05D008459 2.1e-09 65.9 83 48.2
ClCG09G021530 Citrullus lanatus HOM05D006736 ORTHO05D008459 3.6e-09 65.1 96 43.8
Haze_09864 Corylus avellana HOM05D004577 ORTHO05D005062 3.6e-09 65.1 97 45.4
ClCG10G003900 Citrullus lanatus HOM05D006736 ORTHO05D008459 4.7e-09 64.7 76 50.0
ClCG10G004060 Citrullus lanatus HOM05D006736 ORTHO05D008459 4.7e-09 64.7 76 50.0
CsaV3_3G003890 Cucumis sativus L. HOM05D006736 ORTHO05D008459 6.1e-09 64.3 45 64.4
Oeu036994.1 Olea europaea HOM05D006736 ORTHO05D008459 1.0e-08 63.5 48 62.5
Peaxi162Scf01164g00020 Petunia axillaris HOM05D006736 ORTHO05D008459 1.0e-08 63.5 44 68.2
AT5G55980 Arabidopsis thaliana HOM05D006736 ORTHO05D008459 1.4e-08 63.2 79 48.1
C09p46970 Brassica napus HOM05D006736 ORTHO05D008459 1.4e-08 63.2 65 53.8
BolC9t57545H Brassica oleracea HOM05D006736 ORTHO05D008459 1.4e-08 63.2 65 53.8
CARHR269350 Cardamine hirsuta HOM05D006736 ORTHO05D008459 1.4e-08 63.2 87 48.3
Peaxi162Scf00047g02119 Petunia axillaris HOM05D006736 ORTHO05D008459 1.4e-08 63.2 73 50.7
Sed0023265 Sechium edule HOM05D006736 ORTHO05D008459 3.0e-08 62.0 66 54.5
Solyc07g045200.1 Solanum lycopersicum HOM05D006736 ORTHO05D008459 3.0e-08 62.0 55 60.0
Thhalv10015819m.g Eutrema salsugineum HOM05D006736 ORTHO05D008459 4.0e-08 61.6 63 52.4
Sopen07g023750 Solanum pennellii HOM05D006736 ORTHO05D008459 4.0e-08 61.6 68 52.9
BcaC04g20175 Brassica carinata HOM05D006736 ORTHO05D008459 5.2e-08 61.2 65 52.3
Ciclev10010675m.g Citrus clementina HOM05D006736 ORTHO05D008459 5.2e-08 61.2 87 49.4
RcHm_v2.0_Chr5g0075611 Rosa chinensis HOM05D006736 ORTHO05D008459 6.7e-08 60.8 64 57.8
Sc03g0011540 Simmondsia chinensis HOM05D006736 ORTHO05D008459 8.8e-08 60.5 93 48.4
TPR.G17947 Trifolium pratense HOM05D006736 ORTHO05D008459 8.8e-08 60.5 101 45.5
MELO3C014070.2 Cucumis melo HOM05D006736 ORTHO05D008459 1.5e-07 59.7 101 39.6
Gohir.A13G130900 Gossypium hirsutum HOM05D006736 ORTHO05D008459 1.5e-07 59.7 52 61.5
AL8G31560 Arabidopsis lyrata HOM05D006736 ORTHO05D008459 2.0e-07 59.3 81 44.4
BcaB08g35964 Brassica carinata HOM05D006736 ORTHO05D008459 2.0e-07 59.3 65 52.3
Gohir.D13G134200 Gossypium hirsutum HOM05D006736 ORTHO05D008459 2.6e-07 58.9 52 61.5
Gorai.013G150500 Gossypium raimondii HOM05D006736 ORTHO05D008459 2.6e-07 58.9 52 61.5
Rhsim06G0178800 Rhododendron simsii HOM05D006736 ORTHO05D008459 2.6e-07 58.9 79 39.2
Glyma.14G011700 Glycine max HOM05D006736 ORTHO05D008459 3.3e-07 58.5 58 56.9
Sopen12g002170 Solanum pennellii HOM05D006736 ORTHO05D008459 3.3e-07 58.5 68 51.5
Aa31LG3G11890 Aethionema arabicum HOM05D006736 ORTHO05D008459 4.4e-07 58.2 83 39.8
Carub.0008s1632 Capsella rubella HOM05D006736 ORTHO05D008459 4.4e-07 58.2 89 43.8
Migut.M00067 Erythranthe guttata HOM05D006736 ORTHO05D008459 5.7e-07 57.8 87 44.8
Lalb_Chr20g0114121 Lupinus albus HOM05D006736 ORTHO05D008459 5.7e-07 57.8 106 43.4
A10p13210 Brassica napus HOM05D006736 ORTHO05D008459 9.7e-07 57.0 39 64.1
BraA10t43419Z Brassica rapa HOM05D006736 ORTHO05D008459 9.7e-07 57.0 39 64.1
Ah.06g181490 Amaranthus hybridus HOM05D006736 ORTHO05D008459 1.3e-06 56.6 92 43.5
EL10Ac4g07540 Beta vulgaris HOM05D006736 ORTHO05D008459 1.3e-06 56.6 78 47.4
MD03G1035000 Malus domestica HOM05D006736 ORTHO05D008459 1.3e-06 56.6 54 61.1
Sed0014616 Sechium edule HOM05D006736 ORTHO05D008459 1.3e-06 56.6 55 54.5
Atru.chr2.3834 Acer truncatum HOM05D006736 ORTHO05D008459 2.2e-06 55.8 38 73.7
Sp6g17830 Schrenkiella parvula HOM05D006736 ORTHO05D008459 2.2e-06 55.8 96 45.8
Hma1.2p1_0599F.1_g186970 Hydrangea macrophylla HOM05D006736 ORTHO05D008459 2.8e-06 55.5 87 37.9
TAR629G1528 Trochodendron aralioides HOM05D007247 ORTHO05D009208 3.7e-06 55.1 30 80.0
AT3G13227 Arabidopsis thaliana HOM05D006736 ORTHO05D008459 4.8e-06 54.7 46 60.9
DCAR_008749 Daucus carota HOM05D006736 ORTHO05D008459 4.8e-06 54.7 93 39.8
CSS0024852 Camellia sinensis var. sinensis HOM05D006736 ORTHO05D008459 6.3e-06 54.3 68 50.0
Thhalv10021795m.g Eutrema salsugineum HOM05D006736 ORTHO05D008459 8.2e-06 53.9 46 60.9


User provided reference genes

Program Settings