Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Sabra11G0081100 Salix brachista HOM05D004700 ORTHO05D005576 8.8e-163 577.0 319 100.0
Potri.011G104500 Populus trichocarpa HOM05D004700 ORTHO05D005576 4.4e-146 521.5 304 96.4
Manes.15G098600 Manihot esculenta HOM05D004700 ORTHO05D005576 3.6e-132 475.3 304 83.2
Haze_09248 Corylus avellana HOM05D004700 ORTHO05D005576 4.6e-127 458.4 304 85.9
Ciclev10016084m.g Citrus clementina HOM05D004700 ORTHO05D005576 3.9e-126 455.3 304 84.5
Potri.001G383900 Populus trichocarpa HOM05D004700 ORTHO05D005576 1.5e-125 453.4 310 85.8
Prupe.4G156500 Prunus persica HOM05D004700 ORTHO05D005576 2.5e-125 452.6 306 82.7
Atru.chr2.1968 Acer truncatum HOM05D004700 ORTHO05D005576 9.6e-125 450.7 304 83.2
Atru.chr2.1937 Acer truncatum HOM05D004700 ORTHO05D005576 1.6e-124 449.9 304 83.2
Actinidia03618 Actinidia chinensis HOM05D004700 ORTHO05D005576 1.4e-123 446.8 307 84.4
QL08p024163 Quercus lobata HOM05D004700 ORTHO05D005576 8.9e-123 444.1 308 80.2
GSVIVG01014096001 Vitis vinifera HOM05D004700 ORTHO05D005576 2.6e-122 442.6 305 83.6
TWI38G0400 Tripterygium wilfordii HOM05D004700 ORTHO05D005576 8.4e-121 437.6 306 78.4
Sabra11G0076400 Salix brachista HOM05D004700 ORTHO05D005576 2.4e-120 436.0 261 97.3
THA.LOC104822577 Tarenaya hassleriana HOM05D004700 ORTHO05D005576 5.4e-120 434.9 306 71.9
vmacro11972 Vaccinium macrocarpon HOM05D004700 ORTHO05D005576 5.4e-120 434.9 306 82.7
CSS0040857 Camellia sinensis var. sinensis HOM05D004700 ORTHO05D005576 1.2e-119 433.7 304 81.6
CiPaw.11G155900 Carya illinoinensis HOM05D004700 ORTHO05D005576 1.6e-119 433.3 305 81.6
Manes.03G079300 Manihot esculenta HOM05D004700 ORTHO05D005576 1.6e-119 433.3 304 82.6
Thecc.07G132900 Theobroma cacao HOM05D004700 ORTHO05D005576 2.7e-119 432.6 304 82.2
Actinidia12604 Actinidia chinensis HOM05D004700 ORTHO05D005576 3.5e-119 432.2 320 76.6
Hma1.2p1_0325F.1_g125830 Hydrangea macrophylla HOM05D004700 ORTHO05D005576 1.0e-118 430.6 311 81.7
MELO3C016116.2 Cucumis melo HOM05D004700 ORTHO05D005576 1.3e-118 430.3 305 79.3
Hma1.2p1_0050F.1_g028780 Hydrangea macrophylla HOM05D004700 ORTHO05D005576 5.1e-118 428.3 305 78.7
Nn6g34422 Nelumbo nucifera HOM05D004700 ORTHO05D005576 5.1e-118 428.3 305 78.7
CiPaw.12G110800 Carya illinoinensis HOM05D004700 ORTHO05D005576 9.6e-117 424.1 305 79.3
Cc05_g10710 Coffea canephora HOM05D004700 ORTHO05D005576 2.1e-116 422.9 309 81.6
Eucgr.F03234 Eucalyptus grandis HOM05D004700 ORTHO05D005576 2.1e-116 422.9 304 80.6
Oeu050672.1 Olea europaea HOM05D004700 ORTHO05D005576 2.8e-116 422.5 307 77.2
Phvul.011G168700 Phaseolus vulgaris HOM05D004700 ORTHO05D005576 6.2e-116 421.4 305 69.2
AL1G62040 Arabidopsis lyrata HOM05D004700 ORTHO05D005576 1.1e-115 420.6 307 71.0
Sabra16G0252900 Salix brachista HOM05D004700 ORTHO05D005576 2.4e-115 419.5 337 76.0
Duzib213G0278 Durio zibethinus HOM05D004700 ORTHO05D005576 5.3e-115 418.3 304 79.9
AT1G53490 Arabidopsis thaliana HOM05D004700 ORTHO05D005576 1.2e-114 417.2 307 71.0
Carub.0001s4267 Capsella rubella HOM05D004700 ORTHO05D005576 1.2e-114 417.2 307 70.7
TPR.G16482 Trifolium pratense HOM05D004700 ORTHO05D005576 1.5e-114 416.8 305 69.5
DCAR_013348 Daucus carota HOM05D004700 ORTHO05D005576 2.0e-114 416.4 310 79.4
Thhalv10011691m.g Eutrema salsugineum HOM05D004700 ORTHO05D005576 2.6e-114 416.0 307 71.0
TWI38G0408 Tripterygium wilfordii HOM05D004700 ORTHO05D005576 2.6e-114 416.0 304 69.7
Lalb_Chr19g0133711 Lupinus albus HOM05D004700 ORTHO05D005576 3.4e-114 415.6 313 70.3
MD03G1247600 Malus domestica HOM05D004700 ORTHO05D005576 3.4e-114 415.6 306 77.8
Sed0011117 Sechium edule HOM05D004700 ORTHO05D005576 5.8e-114 414.8 304 78.3
Sp1g40020 Schrenkiella parvula HOM05D004700 ORTHO05D005576 9.9e-114 414.1 307 70.7
Glyma.15G209600 Glycine max HOM05D004700 ORTHO05D005576 2.2e-113 412.9 305 72.5
Migut.H02024 Erythranthe guttata HOM05D004700 ORTHO05D005576 2.9e-113 412.5 309 70.9
Aa31LG10G1720 Aethionema arabicum HOM05D004700 ORTHO05D005576 6.4e-113 411.4 307 72.3
Medtr8g054400 Medicago truncatula HOM05D004700 ORTHO05D005576 8.4e-113 411.0 300 69.3
PGR031G0266 Punica granatum HOM05D004700 ORTHO05D005576 3.2e-112 409.1 304 78.6
BolC3t21472H Brassica oleracea HOM05D004700 ORTHO05D005576 4.2e-112 408.7 308 67.9
BcaC01g01394 Brassica carinata HOM05D004700 ORTHO05D005576 7.1e-112 407.9 308 67.9
EL10Ac4g08417 Beta vulgaris HOM05D004700 ORTHO05D005576 2.1e-111 406.4 305 77.0
C03p91550 Brassica napus HOM05D004700 ORTHO05D005576 2.1e-111 406.4 308 68.2
Gorai.007G331800 Gossypium raimondii HOM05D004700 ORTHO05D005576 2.7e-111 406.0 306 67.0
CANSAT56G3173 Cannabis sativa HOM05D004700 ORTHO05D005576 4.6e-111 405.2 314 67.5
CAN.G68.2 Capsicum annuum HOM05D004700 ORTHO05D005576 4.6e-111 405.2 307 76.9
CsaV3_4G008200 Cucumis sativus L. HOM05D004700 ORTHO05D005576 6.0e-111 404.8 305 77.7
Glyma.09G099300 Glycine max HOM05D004700 ORTHO05D005576 1.1e-109 400.6 305 75.4
HanXRQChr15g0492381 Helianthus annuus HOM05D004700 ORTHO05D005576 1.5e-109 400.2 315 74.9
Lj3g0009226 Lotus japonicus HOM05D004700 ORTHO05D005576 7.3e-109 397.9 305 69.2
Gohir.D11G302900 Gossypium hirsutum HOM05D004700 ORTHO05D005576 9.6e-109 397.5 306 66.7
Lj1A824T63 Lonicera japonica HOM05D004700 ORTHO05D005576 9.6e-109 397.5 283 81.6
SGA_v2.0_scaffold181G39765 Striga asiatica HOM05D004700 ORTHO05D005576 1.6e-108 396.7 311 74.9
Actinidia39420 Actinidia chinensis HOM05D004700 ORTHO05D005576 2.1e-108 396.4 309 72.8
CARHR043720 Cardamine hirsuta HOM05D004700 ORTHO05D005576 2.8e-108 396.0 309 68.0
Gohir.A11G289500 Gossypium hirsutum HOM05D004700 ORTHO05D005576 2.4e-107 392.9 306 65.7
BcaC08g43535 Brassica carinata HOM05D004700 ORTHO05D005576 4.0e-107 392.1 318 71.1
Rhsim06G0211800 Rhododendron simsii HOM05D004700 ORTHO05D005576 9.0e-107 391.0 310 77.7
A05p18220 Brassica napus HOM05D004700 ORTHO05D005576 1.5e-106 390.2 307 64.5
Hund08843 Selenicereus undatus HOM05D004700 ORTHO05D005576 2.0e-106 389.8 307 75.9
BcaB02g10917 Brassica carinata HOM05D004700 ORTHO05D005576 3.4e-106 389.0 310 72.3
ECA236G3615 Erigeron canadensis HOM05D004700 ORTHO05D005576 1.3e-105 387.1 338 62.1
MBI06_g08516_MAGBIO Magnolia biondii HOM05D004700 ORTHO05D005576 2.2e-105 386.3 320 73.4
PSO541G3766 Papaver somniferum HOM05D004700 ORTHO05D005576 2.9e-105 386.0 305 73.8
ATR0602G050 Amborella trichopoda HOM05D004700 ORTHO05D005576 3.2e-104 382.5 319 71.5
Nitab4.5_0000348g0050 Nicotiana tabacum HOM05D004700 ORTHO05D005576 3.2e-104 382.5 307 74.3
PSO675G6346 Papaver somniferum HOM05D004700 ORTHO05D005576 3.2e-104 382.5 307 73.9
Sopen08g005940 Solanum pennellii HOM05D004700 ORTHO05D005576 5.4e-104 381.7 308 74.0
BcaB07g33326 Brassica carinata HOM05D004700 ORTHO05D005576 1.2e-103 380.6 308 63.3
Os02g0232100 Oryza sativa ssp. japonica HOM05D004700 ORTHO05D005576 8.7e-102 374.4 306 67.6
Dinv26707 Davidia involucrata HOM05D004700 ORTHO05D005576 1.9e-101 373.2 305 74.4
A06p00990 Brassica napus HOM05D004700 ORTHO05D005576 3.3e-101 372.5 355 61.1
BraA06t23327Z Brassica rapa HOM05D004700 ORTHO05D005576 3.3e-101 372.5 355 61.1
TAR624G0400 Trochodendron aralioides HOM05D004700 ORTHO05D005576 2.8e-100 369.4 280 80.4
Ca_22302_v3 Cicer arietinum L. HOM05D004700 ORTHO05D005576 8.1e-100 367.9 305 62.3
FAN11G3801 Fragaria x ananassa HOM05D004700 ORTHO05D005576 3.4e-98 362.5 319 68.3
unitig_746.g26835 Utricularia gibba HOM05D004700 ORTHO05D005576 3.4e-98 362.5 355 54.9
Solyc08g015770.4 Solanum lycopersicum HOM05D004700 ORTHO05D005576 4.5e-98 362.1 289 76.5
FAN16G2451 Fragaria x ananassa HOM05D004700 ORTHO05D005576 1.9e-96 356.7 318 67.9
MD11G1269900 Malus domestica HOM05D004700 ORTHO05D005576 3.2e-96 355.9 322 66.5
BraA08t32205Z Brassica rapa HOM05D004700 ORTHO05D005576 5.5e-96 355.1 305 60.7
Sc03g0010710 Simmondsia chinensis HOM05D004700 ORTHO05D005576 1.2e-95 354.0 282 78.4
RhsimUnG0206700 Rhododendron simsii HOM05D004700 ORTHO05D005576 2.1e-95 353.2 311 71.4
C06p09250 Brassica napus HOM05D004700 ORTHO05D005576 7.9e-95 351.3 349 62.5
BolC6t36002H Brassica oleracea HOM05D004700 ORTHO05D005576 7.9e-95 351.3 349 62.5
arahy.Tifrunner.gnm1.ann1.7PP38G Arachis hypogaea HOM05D004700 ORTHO05D005576 5.1e-94 348.6 266 77.8
BraA08t32208Z Brassica rapa HOM05D004700 ORTHO05D005576 6.7e-94 348.2 308 60.7
Psat4g157000 Pisum sativum HOM05D004700 ORTHO05D005576 1.1e-93 347.4 305 62.6
RcHm_v2.0_Chr5g0029521 Rosa chinensis HOM05D004700 ORTHO05D005576 3.3e-93 345.9 306 70.3
arahy.Tifrunner.gnm1.ann1.DP9AR5 Arachis hypogaea HOM05D004700 ORTHO05D005576 4.3e-93 345.5 275 74.9
FvH4_3g17740 Fragaria vesca HOM05D004700 ORTHO05D005576 2.4e-91 339.7 306 70.3
CSS0048020 Camellia sinensis var. sinensis HOM05D004700 ORTHO05D005576 1.2e-90 337.4 256 80.9
CSS0037390 Camellia sinensis var. sinensis HOM05D004700 ORTHO05D005576 4.5e-90 335.5 256 80.5
Nitab4.5_0012258g0020 Nicotiana tabacum HOM05D004700 ORTHO05D005576 4.5e-90 335.5 285 74.0
Zm00001eb239370 Zea mays HOM05D004700 ORTHO05D005576 5.8e-90 335.1 306 57.8
Cfa019516 Carpinus fangiana HOM05D004700 ORTHO05D005576 1.1e-88 330.9 241 83.8
VMungo1127G0687 Vigna mungo HOM05D004700 ORTHO05D005576 2.7e-87 326.2 257 65.0
Nitab4.5_0000092g0360 Nicotiana tabacum HOM05D004700 ORTHO05D005576 7.4e-85 318.2 263 65.0
Aqoxy1G01902 Aquilegia oxysepala HOM05D004700 ORTHO05D005576 9.7e-85 317.8 214 86.4
COL.COLO4_17473 Corchorus olitorius HOM05D004700 ORTHO05D005576 8.2e-84 314.7 231 69.7
ClCG07G010130 Citrullus lanatus HOM05D004700 ORTHO05D005576 1.4e-83 313.9 271 62.4
Sed0005766 Sechium edule HOM05D004700 ORTHO05D005576 3.1e-83 312.8 214 86.4
Cpa.g.sc77.62 Carica papaya HOM05D004700 ORTHO05D005576 2.2e-81 306.6 231 68.8
Sabra11G0075900 Salix brachista HOM05D004700 ORTHO05D005576 3.8e-81 305.8 214 89.3
BcaB04g17077 Brassica carinata HOM05D004700 ORTHO05D005576 6.1e-79 298.5 296 55.7
Peaxi162Scf00111g01325 Petunia axillaris HOM05D004700 ORTHO05D005576 7.7e-74 281.6 250 62.4
MSTRG.12860 Avicennia marina HOM05D004700 ORTHO05D005576 5.5e-72 275.4 237 62.9
PGSC0003DMG400013718 Solanum tuberosum HOM05D004700 ORTHO05D005576 9.4e-72 274.6 234 76.1
AUR62039578 Chenopodium quinoa HOM05D004700 ORTHO05D005576 1.0e-70 271.2 231 74.9
Lsat_1_v5_gn_7_101801 Lactuca sativa HOM05D004700 ORTHO05D005576 5.1e-70 268.9 295 54.6
AUR62019650 Chenopodium quinoa HOM05D004700 ORTHO05D005576 6.7e-70 268.5 231 74.5
DCAR_021040 Daucus carota HOM05D004700 ORTHO05D005576 1.5e-69 267.3 240 74.6
CDE06G2539 Ceratophyllum demersum HOM05D004700 ORTHO05D005576 3.3e-69 266.2 244 71.3
Dinv13363 Davidia involucrata HOM05D004700 ORTHO05D005576 1.3e-68 264.2 193 84.5
Peaxi162Scf00000g00759 Petunia axillaris HOM05D004700 ORTHO05D005576 4.0e-62 242.7 233 71.2
Ah.04g164030 Amaranthus hybridus HOM05D004700 ORTHO05D005576 1.5e-61 240.7 231 69.3
BraA05t20718Z Brassica rapa HOM05D004700 ORTHO05D005576 2.6e-61 240.0 136 83.1
BcaC08g44093 Brassica carinata HOM05D004700 ORTHO05D005576 4.4e-61 239.2 241 56.4
Ah.06g187700 Amaranthus hybridus HOM05D004700 ORTHO05D005576 6.3e-60 235.3 233 70.0
C06p14980 Brassica napus HOM05D004700 ORTHO05D005576 5.3e-59 232.3 233 56.7
BolC6t36675H Brassica oleracea HOM05D004700 ORTHO05D005576 5.3e-59 232.3 233 56.7
Sabra11G0075300 Salix brachista HOM05D004700 ORTHO05D005576 6.5e-57 225.3 161 75.8
Oeu010032.1 Olea europaea HOM05D004700 ORTHO05D005576 3.2e-56 223.0 294 44.9
Sabra11G0075500 Salix brachista HOM05D004700 ORTHO05D005576 1.6e-55 220.7 149 98.0
FAN25G1946 Fragaria x ananassa HOM05D004700 ORTHO05D005576 4.4e-53 212.6 245 64.1
Sabra11G0076300 Salix brachista HOM05D004700 ORTHO05D005576 3.1e-51 206.5 172 66.3
Gorai.002G047100 Gossypium raimondii HOM05D004700 ORTHO05D005576 7.7e-50 201.8 243 58.0
CDE02G3773 Ceratophyllum demersum HOM05D004700 ORTHO05D005576 8.8e-46 188.3 287 43.6
Sc07g0002390 Simmondsia chinensis HOM05D004700 ORTHO05D005576 8.8e-46 188.3 146 80.8
AagrBONN_evm.TU.Sc2ySwM_362.885 Anthoceros agrestis HOM05D004700 ORTHO05D005576 9.8e-45 184.9 295 48.1
Mapoly0001s0250 Marchantia polymorpha HOM05D004700 ORTHO05D005576 2.8e-44 183.3 320 43.4
Pp3c8_15890 Physcomitrium patens HOM05D004700 ORTHO05D005576 2.2e-36 157.1 327 34.6
Gohir.D01G038350 Gossypium hirsutum HOM05D004700 ORTHO05D005576 5.4e-35 152.5 156 71.2
SEGI_00597 Sequoiadendron giganteum HOM05D004700 ORTHO05D005576 7.0e-35 152.1 245 42.0
Actinidia04619 Actinidia chinensis HOM05D004700 ORTHO05D005576 9.2e-35 151.8 74 89.2
Actinidia04620 Actinidia chinensis HOM05D004700 ORTHO05D005576 3.6e-31 139.8 167 49.7
Zm00001eb164550 Zea mays HOM05D004700 ORTHO05D005576 2.0e-29 134.0 73 78.1
Ah.06g187690 Amaranthus hybridus HOM05D004700 ORTHO05D000031 6.4e-28 129.0 73 79.5
Aqoxy1G01901 Aquilegia oxysepala HOM05D004700 ORTHO05D005576 1.9e-24 117.5 90 66.7
Zm00001eb046150 Zea mays HOM05D004700 ORTHO05D005576 6.8e-22 109.0 59 76.3
Zm00001eb337320 Zea mays HOM05D004700 ORTHO05D005576 2.1e-18 97.4 145 39.3
Zm00001eb352830 Zea mays HOM05D004700 ORTHO05D005576 3.0e-17 93.6 50 76.0
Cre03.g161500 Chlamydomonas reinhardtii HOM05D004700 ORTHO05D005576 5.1e-17 92.8 132 34.1
Zm00001eb364990 Zea mays HOM05D001185 ORTHO05D005576 4.4e-13 79.7 131 38.9
Sc07g0002380 Simmondsia chinensis HOM05D004700 ORTHO05D005576 5.8e-13 79.3 100 49.0
Nitab4.5_0000244g0440 Nicotiana tabacum HOM05D000856 ORTHO05D001792 3.7e-12 76.6 83 55.4
Lsat_1_v5_gn_6_80301 Lactuca sativa HOM05D003665 ORTHO05D004387 7.8e-10 68.9 47 80.9
Lsat_1_v5_gn_8_31621 Lactuca sativa HOM05D003665 ORTHO05D004387 2.3e-09 67.4 109 47.7
Peaxi162Scf00000g00758 Petunia axillaris HOM05D004700 ORTHO05D005576 3.3e-08 63.5 100 39.0


User provided reference genes

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