Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Sabra11G0075900 Salix brachista HOM05D004700 ORTHO05D005576 2.7e-99 365.5 216 100.0
Sabra11G0081100 Salix brachista HOM05D004700 ORTHO05D005576 3.0e-82 308.9 214 89.3
Potri.011G104500 Populus trichocarpa HOM05D004700 ORTHO05D005576 1.5e-81 306.6 214 88.3
Actinidia03618 Actinidia chinensis HOM05D004700 ORTHO05D005576 1.3e-72 276.9 213 83.1
Ciclev10016084m.g Citrus clementina HOM05D004700 ORTHO05D005576 2.2e-72 276.2 214 81.8
Thecc.07G132900 Theobroma cacao HOM05D004700 ORTHO05D005576 2.9e-72 275.8 219 79.5
Manes.15G098600 Manihot esculenta HOM05D004700 ORTHO05D005576 6.4e-72 274.6 214 74.3
Manes.03G079300 Manihot esculenta HOM05D004700 ORTHO05D005576 8.3e-72 274.2 219 78.5
THA.LOC104822577 Tarenaya hassleriana HOM05D004700 ORTHO05D005576 8.3e-72 274.2 214 64.5
Potri.001G383900 Populus trichocarpa HOM05D004700 ORTHO05D005576 1.1e-71 273.9 214 82.2
CiPaw.11G155900 Carya illinoinensis HOM05D004700 ORTHO05D005576 1.8e-71 273.1 219 77.6
Gohir.A11G289500 Gossypium hirsutum HOM05D004700 ORTHO05D005576 3.2e-71 272.3 214 65.0
Gohir.D11G302900 Gossypium hirsutum HOM05D004700 ORTHO05D005576 3.2e-71 272.3 214 65.0
Hma1.2p1_0050F.1_g028780 Hydrangea macrophylla HOM05D004700 ORTHO05D005576 4.1e-71 271.9 219 73.1
AL1G62040 Arabidopsis lyrata HOM05D004700 ORTHO05D005576 7.0e-71 271.2 215 66.5
TWI38G0408 Tripterygium wilfordii HOM05D004700 ORTHO05D005576 7.0e-71 271.2 219 61.6
Aa31LG10G1720 Aethionema arabicum HOM05D004700 ORTHO05D005576 2.0e-70 269.6 215 69.8
vmacro11972 Vaccinium macrocarpon HOM05D004700 ORTHO05D005576 2.0e-70 269.6 214 80.8
CARHR043720 Cardamine hirsuta HOM05D004700 ORTHO05D005576 2.7e-70 269.2 220 64.5
QL08p024163 Quercus lobata HOM05D004700 ORTHO05D005576 4.6e-70 268.5 214 75.7
AT1G53490 Arabidopsis thaliana HOM05D004700 ORTHO05D005576 5.9e-70 268.1 215 66.5
Carub.0001s4267 Capsella rubella HOM05D004700 ORTHO05D005576 5.9e-70 268.1 215 66.0
Haze_09248 Corylus avellana HOM05D004700 ORTHO05D005576 7.8e-70 267.7 214 79.9
Atru.chr2.1968 Acer truncatum HOM05D004700 ORTHO05D005576 1.0e-69 267.3 214 79.4
Atru.chr2.1937 Acer truncatum HOM05D004700 ORTHO05D005576 1.7e-69 266.5 214 79.4
Aqoxy1G01902 Aquilegia oxysepala HOM05D004700 ORTHO05D005576 3.0e-69 265.8 214 76.6
Thhalv10011691m.g Eutrema salsugineum HOM05D004700 ORTHO05D005576 6.6e-69 264.6 215 65.6
BolC3t21472H Brassica oleracea HOM05D004700 ORTHO05D005576 8.6e-69 264.2 215 63.3
Prupe.4G156500 Prunus persica HOM05D004700 ORTHO05D005576 8.6e-69 264.2 214 76.2
Actinidia12604 Actinidia chinensis HOM05D004700 ORTHO05D005576 1.1e-68 263.8 216 74.1
Duzib213G0278 Durio zibethinus HOM05D004700 ORTHO05D005576 1.1e-68 263.8 219 77.2
Rhsim06G0211800 Rhododendron simsii HOM05D004700 ORTHO05D005576 1.1e-68 263.8 223 76.2
BcaC01g01394 Brassica carinata HOM05D004700 ORTHO05D005576 1.5e-68 263.5 215 63.3
Cc05_g10710 Coffea canephora HOM05D004700 ORTHO05D005576 1.5e-68 263.5 219 77.2
Sp1g40020 Schrenkiella parvula HOM05D004700 ORTHO05D005576 1.9e-68 263.1 215 65.6
GSVIVG01014096001 Vitis vinifera HOM05D004700 ORTHO05D005576 2.5e-68 262.7 214 79.0
Phvul.011G168700 Phaseolus vulgaris HOM05D004700 ORTHO05D005576 7.3e-68 261.2 214 62.6
DCAR_013348 Daucus carota HOM05D004700 ORTHO05D005576 9.5e-68 260.8 214 79.0
C03p91550 Brassica napus HOM05D004700 ORTHO05D005576 1.2e-67 260.4 215 62.8
Sed0011117 Sechium edule HOM05D004700 ORTHO05D005576 1.2e-67 260.4 214 74.8
Nn6g34422 Nelumbo nucifera HOM05D004700 ORTHO05D005576 1.6e-67 260.0 214 74.8
Lj3g0009226 Lotus japonicus HOM05D004700 ORTHO05D005576 2.8e-67 259.2 219 63.0
arahy.Tifrunner.gnm1.ann1.DP9AR5 Arachis hypogaea HOM05D004700 ORTHO05D005576 4.7e-67 258.5 225 73.3
TPR.G16482 Trifolium pratense HOM05D004700 ORTHO05D005576 4.7e-67 258.5 216 61.1
Sed0005766 Sechium edule HOM05D004700 ORTHO05D005576 6.2e-67 258.1 214 76.2
MELO3C016116.2 Cucumis melo HOM05D004700 ORTHO05D005576 8.0e-67 257.7 214 73.8
TWI38G0400 Tripterygium wilfordii HOM05D004700 ORTHO05D005576 8.0e-67 257.7 214 72.0
Gorai.007G331800 Gossypium raimondii HOM05D004700 ORTHO05D005576 1.0e-66 257.3 214 63.1
CsaV3_4G008200 Cucumis sativus L. HOM05D004700 ORTHO05D005576 1.4e-66 256.9 219 72.1
PSO541G3766 Papaver somniferum HOM05D004700 ORTHO05D005576 1.4e-66 256.9 219 71.7
BcaB02g10917 Brassica carinata HOM05D004700 ORTHO05D005576 2.3e-66 256.1 215 72.6
Medtr8g054400 Medicago truncatula HOM05D004700 ORTHO05D005576 4.0e-66 255.4 201 63.2
ATR0602G050 Amborella trichopoda HOM05D004700 ORTHO05D005576 6.8e-66 254.6 212 74.1
Hma1.2p1_0325F.1_g125830 Hydrangea macrophylla HOM05D004700 ORTHO05D005576 8.9e-66 254.2 214 78.5
Lalb_Chr19g0133711 Lupinus albus HOM05D004700 ORTHO05D005576 8.9e-66 254.2 221 62.4
Eucgr.F03234 Eucalyptus grandis HOM05D004700 ORTHO05D005576 1.5e-65 253.4 214 79.0
Actinidia39420 Actinidia chinensis HOM05D004700 ORTHO05D005576 2.0e-65 253.1 211 70.1
A05p18220 Brassica napus HOM05D004700 ORTHO05D005576 2.0e-65 253.1 215 60.0
Migut.H02024 Erythranthe guttata HOM05D004700 ORTHO05D005576 2.6e-65 252.7 214 65.9
Glyma.15G209600 Glycine max HOM05D004700 ORTHO05D005576 4.4e-65 251.9 205 69.8
HanXRQChr15g0492381 Helianthus annuus HOM05D004700 ORTHO05D005576 5.8e-65 251.5 214 76.6
BcaC08g43535 Brassica carinata HOM05D004700 ORTHO05D005576 1.3e-64 250.4 215 70.7
CSS0040857 Camellia sinensis var. sinensis HOM05D004700 ORTHO05D005576 1.3e-64 250.4 214 77.1
arahy.Tifrunner.gnm1.ann1.7PP38G Arachis hypogaea HOM05D004700 ORTHO05D005576 1.7e-64 250.0 216 75.0
CiPaw.12G110800 Carya illinoinensis HOM05D004700 ORTHO05D005576 1.7e-64 250.0 214 76.2
Oeu050672.1 Olea europaea HOM05D004700 ORTHO05D005576 3.7e-64 248.8 214 70.6
MD03G1247600 Malus domestica HOM05D004700 ORTHO05D005576 1.9e-63 246.5 214 72.9
Os02g0232100 Oryza sativa ssp. japonica HOM05D004700 ORTHO05D005576 2.4e-63 246.1 216 64.4
PSO675G6346 Papaver somniferum HOM05D004700 ORTHO05D005576 3.2e-63 245.7 215 74.4
BraA08t32205Z Brassica rapa HOM05D004700 ORTHO05D005576 7.0e-63 244.6 212 59.4
CANSAT56G3173 Cannabis sativa HOM05D004700 ORTHO05D005576 9.2e-63 244.2 206 61.7
ECA236G3615 Erigeron canadensis HOM05D004700 ORTHO05D005576 9.2e-63 244.2 230 57.4
Glyma.09G099300 Glycine max HOM05D004700 ORTHO05D005576 1.6e-62 243.4 214 73.4
A06p00990 Brassica napus HOM05D004700 ORTHO05D005576 3.5e-62 242.3 250 59.6
BraA06t23327Z Brassica rapa HOM05D004700 ORTHO05D005576 3.5e-62 242.3 250 59.6
SGA_v2.0_scaffold181G39765 Striga asiatica HOM05D004700 ORTHO05D005576 4.6e-62 241.9 214 73.8
C06p09250 Brassica napus HOM05D004700 ORTHO05D005576 7.8e-62 241.1 246 62.6
BolC6t36002H Brassica oleracea HOM05D004700 ORTHO05D005576 7.8e-62 241.1 246 62.6
EL10Ac4g08417 Beta vulgaris HOM05D004700 ORTHO05D005576 1.3e-61 240.4 214 73.8
CAN.G68.2 Capsicum annuum HOM05D004700 ORTHO05D005576 1.3e-61 240.4 214 74.3
Sopen08g005940 Solanum pennellii HOM05D004700 ORTHO05D005576 2.3e-61 239.6 219 72.1
Sabra16G0252900 Salix brachista HOM05D004700 ORTHO05D005576 3.0e-61 239.2 241 69.3
BcaB07g33326 Brassica carinata HOM05D004700 ORTHO05D005576 1.5e-60 236.9 215 56.3
MBI06_g08516_MAGBIO Magnolia biondii HOM05D004700 ORTHO05D005576 3.3e-60 235.7 229 70.7
Psat4g157000 Pisum sativum HOM05D004700 ORTHO05D005576 3.3e-60 235.7 216 59.7
PGR031G0266 Punica granatum HOM05D004700 ORTHO05D005576 4.3e-60 235.3 214 73.4
Hund08843 Selenicereus undatus HOM05D004700 ORTHO05D005576 9.5e-60 234.2 214 72.4
Zm00001eb239370 Zea mays HOM05D004700 ORTHO05D005576 1.6e-59 233.4 219 54.8
BraA08t32208Z Brassica rapa HOM05D004700 ORTHO05D005576 6.2e-59 231.5 212 58.0
Ca_22302_v3 Cicer arietinum L. HOM05D004700 ORTHO05D005576 2.6e-57 226.1 219 53.0
BcaB04g17077 Brassica carinata HOM05D004700 ORTHO05D005576 2.2e-56 223.0 220 55.5
Dinv13363 Davidia involucrata HOM05D004700 ORTHO05D005576 4.9e-56 221.9 193 77.7
Lj1A824T63 Lonicera japonica HOM05D004700 ORTHO05D005576 1.6e-54 216.9 190 74.2
Nitab4.5_0000348g0050 Nicotiana tabacum HOM05D004700 ORTHO05D005576 2.7e-54 216.1 214 69.2
RcHm_v2.0_Chr5g0029521 Rosa chinensis HOM05D004700 ORTHO05D005576 1.3e-53 213.8 219 66.2
FAN16G2451 Fragaria x ananassa HOM05D004700 ORTHO05D005576 8.6e-53 211.1 215 65.1
FvH4_3g17740 Fragaria vesca HOM05D004700 ORTHO05D005576 1.1e-52 210.7 219 66.7
FAN11G3801 Fragaria x ananassa HOM05D004700 ORTHO05D005576 1.1e-52 210.7 215 65.1
Sabra11G0076400 Salix brachista HOM05D004700 ORTHO05D005576 1.5e-52 210.3 171 85.4
TAR624G0400 Trochodendron aralioides HOM05D004700 ORTHO05D005576 7.3e-52 208.0 189 77.2
Dinv26707 Davidia involucrata HOM05D004700 ORTHO05D005576 8.1e-51 204.5 126 78.6
Sc03g0010710 Simmondsia chinensis HOM05D004700 ORTHO05D005576 1.4e-50 203.8 190 77.4
MD11G1269900 Malus domestica HOM05D004700 ORTHO05D005576 9.9e-49 197.6 220 59.5
BraA05t20718Z Brassica rapa HOM05D004700 ORTHO05D005576 1.3e-48 197.2 133 72.2
unitig_746.g26835 Utricularia gibba HOM05D004700 ORTHO05D005576 1.3e-48 197.2 243 45.7
Sabra11G0075500 Salix brachista HOM05D004700 ORTHO05D005576 2.2e-48 196.4 162 87.0
RhsimUnG0206700 Rhododendron simsii HOM05D004700 ORTHO05D005576 7.1e-47 191.4 220 65.0
Solyc08g015770.4 Solanum lycopersicum HOM05D004700 ORTHO05D005576 1.6e-46 190.3 195 72.8
Sabra11G0076300 Salix brachista HOM05D004700 ORTHO05D005576 1.1e-44 184.1 185 58.9
Nitab4.5_0012258g0020 Nicotiana tabacum HOM05D004700 ORTHO05D005576 7.6e-41 171.4 193 68.4
VMungo1127G0687 Vigna mungo HOM05D004700 ORTHO05D005576 9.3e-39 164.5 167 54.5
CSS0037390 Camellia sinensis var. sinensis HOM05D004700 ORTHO05D005576 1.3e-37 160.6 165 76.4
CSS0048020 Camellia sinensis var. sinensis HOM05D004700 ORTHO05D005576 1.3e-37 160.6 165 76.4
Gorai.002G047100 Gossypium raimondii HOM05D004700 ORTHO05D005576 8.7e-37 157.9 208 55.8
Nitab4.5_0000092g0360 Nicotiana tabacum HOM05D004700 ORTHO05D005576 6.2e-35 151.8 170 52.9
ClCG07G010130 Citrullus lanatus HOM05D004700 ORTHO05D005576 1.8e-34 150.2 182 48.4
Actinidia04619 Actinidia chinensis HOM05D004700 ORTHO05D005576 3.1e-34 149.4 73 89.0
AagrBONN_evm.TU.Sc2ySwM_362.885 Anthoceros agrestis HOM05D004700 ORTHO05D005576 1.5e-33 147.1 216 54.6
Cfa019516 Carpinus fangiana HOM05D004700 ORTHO05D005576 5.8e-33 145.2 151 76.8
Lsat_1_v5_gn_7_101801 Lactuca sativa HOM05D004700 ORTHO05D005576 7.6e-33 144.8 188 48.4
Sc07g0002390 Simmondsia chinensis HOM05D004700 ORTHO05D005576 3.8e-32 142.5 146 69.2
COL.COLO4_17473 Corchorus olitorius HOM05D004700 ORTHO05D005576 2.4e-31 139.8 126 61.1
Cpa.g.sc77.62 Carica papaya HOM05D004700 ORTHO05D005576 2.7e-30 136.3 126 59.5
Mapoly0001s0250 Marchantia polymorpha HOM05D004700 ORTHO05D005576 1.8e-29 133.7 215 49.8
C06p14980 Brassica napus HOM05D004700 ORTHO05D005576 2.3e-29 133.3 146 50.7
BolC6t36675H Brassica oleracea HOM05D004700 ORTHO05D005576 2.3e-29 133.3 146 50.7
Zm00001eb164550 Zea mays HOM05D004700 ORTHO05D005576 5.1e-29 132.1 94 63.8
BcaC08g44093 Brassica carinata HOM05D004700 ORTHO05D005576 6.7e-29 131.7 163 49.1
Ah.06g187690 Amaranthus hybridus HOM05D004700 ORTHO05D000031 3.3e-28 129.4 91 65.9
Sabra11G0075300 Salix brachista HOM05D004700 ORTHO05D005576 1.6e-27 127.1 118 63.6
DCAR_021040 Daucus carota HOM05D004700 ORTHO05D005576 1.1e-26 124.4 126 81.7
Peaxi162Scf00111g01325 Petunia axillaris HOM05D004700 ORTHO05D005576 2.4e-26 123.2 153 50.3
Oeu010032.1 Olea europaea HOM05D004700 ORTHO05D005576 9.0e-26 121.3 197 40.1
AUR62019650 Chenopodium quinoa HOM05D004700 ORTHO05D005576 1.2e-25 120.9 126 77.8
Pp3c8_15890 Physcomitrium patens HOM05D004700 ORTHO05D005576 1.5e-25 120.6 113 51.3
MSTRG.12860 Avicennia marina HOM05D004700 ORTHO05D005576 2.0e-25 120.2 126 52.4
AUR62039578 Chenopodium quinoa HOM05D004700 ORTHO05D005576 5.8e-25 118.6 126 77.0
CDE06G2539 Ceratophyllum demersum HOM05D004700 ORTHO05D005576 7.6e-25 118.2 152 66.4
Ah.06g187700 Amaranthus hybridus HOM05D004700 ORTHO05D005576 1.3e-24 117.5 126 77.8
Gohir.D01G038350 Gossypium hirsutum HOM05D004700 ORTHO05D005576 1.7e-24 117.1 134 67.9
PGSC0003DMG400013718 Solanum tuberosum HOM05D004700 ORTHO05D005576 8.4e-24 114.8 126 79.4
Peaxi162Scf00000g00759 Petunia axillaris HOM05D004700 ORTHO05D005576 9.3e-23 111.3 126 79.4
Zm00001eb046150 Zea mays HOM05D004700 ORTHO05D005576 1.8e-21 107.1 59 74.6
CDE02G3773 Ceratophyllum demersum HOM05D004700 ORTHO05D005576 6.7e-21 105.1 189 38.1
Zm00001eb337320 Zea mays HOM05D004700 ORTHO05D005576 8.1e-19 98.2 131 42.7
Ah.04g164030 Amaranthus hybridus HOM05D004700 ORTHO05D005576 6.9e-18 95.1 126 69.0
Zm00001eb352830 Zea mays HOM05D004700 ORTHO05D005576 2.2e-16 90.1 118 43.2
SEGI_00597 Sequoiadendron giganteum HOM05D004700 ORTHO05D005576 6.0e-14 82.0 124 40.3
FAN25G1946 Fragaria x ananassa HOM05D004700 ORTHO05D005576 3.0e-13 79.7 141 61.0
Cre03.g161500 Chlamydomonas reinhardtii HOM05D004700 ORTHO05D005576 7.4e-12 75.1 128 30.5
Peaxi162Scf00000g00758 Petunia axillaris HOM05D004700 ORTHO05D005576 3.1e-10 69.7 104 39.4
Lsat_1_v5_gn_6_80301 Lactuca sativa HOM05D003665 ORTHO05D004387 2.2e-08 63.5 47 76.6
Lsat_1_v5_gn_8_31621 Lactuca sativa HOM05D003665 ORTHO05D004387 5.0e-08 62.4 45 77.8


User provided reference genes

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