Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Sabra11G0075500 Salix brachista HOM05D004700 ORTHO05D005576 1.3e-64 250.0 162 100.0
Sabra11G0076400 Salix brachista HOM05D004700 ORTHO05D005576 2.1e-56 222.6 149 98.7
Sabra11G0081100 Salix brachista HOM05D004700 ORTHO05D005576 6.3e-56 221.1 149 98.0
Potri.011G104500 Populus trichocarpa HOM05D004700 ORTHO05D005576 9.0e-55 217.2 149 96.6
Hma1.2p1_0050F.1_g028780 Hydrangea macrophylla HOM05D004700 ORTHO05D005576 2.8e-48 195.7 154 79.2
Manes.15G098600 Manihot esculenta HOM05D004700 ORTHO05D005576 2.8e-48 195.7 149 80.5
Gohir.A11G289500 Gossypium hirsutum HOM05D004700 ORTHO05D005576 6.3e-48 194.5 149 65.8
Gohir.D11G302900 Gossypium hirsutum HOM05D004700 ORTHO05D005576 6.3e-48 194.5 149 65.8
Gorai.007G331800 Gossypium raimondii HOM05D004700 ORTHO05D005576 6.3e-48 194.5 149 65.8
Sabra11G0075900 Salix brachista HOM05D004700 ORTHO05D005576 6.3e-48 194.5 162 87.0
Haze_09248 Corylus avellana HOM05D004700 ORTHO05D005576 1.4e-47 193.4 149 88.6
THA.LOC104822577 Tarenaya hassleriana HOM05D004700 ORTHO05D005576 1.4e-47 193.4 149 67.1
TWI38G0408 Tripterygium wilfordii HOM05D004700 ORTHO05D005576 1.4e-47 193.4 154 63.0
CiPaw.11G155900 Carya illinoinensis HOM05D004700 ORTHO05D005576 2.4e-47 192.6 154 84.4
Cc05_g10710 Coffea canephora HOM05D004700 ORTHO05D005576 4.1e-47 191.8 154 85.7
Sabra11G0076300 Salix brachista HOM05D004700 ORTHO05D005576 5.3e-47 191.4 162 66.0
Manes.03G079300 Manihot esculenta HOM05D004700 ORTHO05D005576 1.5e-46 189.9 154 83.8
Ciclev10016084m.g Citrus clementina HOM05D004700 ORTHO05D005576 2.0e-46 189.5 149 87.2
Actinidia03618 Actinidia chinensis HOM05D004700 ORTHO05D005576 2.6e-46 189.1 148 87.8
Cfa019516 Carpinus fangiana HOM05D004700 ORTHO05D005576 5.9e-46 188.0 149 86.6
QL08p024163 Quercus lobata HOM05D004700 ORTHO05D005576 1.7e-45 186.4 149 81.9
Actinidia12604 Actinidia chinensis HOM05D004700 ORTHO05D005576 2.2e-45 186.0 151 79.5
Lj1A824T63 Lonicera japonica HOM05D004700 ORTHO05D005576 3.8e-45 185.3 149 80.5
AL1G62040 Arabidopsis lyrata HOM05D004700 ORTHO05D005576 5.0e-45 184.9 150 67.3
Thecc.07G132900 Theobroma cacao HOM05D004700 ORTHO05D005576 5.0e-45 184.9 154 81.2
Aqoxy1G01902 Aquilegia oxysepala HOM05D004700 ORTHO05D005576 6.5e-45 184.5 149 83.2
CARHR043720 Cardamine hirsuta HOM05D004700 ORTHO05D005576 8.5e-45 184.1 155 65.2
PSO541G3766 Papaver somniferum HOM05D004700 ORTHO05D005576 1.4e-44 183.3 154 77.9
Prupe.4G156500 Prunus persica HOM05D004700 ORTHO05D005576 2.5e-44 182.6 149 81.9
Sed0011117 Sechium edule HOM05D004700 ORTHO05D005576 3.2e-44 182.2 149 81.2
AT1G53490 Arabidopsis thaliana HOM05D004700 ORTHO05D005576 4.2e-44 181.8 150 67.3
Carub.0001s4267 Capsella rubella HOM05D004700 ORTHO05D005576 4.2e-44 181.8 150 66.7
Aa31LG10G1720 Aethionema arabicum HOM05D004700 ORTHO05D005576 5.5e-44 181.4 150 70.7
Thhalv10011691m.g Eutrema salsugineum HOM05D004700 ORTHO05D005576 7.2e-44 181.0 150 66.7
Sed0005766 Sechium edule HOM05D004700 ORTHO05D005576 7.2e-44 181.0 149 84.6
Lalb_Chr19g0133711 Lupinus albus HOM05D004700 ORTHO05D005576 9.4e-44 180.6 149 64.4
MELO3C016116.2 Cucumis melo HOM05D004700 ORTHO05D005576 1.2e-43 180.3 149 79.2
Nn6g34422 Nelumbo nucifera HOM05D004700 ORTHO05D005576 1.2e-43 180.3 149 80.5
Potri.001G383900 Populus trichocarpa HOM05D004700 ORTHO05D005576 1.2e-43 180.3 149 85.9
TWI38G0400 Tripterygium wilfordii HOM05D004700 ORTHO05D005576 1.6e-43 179.9 149 77.2
GSVIVG01014096001 Vitis vinifera HOM05D004700 ORTHO05D005576 1.6e-43 179.9 149 85.2
ATR0602G050 Amborella trichopoda HOM05D004700 ORTHO05D005576 2.1e-43 179.5 147 83.7
Lj3g0009226 Lotus japonicus HOM05D004700 ORTHO05D005576 2.7e-43 179.1 154 64.9
Sp1g40020 Schrenkiella parvula HOM05D004700 ORTHO05D005576 6.1e-43 177.9 150 66.0
vmacro11972 Vaccinium macrocarpon HOM05D004700 ORTHO05D005576 6.1e-43 177.9 149 83.2
Phvul.011G168700 Phaseolus vulgaris HOM05D004700 ORTHO05D005576 7.9e-43 177.6 149 63.1
CsaV3_4G008200 Cucumis sativus L. HOM05D004700 ORTHO05D005576 1.0e-42 177.2 154 76.6
Atru.chr2.1968 Acer truncatum HOM05D004700 ORTHO05D005576 1.4e-42 176.8 149 81.9
Duzib213G0278 Durio zibethinus HOM05D004700 ORTHO05D005576 1.8e-42 176.4 154 79.9
Atru.chr2.1937 Acer truncatum HOM05D004700 ORTHO05D005576 2.3e-42 176.0 149 81.9
CANSAT56G3173 Cannabis sativa HOM05D004700 ORTHO05D005576 3.0e-42 175.6 148 59.5
Os02g0232100 Oryza sativa ssp. japonica HOM05D004700 ORTHO05D005576 3.0e-42 175.6 151 68.9
VMungo1127G0687 Vigna mungo HOM05D004700 ORTHO05D005576 5.1e-42 174.9 149 61.7
BolC3t21472H Brassica oleracea HOM05D004700 ORTHO05D005576 1.1e-41 173.7 150 61.3
Cpa.g.sc77.62 Carica papaya HOM05D004700 ORTHO05D005576 1.1e-41 173.7 140 65.7
TPR.G16482 Trifolium pratense HOM05D004700 ORTHO05D005576 1.1e-41 173.7 151 60.9
BcaC01g01394 Brassica carinata HOM05D004700 ORTHO05D005576 2.0e-41 172.9 150 61.3
COL.COLO4_17473 Corchorus olitorius HOM05D004700 ORTHO05D005576 3.3e-41 172.2 141 64.5
MD03G1247600 Malus domestica HOM05D004700 ORTHO05D005576 3.3e-41 172.2 149 78.5
TAR624G0400 Trochodendron aralioides HOM05D004700 ORTHO05D005576 4.3e-41 171.8 149 81.2
A05p18220 Brassica napus HOM05D004700 ORTHO05D005576 7.4e-41 171.0 150 60.0
Medtr8g054400 Medicago truncatula HOM05D004700 ORTHO05D005576 7.4e-41 171.0 149 61.1
ClCG07G010130 Citrullus lanatus HOM05D004700 ORTHO05D005576 9.7e-41 170.6 166 56.6
C03p91550 Brassica napus HOM05D004700 ORTHO05D005576 1.7e-40 169.9 150 60.7
BcaB02g10917 Brassica carinata HOM05D004700 ORTHO05D005576 2.2e-40 169.5 150 76.7
DCAR_013348 Daucus carota HOM05D004700 ORTHO05D005576 2.2e-40 169.5 149 81.2
Eucgr.F03234 Eucalyptus grandis HOM05D004700 ORTHO05D005576 2.2e-40 169.5 149 81.9
Sabra16G0252900 Salix brachista HOM05D004700 ORTHO05D005576 2.2e-40 169.5 149 81.2
Migut.H02024 Erythranthe guttata HOM05D004700 ORTHO05D005576 2.8e-40 169.1 149 67.8
CSS0037390 Camellia sinensis var. sinensis HOM05D004700 ORTHO05D005576 6.3e-40 167.9 149 81.9
CSS0048020 Camellia sinensis var. sinensis HOM05D004700 ORTHO05D005576 6.3e-40 167.9 149 81.9
Peaxi162Scf00111g01325 Petunia axillaris HOM05D004700 ORTHO05D005576 1.1e-39 167.2 149 61.7
Actinidia39420 Actinidia chinensis HOM05D004700 ORTHO05D005576 1.4e-39 166.8 148 73.6
Sc03g0010710 Simmondsia chinensis HOM05D004700 ORTHO05D005576 1.4e-39 166.8 149 81.2
Zm00001eb239370 Zea mays HOM05D004700 ORTHO05D005576 1.8e-39 166.4 154 56.5
HanXRQChr15g0492381 Helianthus annuus HOM05D004700 ORTHO05D005576 3.1e-39 165.6 149 79.9
PSO675G6346 Papaver somniferum HOM05D004700 ORTHO05D005576 3.1e-39 165.6 150 78.0
Oeu050672.1 Olea europaea HOM05D004700 ORTHO05D005576 4.1e-39 165.2 149 74.5
CiPaw.12G110800 Carya illinoinensis HOM05D004700 ORTHO05D005576 9.1e-39 164.1 149 79.9
Glyma.15G209600 Glycine max HOM05D004700 ORTHO05D005576 1.2e-38 163.7 149 67.1
BcaC08g43535 Brassica carinata HOM05D004700 ORTHO05D005576 1.5e-38 163.3 150 74.0
CSS0040857 Camellia sinensis var. sinensis HOM05D004700 ORTHO05D005576 1.5e-38 163.3 149 79.9
Hma1.2p1_0325F.1_g125830 Hydrangea macrophylla HOM05D004700 ORTHO05D005576 3.4e-38 162.2 149 80.5
arahy.Tifrunner.gnm1.ann1.7PP38G Arachis hypogaea HOM05D004700 ORTHO05D005576 7.7e-38 161.0 151 76.2
EL10Ac4g08417 Beta vulgaris HOM05D004700 ORTHO05D005576 1.3e-37 160.2 149 77.9
CDE06G2539 Ceratophyllum demersum HOM05D004700 ORTHO05D005576 1.7e-37 159.8 151 77.5
Sopen08g005940 Solanum pennellii HOM05D004700 ORTHO05D005576 1.7e-37 159.8 154 76.6
Nitab4.5_0000092g0360 Nicotiana tabacum HOM05D004700 ORTHO05D005576 2.2e-37 159.5 149 61.1
ECA236G3615 Erigeron canadensis HOM05D004700 ORTHO05D005576 3.8e-37 158.7 167 54.5
C06p14980 Brassica napus HOM05D004700 ORTHO05D005576 5.0e-37 158.3 146 56.8
BolC6t36675H Brassica oleracea HOM05D004700 ORTHO05D005576 5.0e-37 158.3 146 56.8
CAN.G68.2 Capsicum annuum HOM05D004700 ORTHO05D005576 5.0e-37 158.3 149 79.2
Rhsim06G0211800 Rhododendron simsii HOM05D004700 ORTHO05D005576 8.5e-37 157.5 158 75.9
Solyc08g015770.4 Solanum lycopersicum HOM05D004700 ORTHO05D005576 1.1e-36 157.1 149 78.5
BcaC08g44093 Brassica carinata HOM05D004700 ORTHO05D005576 1.9e-36 156.4 142 58.5
MSTRG.12860 Avicennia marina HOM05D004700 ORTHO05D005576 2.5e-36 156.0 141 58.9
RhsimUnG0206700 Rhododendron simsii HOM05D004700 ORTHO05D005576 2.5e-36 156.0 173 67.6
arahy.Tifrunner.gnm1.ann1.DP9AR5 Arachis hypogaea HOM05D004700 ORTHO05D005576 7.2e-36 154.5 160 71.2
Sc07g0002390 Simmondsia chinensis HOM05D004700 ORTHO05D005576 9.4e-36 154.1 130 78.5
Glyma.09G099300 Glycine max HOM05D004700 ORTHO05D005576 1.6e-35 153.3 149 73.8
Hund08843 Selenicereus undatus HOM05D004700 ORTHO05D005576 3.6e-35 152.1 149 75.8
Lsat_1_v5_gn_7_101801 Lactuca sativa HOM05D004700 ORTHO05D005576 4.7e-35 151.8 150 58.7
BcaB07g33326 Brassica carinata HOM05D004700 ORTHO05D005576 7.9e-35 151.0 150 54.0
PGR031G0266 Punica granatum HOM05D004700 ORTHO05D005576 7.9e-35 151.0 149 75.2
AUR62019650 Chenopodium quinoa HOM05D004700 ORTHO05D005576 1.4e-34 150.2 140 77.9
DCAR_021040 Daucus carota HOM05D004700 ORTHO05D005576 1.8e-34 149.8 140 79.3
A06p00990 Brassica napus HOM05D004700 ORTHO05D005576 3.0e-34 149.1 142 68.3
BraA06t23327Z Brassica rapa HOM05D004700 ORTHO05D005576 3.0e-34 149.1 142 68.3
MBI06_g08516_MAGBIO Magnolia biondii HOM05D004700 ORTHO05D005576 5.1e-34 148.3 157 73.2
AUR62039578 Chenopodium quinoa HOM05D004700 ORTHO05D005576 6.7e-34 147.9 140 77.1
SGA_v2.0_scaffold181G39765 Striga asiatica HOM05D004700 ORTHO05D005576 6.7e-34 147.9 149 73.2
Ca_22302_v3 Cicer arietinum L. HOM05D004700 ORTHO05D005576 1.1e-33 147.1 154 52.6
Psat4g157000 Pisum sativum HOM05D004700 ORTHO05D005576 1.1e-33 147.1 151 56.3
Ah.06g187700 Amaranthus hybridus HOM05D004700 ORTHO05D005576 1.5e-33 146.7 140 77.9
MD11G1269900 Malus domestica HOM05D004700 ORTHO05D005576 1.5e-33 146.7 137 71.5
Nitab4.5_0012258g0020 Nicotiana tabacum HOM05D004700 ORTHO05D005576 4.8e-32 141.7 149 73.8
Peaxi162Scf00000g00759 Petunia axillaris HOM05D004700 ORTHO05D005576 4.8e-32 141.7 140 79.3
PGSC0003DMG400013718 Solanum tuberosum HOM05D004700 ORTHO05D005576 4.8e-32 141.7 140 77.9
Sabra11G0075300 Salix brachista HOM05D004700 ORTHO05D005576 8.2e-32 141.0 118 68.6
Nitab4.5_0000348g0050 Nicotiana tabacum HOM05D004700 ORTHO05D005576 2.4e-31 139.4 149 73.2
unitig_746.g26835 Utricularia gibba HOM05D004700 ORTHO05D005576 3.1e-31 139.0 149 52.3
Gohir.D01G038350 Gossypium hirsutum HOM05D004700 ORTHO05D005576 7.0e-31 137.9 137 72.3
Gorai.002G047100 Gossypium raimondii HOM05D004700 ORTHO05D005576 3.5e-30 135.6 151 64.9
BraA08t32208Z Brassica rapa HOM05D004700 ORTHO05D005576 5.9e-30 134.8 150 51.3
Dinv13363 Davidia involucrata HOM05D004700 ORTHO05D005576 1.1e-28 130.6 128 79.7
Oeu010032.1 Olea europaea HOM05D004700 ORTHO05D005576 1.1e-28 130.6 137 53.3
BraA08t32205Z Brassica rapa HOM05D004700 ORTHO05D005576 1.5e-28 130.2 150 50.0
C06p09250 Brassica napus HOM05D004700 ORTHO05D005576 4.7e-27 125.2 130 70.8
BolC6t36002H Brassica oleracea HOM05D004700 ORTHO05D005576 4.7e-27 125.2 130 70.8
RcHm_v2.0_Chr5g0029521 Rosa chinensis HOM05D004700 ORTHO05D005576 1.0e-26 124.0 154 63.6
Ah.04g164030 Amaranthus hybridus HOM05D004700 ORTHO05D005576 3.0e-26 122.5 140 69.3
FvH4_3g17740 Fragaria vesca HOM05D004700 ORTHO05D005576 3.0e-26 122.5 154 64.3
FAN11G3801 Fragaria x ananassa HOM05D004700 ORTHO05D005576 3.0e-26 122.5 150 62.0
BcaB04g17077 Brassica carinata HOM05D004700 ORTHO05D005576 8.8e-26 120.9 151 49.0
FAN16G2451 Fragaria x ananassa HOM05D004700 ORTHO05D005576 8.8e-26 120.9 150 61.3
BraA05t20718Z Brassica rapa HOM05D004700 ORTHO05D005576 3.3e-25 119.0 71 80.3
Dinv26707 Davidia involucrata HOM05D004700 ORTHO05D005576 5.3e-23 111.7 109 84.4
SEGI_00597 Sequoiadendron giganteum HOM05D004700 ORTHO05D005576 6.5e-21 104.8 129 45.7
FAN25G1946 Fragaria x ananassa HOM05D004700 ORTHO05D005576 3.2e-20 102.4 141 63.8
AagrBONN_evm.TU.Sc2ySwM_362.885 Anthoceros agrestis HOM05D004700 ORTHO05D005576 9.5e-12 74.3 151 53.6
CDE02G3773 Ceratophyllum demersum HOM05D004700 ORTHO05D005576 8.0e-11 71.2 55 65.5
Lsat_1_v5_gn_6_80301 Lactuca sativa HOM05D003665 ORTHO05D004387 1.4e-10 70.5 47 83.0
Lsat_1_v5_gn_8_31621 Lactuca sativa HOM05D003665 ORTHO05D004387 3.0e-10 69.3 45 84.4
Mapoly0001s0250 Marchantia polymorpha HOM05D004700 ORTHO05D005576 7.5e-09 64.7 150 48.0
Actinidia04620 Actinidia chinensis HOM05D004700 ORTHO05D005576 1.3e-08 63.9 96 42.7
Zm00001eb364990 Zea mays HOM05D001185 ORTHO05D005576 2.7e-06 56.2 86 38.4


User provided reference genes

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