Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Sabra11G0073300 Salix brachista HOM05D006454 ORTHO05D008024 6.7e-186 654.4 493 100.0
Sabra11G0078800 Salix brachista HOM05D006454 ORTHO05D008024 1.7e-176 623.2 493 97.4
Potri.001G361800 Populus trichocarpa HOM05D006454 ORTHO05D008024 1.2e-126 457.6 494 80.0
Manes.15G063200 Manihot esculenta HOM05D006454 ORTHO05D008024 2.1e-99 367.1 514 68.7
MD11G1204700 Malus domestica HOM05D006454 ORTHO05D008024 3.4e-97 359.8 485 66.6
FAN21G2064 Fragaria x ananassa HOM05D006454 ORTHO05D008024 3.8e-96 356.3 479 67.2
FvH4_3g24060 Fragaria vesca HOM05D006454 ORTHO05D008024 6.5e-96 355.5 479 68.3
FAN11G0689 Fragaria x ananassa HOM05D006454 ORTHO05D008024 6.5e-96 355.5 479 68.3
FAN25G1123 Fragaria x ananassa HOM05D006454 ORTHO05D008024 1.4e-95 354.4 493 67.7
FAN25G3289 Fragaria x ananassa HOM05D006454 ORTHO05D008024 3.2e-95 353.2 478 68.2
Haze_09788 Corylus avellana HOM05D006454 ORTHO05D008024 6.0e-94 349.0 515 63.5
QL08p005504 Quercus lobata HOM05D006454 ORTHO05D008024 6.7e-93 345.5 520 63.3
RcHm_v2.0_Chr5g0042641 Rosa chinensis HOM05D006454 ORTHO05D008024 1.5e-92 344.4 495 66.5
Cfa020229 Carpinus fangiana HOM05D006454 ORTHO05D008024 1.3e-91 341.3 520 62.3
Gorai.013G155100 Gossypium raimondii HOM05D006454 ORTHO05D008024 1.6e-91 340.9 488 67.8
Gohir.D13G138500 Gossypium hirsutum HOM05D006454 ORTHO05D008024 2.2e-91 340.5 488 67.8
Gohir.A13G134866 Gossypium hirsutum HOM05D006454 ORTHO05D008024 3.1e-90 336.7 488 67.6
Ciclev10008511m.g Citrus clementina HOM05D006454 ORTHO05D008024 5.3e-90 335.9 515 65.4
TWI39G0040 Tripterygium wilfordii HOM05D006454 ORTHO05D008024 4.5e-89 332.8 512 66.6
MD03G1188700 Malus domestica HOM05D006454 ORTHO05D008024 1.3e-88 331.3 484 69.8
Atru.chr2.3605 Acer truncatum HOM05D006454 ORTHO05D008024 6.5e-88 328.9 532 65.2
Prupe.4G234400 Prunus persica HOM05D006454 ORTHO05D008024 4.2e-87 326.2 496 63.1
CiPaw.11G201000 Carya illinoinensis HOM05D006454 ORTHO05D008024 1.0e-85 321.6 371 79.2
MELO3C024909.2 Cucumis melo HOM05D006454 ORTHO05D008024 1.4e-85 321.2 488 64.1
Thecc.07G022300 Theobroma cacao HOM05D006454 ORTHO05D008024 1.4e-85 321.2 488 62.7
CANSAT11G2145 Cannabis sativa HOM05D006454 ORTHO05D008024 1.8e-85 320.9 523 62.9
Sp6g17500 Schrenkiella parvula HOM05D006454 ORTHO05D008024 1.1e-84 318.2 507 61.9
C03p16380 Brassica napus HOM05D006454 ORTHO05D008024 1.5e-84 317.8 464 64.7
BcaC01g06383 Brassica carinata HOM05D006454 ORTHO05D008024 5.7e-84 315.8 464 64.4
BcaB01g04358 Brassica carinata HOM05D006454 ORTHO05D008024 2.2e-83 313.9 462 63.9
Glyma.14G015800 Glycine max HOM05D006454 ORTHO05D008024 2.2e-83 313.9 503 65.2
MBI16_g11566_MAGBIO Magnolia biondii HOM05D006454 ORTHO05D008024 2.2e-83 313.9 527 60.9
Aqoxy4G02215 Aquilegia oxysepala HOM05D006454 ORTHO05D008024 4.8e-83 312.8 479 65.1
A03p13940 Brassica napus HOM05D006454 ORTHO05D008024 4.8e-83 312.8 461 64.0
BraA03t10695Z Brassica rapa HOM05D006454 ORTHO05D008024 4.8e-83 312.8 461 64.0
BolC3t14060H Brassica oleracea HOM05D006454 ORTHO05D008024 6.3e-83 312.4 464 64.4
Actinidia05032 Actinidia chinensis HOM05D006454 ORTHO05D008024 8.2e-83 312.0 502 65.1
CsaV3_7G018450 Cucumis sativus L. HOM05D006454 ORTHO05D008024 8.2e-83 312.0 521 64.5
Phvul.008G275700 Phaseolus vulgaris HOM05D006454 ORTHO05D008024 8.2e-83 312.0 508 61.6
TAR626G0559 Trochodendron aralioides HOM05D006454 ORTHO05D008024 1.4e-82 311.2 497 62.8
Aa31LG3G11530 Aethionema arabicum HOM05D006454 ORTHO05D008024 5.3e-82 309.3 495 61.4
Sed0021870 Sechium edule HOM05D006454 ORTHO05D008024 1.5e-81 307.8 508 62.8
Carub.0008s1595 Capsella rubella HOM05D006454 ORTHO05D008024 4.5e-81 306.2 474 63.5
AT5G55580 Arabidopsis thaliana HOM05D006454 ORTHO05D008024 5.9e-81 305.8 463 63.3
LjContig00272g0005215 Lotus japonicus HOM05D006454 ORTHO05D008024 7.7e-81 305.4 500 62.6
ClCG09G021120 Citrullus lanatus HOM05D006454 ORTHO05D008024 1.3e-80 304.7 487 66.1
VMungo0647G1066 Vigna mungo HOM05D006454 ORTHO05D008024 2.9e-80 303.5 499 66.1
Thhalv10013311m.g Eutrema salsugineum HOM05D006454 ORTHO05D008024 3.8e-80 303.1 472 51.5
Eucgr.F03524 Eucalyptus grandis HOM05D006454 ORTHO05D008024 6.5e-80 302.4 470 67.9
THA.LOC104813444 Tarenaya hassleriana HOM05D006454 ORTHO05D008024 8.5e-80 302.0 516 62.2
AL8G31150 Arabidopsis lyrata HOM05D006454 ORTHO05D008024 2.5e-79 300.4 461 63.6
Nitab4.5_0002517g0040 Nicotiana tabacum HOM05D006454 ORTHO05D008024 1.2e-78 298.1 469 67.4
Glyma.02G297900 Glycine max HOM05D006454 ORTHO05D008024 2.1e-78 297.4 497 64.2
Lalb_Chr04g0247971 Lupinus albus HOM05D006454 ORTHO05D008024 2.1e-78 297.4 460 63.0
arahy.Tifrunner.gnm1.ann1.AYWF3K Arachis hypogaea HOM05D006454 ORTHO05D008024 6.1e-78 295.8 508 62.6
Lsat_1_v5_gn_5_8060 Lactuca sativa HOM05D006454 ORTHO05D008024 6.7e-77 292.4 493 63.5
PSO675G2716 Papaver somniferum HOM05D006454 ORTHO05D008024 8.8e-77 292.0 475 65.3
DCAR_013215 Daucus carota HOM05D006454 ORTHO05D008024 1.1e-76 291.6 444 63.5
Medtr5g094610 Medicago truncatula HOM05D006454 ORTHO05D008024 1.1e-76 291.6 513 59.3
arahy.Tifrunner.gnm1.ann1.IBL7LR Arachis hypogaea HOM05D006454 ORTHO05D008024 2.0e-76 290.8 506 62.5
ECA246G2030 Erigeron canadensis HOM05D006454 ORTHO05D008024 2.6e-76 290.4 498 56.6
HanXRQChr08g0235811 Helianthus annuus HOM05D006454 ORTHO05D008024 3.3e-76 290.0 496 56.2
TPR.G14154 Trifolium pratense HOM05D006454 ORTHO05D008024 4.4e-76 289.7 504 59.1
Cc05_g14700 Coffea canephora HOM05D006454 ORTHO05D008024 9.7e-76 288.5 464 65.1
CiPaw.12G136000 Carya illinoinensis HOM05D006454 ORTHO05D008024 1.4e-74 284.6 523 56.2
PSO541G2941 Papaver somniferum HOM05D006454 ORTHO05D008024 1.8e-74 284.3 476 65.5
SalBow8G0989 Salvia bowleyana HOM05D006454 ORTHO05D008024 5.9e-73 279.3 508 57.7
MSTRG.6985 Avicennia marina HOM05D006454 ORTHO05D008024 7.7e-73 278.9 483 63.8
Nitab4.5_0000163g0310 Nicotiana tabacum HOM05D006454 ORTHO05D008024 1.0e-72 278.5 470 60.4
Oeu054328.1 Olea europaea HOM05D006454 ORTHO05D008024 3.8e-72 276.6 516 60.7
AUR62017060 Chenopodium quinoa HOM05D006454 ORTHO05D008024 1.1e-71 275.0 442 66.5
Ca_06374_v3 Cicer arietinum L. HOM05D006454 ORTHO05D000136 7.2e-71 272.3 405 67.7
Migut.M01675 Erythranthe guttata HOM05D006454 ORTHO05D008024 2.7e-70 270.4 510 54.5
CSS0002313 Camellia sinensis var. sinensis HOM05D006454 ORTHO05D000036 4.7e-70 269.6 406 64.3
AUR62040658 Chenopodium quinoa HOM05D006454 ORTHO05D008024 4.7e-70 269.6 448 62.3
CARHR268890 Cardamine hirsuta HOM05D006454 ORTHO05D008024 6.1e-70 269.2 332 77.4
Solyc12g015640.2 Solanum lycopersicum HOM05D006454 ORTHO05D008024 6.1e-70 269.2 448 63.4
Psat2g008800 Pisum sativum HOM05D006454 ORTHO05D008024 5.7e-68 262.7 500 60.6
ATR1149G086 Amborella trichopoda HOM05D006454 ORTHO05D008024 1.3e-67 261.5 510 55.7
Ah.04g166440 Amaranthus hybridus HOM05D006454 ORTHO05D008024 1.7e-67 261.2 442 64.3
Peaxi162Scf00955g00214 Petunia axillaris HOM05D006454 ORTHO05D008024 6.3e-67 259.2 467 60.0
Sopen12g007540 Solanum pennellii HOM05D006454 ORTHO05D008024 8.2e-67 258.8 458 61.1
CAN.G1239.14 Capsicum annuum HOM05D006454 ORTHO05D008024 2.4e-66 257.3 458 60.5
GSVIVG01037780001 Vitis vinifera HOM05D006454 ORTHO05D008024 5.3e-66 256.1 444 64.2
EL10Ac4g07613 Beta vulgaris HOM05D006454 ORTHO05D008024 9.1e-66 255.4 447 63.1
CDE12G0728 Ceratophyllum demersum HOM05D006454 ORTHO05D008024 2.2e-64 250.8 494 56.5
PGR031G1939 Punica granatum HOM05D006454 ORTHO05D008024 5.0e-64 249.6 529 56.0
Lj1A885G30 Lonicera japonica HOM05D006454 ORTHO05D008024 8.5e-64 248.8 416 63.2
vmacro11560 Vaccinium macrocarpon HOM05D006454 ORTHO05D008024 1.1e-63 248.4 356 70.8
Rhsim06G0226800 Rhododendron simsii HOM05D006454 ORTHO05D008024 2.2e-59 234.2 353 64.3
SGA_v2.0_scaffold171G38887 Striga asiatica HOM05D006454 ORTHO05D008024 2.8e-59 233.8 514 58.2
Dinv40835 Davidia involucrata HOM05D006454 ORTHO05D008024 3.7e-59 233.4 292 79.8
COL.COLO4_09787 Corchorus olitorius HOM05D006454 ORTHO05D008024 1.6e-57 228.0 470 59.1
HPP92_007883 Vanilla planifolia HOM05D006454 ORTHO05D008024 1.5e-55 221.5 473 57.7
Actinidia00093 Actinidia chinensis HOM05D006454 ORTHO05D008024 9.8e-52 208.8 446 59.4
Cpa.g.sc12.193 Carica papaya HOM05D006454 ORTHO05D008024 2.5e-47 194.1 265 47.5
Oeu031063.1 Olea europaea HOM05D006454 ORTHO05D008024 4.2e-47 193.4 292 80.8
Hund01917 Selenicereus undatus HOM05D006454 ORTHO05D008024 7.2e-47 192.6 341 64.2
PGSC0003DMG401029813 Solanum tuberosum HOM05D006454 ORTHO05D008024 9.5e-47 192.2 292 76.4
Sc16g0003560 Simmondsia chinensis HOM05D006454 ORTHO05D008024 3.2e-42 177.2 345 59.4
Zm00001eb107900 Zea mays HOM05D006454 ORTHO05D008024 4.3e-39 166.8 484 55.0
CAN.G489.2 Capsicum annuum HOM05D006454 ORTHO05D008024 1.2e-38 165.2 297 52.5
HPP92_007898 Vanilla planifolia HOM05D006454 ORTHO05D008024 1.2e-38 165.2 290 76.2
Os07g0583200 Oryza sativa ssp. japonica HOM05D006454 ORTHO05D008024 2.8e-38 164.1 476 52.5
Prupe.4G234100 Prunus persica HOM05D006454 ORTHO05D008024 3.4e-36 157.1 140 81.4
Hund01916 Selenicereus undatus HOM05D006454 ORTHO05D008024 4.1e-34 150.2 461 29.1
unitig_899.g15274 Utricularia gibba HOM05D006454 ORTHO05D008024 1.1e-29 135.6 213 41.3
BcaNung06723 Brassica carinata HOM05D000081 ORTHO05D008024 1.8e-29 134.8 342 41.2
Nn1g07440 Nelumbo nucifera HOM05D006454 ORTHO05D008024 2.9e-27 127.5 92 83.7
Cpa.g.sc12.192 Carica papaya HOM05D006454 ORTHO05D008024 1.2e-25 122.1 92 81.5
BolC2t07758H Brassica oleracea HOM05D006454 ORTHO05D008024 6.6e-24 116.3 152 46.7
Pp3c7_3780 Physcomitrium patens HOM05D006454 ORTHO05D008024 1.4e-18 98.6 321 60.7
SEGI_11937 Sequoiadendron giganteum HOM05D047912 ORTHO05D008024 2.4e-18 97.8 324 56.8
BcaNung06724 Brassica carinata HOM05D006454 ORTHO05D008024 6.0e-17 93.2 54 79.6
Mapoly0042s0040 Marchantia polymorpha HOM05D006454 ORTHO05D008024 8.6e-16 89.4 375 49.6
Pp3c11_22990 Physcomitrium patens HOM05D006454 ORTHO05D008024 1.9e-15 88.2 369 51.5
vmacro10144 Vaccinium macrocarpon HOM05D006454 ORTHO05D008024 5.4e-10 70.1 315 24.8
AagrBONN_evm.TU.Sc2ySwM_117.1902 Anthoceros agrestis HOM05D006454 ORTHO05D008024 2.3e-08 64.7 97 32.0
BcaNung06726 Brassica carinata HOM05D006454 ORTHO05D008024 3.6e-06 57.4 86 41.9


User provided reference genes

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