Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Sabra11G0070100 Salix brachista HOM05D006198 ORTHO05D008226 2.3e-28 128.3 69 100.0
Potri.011G080300 Populus trichocarpa HOM05D006198 ORTHO05D008226 1.3e-18 95.9 54 98.1
Sabra11G0067800 Salix brachista HOM05D006198 ORTHO05D008226 1.3e-18 95.9 53 100.0
Cpa.g.sc166.25 Carica papaya HOM05D006198 ORTHO05D008226 3.6e-13 77.8 54 79.6
Thecc.06G152500 Theobroma cacao HOM05D006198 ORTHO05D008226 2.4e-12 75.1 57 73.7
Manes.15G120300 Manihot esculenta HOM05D006198 ORTHO05D008226 4.0e-12 74.3 55 74.5
COL.COLO4_38286 Corchorus olitorius HOM05D006198 ORTHO05D008226 5.3e-12 73.9 57 71.9
ClCG01G024530 Citrullus lanatus HOM05D006198 ORTHO05D008226 6.9e-12 73.6 57 70.2
CsaV3_6G051650 Cucumis sativus L. HOM05D006198 ORTHO05D008226 6.9e-12 73.6 57 70.2
QL05p058855 Quercus lobata HOM05D006198 ORTHO05D008226 1.2e-11 72.8 56 69.6
Gohir.A09G077700 Gossypium hirsutum HOM05D006198 ORTHO05D008226 1.5e-11 72.4 57 71.9
Gohir.D09G077900 Gossypium hirsutum HOM05D006198 ORTHO05D008226 1.5e-11 72.4 57 71.9
Gorai.006G093100 Gossypium raimondii HOM05D006198 ORTHO05D008226 1.5e-11 72.4 57 71.9
GSVIVG01021428001 Vitis vinifera HOM05D006198 ORTHO05D008226 2.0e-11 72.0 57 71.9
Cfa000959 Carpinus fangiana HOM05D006198 ORTHO05D008226 4.5e-11 70.9 58 70.7
MELO3C007142.2 Cucumis melo HOM05D006198 ORTHO05D008226 4.5e-11 70.9 57 66.7
TWI09G1426 Tripterygium wilfordii HOM05D006198 ORTHO05D008226 4.5e-11 70.9 57 68.4
TWI53G0219 Tripterygium wilfordii HOM05D006198 ORTHO05D008226 5.8e-11 70.5 57 68.4
Ciclev10016356m.g Citrus clementina HOM05D006198 ORTHO05D008226 7.6e-11 70.1 57 70.2
Sed0015649 Sechium edule HOM05D006198 ORTHO05D008226 7.6e-11 70.1 57 66.7
Atru.chr10.1293 Acer truncatum HOM05D006198 ORTHO05D008226 1.7e-10 68.9 57 68.4
Atru.chr10.1313 Acer truncatum HOM05D006198 ORTHO05D008226 1.7e-10 68.9 57 68.4
Migut.M00923 Erythranthe guttata HOM05D006198 ORTHO05D008226 1.7e-10 68.9 55 70.9
Gorai.009G156000 Gossypium raimondii HOM05D006198 ORTHO05D008226 1.7e-10 68.9 56 66.1
Nn6g32274 Nelumbo nucifera HOM05D006198 ORTHO05D008226 1.7e-10 68.9 51 72.5
Prupe.4G078700 Prunus persica HOM05D006198 ORTHO05D008226 1.7e-10 68.9 56 69.6
FvH4_3g05790 Fragaria vesca HOM05D006198 ORTHO05D008226 2.9e-10 68.2 51 70.6
FAN11G0340 Fragaria x ananassa HOM05D006198 ORTHO05D008226 2.9e-10 68.2 51 70.6
FAN16G3463 Fragaria x ananassa HOM05D006198 ORTHO05D008226 2.9e-10 68.2 51 70.6
RcHm_v2.0_Chr5g0013711 Rosa chinensis HOM05D006198 ORTHO05D008226 2.9e-10 68.2 51 70.6
Dinv30723 Davidia involucrata HOM05D006198 ORTHO05D008226 3.8e-10 67.8 53 71.7
CiPaw.09G125600 Carya illinoinensis HOM05D006198 ORTHO05D008226 4.9e-10 67.4 58 67.2
Duzib160G0456 Durio zibethinus HOM05D006198 ORTHO05D008226 4.9e-10 67.4 57 66.7
SalBow8G2100 Salvia bowleyana HOM05D006198 ORTHO05D008226 4.9e-10 67.4 53 77.4
MBI10_g21114_MAGBIO Magnolia biondii HOM05D006198 ORTHO05D008226 6.4e-10 67.0 47 80.9
MD10G1263800 Malus domestica HOM05D006198 ORTHO05D008226 6.4e-10 67.0 58 67.2
MSTRG.16229 Avicennia marina HOM05D006198 ORTHO05D008226 1.1e-09 66.2 52 75.0
Hund21523 Selenicereus undatus HOM05D006198 ORTHO05D008226 1.1e-09 66.2 55 67.3
Sc24g0001850 Simmondsia chinensis HOM05D006198 ORTHO05D008226 1.1e-09 66.2 52 67.3
Gohir.D05G152000 Gossypium hirsutum HOM05D006198 ORTHO05D008226 1.4e-09 65.9 56 64.3
Nn3g20699 Nelumbo nucifera HOM05D006198 ORTHO05D008226 1.4e-09 65.9 51 70.6
Lalb_Chr12g0208941 Lupinus albus HOM05D006198 ORTHO05D008226 1.9e-09 65.5 51 70.6
Haze_05575 Corylus avellana HOM05D006198 ORTHO05D008226 2.4e-09 65.1 46 78.3
Peaxi162Scf00796g00114 Petunia axillaris HOM05D006198 ORTHO05D008226 2.4e-09 65.1 57 68.4
HanXRQChr01g0020411 Helianthus annuus HOM05D006198 ORTHO05D008226 3.2e-09 64.7 51 68.6
vmacro15943 Vaccinium macrocarpon HOM05D006198 ORTHO05D008226 3.2e-09 64.7 57 66.7
Eucgr.E02394 Eucalyptus grandis HOM05D006198 ORTHO05D008226 4.2e-09 64.3 55 63.6
SGA_v2.0_scaffold333G48994 Striga asiatica HOM05D006198 ORTHO05D008226 4.2e-09 64.3 53 71.7
VMungo1309G2860 Vigna mungo HOM05D006198 ORTHO05D008226 4.2e-09 64.3 48 72.9
Phvul.009G219000 Phaseolus vulgaris HOM05D006198 ORTHO05D008226 5.4e-09 63.9 48 72.9
Atru.chr10.1297 Acer truncatum HOM05D006198 ORTHO05D008226 7.1e-09 63.5 57 64.9
Lsat_1_v5_gn_1_96760 Lactuca sativa HOM05D006198 ORTHO05D008226 7.1e-09 63.5 57 61.4
Lj4g0025062 Lotus japonicus HOM05D006198 ORTHO05D003063 7.1e-09 63.5 48 72.9
HanXRQChr14g0435081 Helianthus annuus HOM05D006198 ORTHO05D008226 9.3e-09 63.2 51 66.7
Psat7g090320 Pisum sativum HOM05D006198 ORTHO05D008226 9.3e-09 63.2 48 72.9
AUR62027530 Chenopodium quinoa HOM05D006198 ORTHO05D008226 1.2e-08 62.8 57 61.4
Medtr4g096750 Medicago truncatula HOM05D006198 ORTHO05D008226 1.2e-08 62.8 53 66.0
Nitab4.5_0001655g0050 Nicotiana tabacum HOM05D006198 ORTHO05D008226 1.2e-08 62.8 57 66.7
Glyma.09G082200 Glycine max HOM05D006198 ORTHO05D008226 1.6e-08 62.4 48 70.8
Glyma.15G190700 Glycine max HOM05D006198 ORTHO05D008226 1.6e-08 62.4 48 70.8
Ca_18268_v3 Cicer arietinum L. HOM05D006198 ORTHO05D008226 2.1e-08 62.0 47 72.3
PGR083G0877 Punica granatum HOM05D006198 ORTHO05D008226 2.1e-08 62.0 55 60.0
PSO170G0869 Papaver somniferum HOM05D006198 ORTHO05D008226 2.7e-08 61.6 49 67.3
MD05G1286000 Malus domestica HOM05D006198 ORTHO05D008226 3.5e-08 61.2 53 67.9
Hma1.2p1_0259F.1_g104290 Hydrangea macrophylla HOM05D006198 ORTHO05D008226 4.6e-08 60.8 46 73.9
TAR629G2249 Trochodendron aralioides HOM05D006198 ORTHO05D008226 4.6e-08 60.8 57 57.9
Aqoxy4G00108 Aquilegia oxysepala HOM05D006198 ORTHO05D008226 6.0e-08 60.5 51 66.7
CAN.G650.24 Capsicum annuum HOM05D006198 ORTHO05D008226 6.0e-08 60.5 57 63.2
Sopen02g019760 Solanum pennellii HOM05D006198 ORTHO05D008226 6.0e-08 60.5 57 63.2
AUR62030229 Chenopodium quinoa HOM05D006198 ORTHO05D008226 7.9e-08 60.1 52 61.5
CDE02G2137 Ceratophyllum demersum HOM05D006198 ORTHO05D008226 1.0e-07 59.7 53 60.4
Cc09_g09250 Coffea canephora HOM05D006198 ORTHO05D008226 1.0e-07 59.7 55 58.2
Actinidia39563 Actinidia chinensis HOM05D006198 ORTHO05D008226 1.3e-07 59.3 57 61.4
ATR0585G073 Amborella trichopoda HOM05D006198 ORTHO05D008226 1.3e-07 59.3 50 66.0
arahy.Tifrunner.gnm1.ann1.8B838V Arachis hypogaea HOM05D006198 ORTHO05D008226 1.3e-07 59.3 47 70.2
arahy.Tifrunner.gnm1.ann1.ET305C Arachis hypogaea HOM05D006198 ORTHO05D008226 1.3e-07 59.3 47 70.2
DCAR_025303 Daucus carota HOM05D006198 ORTHO05D008226 1.3e-07 59.3 50 64.0
Nitab4.5_0005219g0070 Nicotiana tabacum HOM05D006198 ORTHO05D008226 1.8e-07 58.9 57 63.2
PGSC0003DMG401008288 Solanum tuberosum HOM05D006198 ORTHO05D008226 2.3e-07 58.5 57 59.6
TAR629G0041 Trochodendron aralioides HOM05D006198 ORTHO05D008226 2.3e-07 58.5 49 65.3
CANSAT35G1481 Cannabis sativa HOM05D006198 ORTHO05D008226 5.1e-07 57.4 52 63.5
CARHR225050 Cardamine hirsuta HOM05D006198 ORTHO05D008226 6.7e-07 57.0 65 55.4
Lj2A307G26 Lonicera japonica HOM05D006198 ORTHO05D008226 8.7e-07 56.6 57 56.1
ECA248G2800 Erigeron canadensis HOM05D006198 ORTHO05D008226 1.5e-06 55.8 51 58.8
HPP92_023266 Vanilla planifolia HOM05D006198 ORTHO05D008226 1.5e-06 55.8 56 55.4
HPP92_023299 Vanilla planifolia HOM05D006198 ORTHO05D008226 1.5e-06 55.8 56 55.4
Oeu030914.3 Olea europaea HOM05D006198 ORTHO05D008226 1.9e-06 55.5 57 57.9
Os01g0666500 Oryza sativa ssp. japonica HOM05D006198 ORTHO05D008226 9.6e-06 53.1 53 54.7


User provided reference genes

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