Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Sabra11G0068900 Salix brachista HOM05D005618 ORTHO05D007278 3.8e-120 434.9 222 100.0
Sabra11G0067000 Salix brachista HOM05D005618 ORTHO05D007278 1.2e-118 429.9 222 99.1
Potri.011G085100 Populus trichocarpa HOM05D005618 ORTHO05D007278 3.0e-109 398.7 222 91.0
COL.COLO4_31069 Corchorus olitorius HOM05D005618 ORTHO05D007278 6.3e-91 337.8 222 77.5
Duzib192G0044 Durio zibethinus HOM05D005618 ORTHO05D007278 1.2e-89 333.6 223 76.2
Duzib235G0110 Durio zibethinus HOM05D005618 ORTHO05D007278 1.5e-89 333.2 225 75.6
Gohir.A10G041000 Gossypium hirsutum HOM05D005618 ORTHO05D007278 1.7e-88 329.7 223 74.9
QL05p057939 Quercus lobata HOM05D005618 ORTHO05D007278 3.8e-88 328.6 221 74.7
Thecc.06G150300 Theobroma cacao HOM05D005618 ORTHO05D007278 3.8e-88 328.6 225 74.2
Manes.15G121800 Manihot esculenta HOM05D005618 ORTHO05D007278 6.5e-88 327.8 222 73.0
MSTRG.7487 Avicennia marina HOM05D005618 ORTHO05D007278 8.5e-88 327.4 224 73.7
CiPaw.09G123100 Carya illinoinensis HOM05D005618 ORTHO05D007278 5.5e-87 324.7 220 74.5
Gohir.D10G041800 Gossypium hirsutum HOM05D005618 ORTHO05D007278 5.5e-87 324.7 223 74.0
HanXRQChr15g0480861 Helianthus annuus HOM05D005618 ORTHO05D007278 7.2e-87 324.3 223 73.5
FAN25G1374 Fragaria x ananassa HOM05D005618 ORTHO05D007278 9.4e-87 323.9 221 72.9
Manes.17G070300 Manihot esculenta HOM05D005618 ORTHO05D007278 1.6e-86 323.2 222 73.0
FAN11G3487 Fragaria x ananassa HOM05D005618 ORTHO05D007278 2.7e-86 322.4 220 72.7
FvH4_3g05510 Fragaria vesca HOM05D005618 ORTHO05D007278 3.6e-86 322.0 220 72.3
CiPaw.10G091700 Carya illinoinensis HOM05D005618 ORTHO05D007278 6.1e-86 321.2 220 73.6
Phvul.002G096900 Phaseolus vulgaris HOM05D005618 ORTHO05D007278 6.1e-86 321.2 222 72.1
FAN16G1298 Fragaria x ananassa HOM05D005618 ORTHO05D007278 7.9e-86 320.9 220 72.3
Lalb_Chr05g0219641 Lupinus albus HOM05D005618 ORTHO05D007278 7.9e-86 320.9 222 70.3
RcHm_v2.0_Chr5g0014231 Rosa chinensis HOM05D005618 ORTHO05D007278 7.9e-86 320.9 221 71.0
Lalb_Chr09g0328651 Lupinus albus HOM05D005618 ORTHO05D007278 1.0e-85 320.5 217 73.3
Dinv32254 Davidia involucrata HOM05D005618 ORTHO05D007278 1.4e-85 320.1 220 74.5
CANSAT35G0334 Cannabis sativa HOM05D005618 ORTHO05D007278 3.9e-85 318.5 223 69.5
Gorai.011G044400 Gossypium raimondii HOM05D005618 ORTHO05D007278 3.9e-85 318.5 226 73.0
Cfa000939 Carpinus fangiana HOM05D005618 ORTHO05D007278 6.7e-85 317.8 251 67.3
FAN21G3768 Fragaria x ananassa HOM05D005618 ORTHO05D007278 8.8e-85 317.4 220 71.8
Nn4g26571 Nelumbo nucifera HOM05D005618 ORTHO05D007278 8.8e-85 317.4 220 72.7
Glyma.07G220200 Glycine max HOM05D005618 ORTHO05D007278 1.1e-84 317.0 222 69.8
TWI53G0952 Tripterygium wilfordii HOM05D005618 ORTHO05D007278 1.1e-84 317.0 222 72.5
CDE02G0590 Ceratophyllum demersum HOM05D005618 ORTHO05D007278 1.5e-84 316.6 222 70.3
MSTRG.16244 Avicennia marina HOM05D005618 ORTHO05D007278 2.0e-84 316.2 226 69.9
Cc00_g08440 Coffea canephora HOM05D005618 ORTHO05D007278 2.0e-84 316.2 222 73.0
Hma1.2p1_0053F.1_g030930 Hydrangea macrophylla HOM05D005618 ORTHO05D007278 2.6e-84 315.8 223 74.0
Glyma.20G018500 Glycine max HOM05D005618 ORTHO05D007278 4.4e-84 315.1 222 70.3
GSVIVG01021471001 Vitis vinifera HOM05D005618 ORTHO05D007278 7.4e-84 314.3 224 74.1
arahy.Tifrunner.gnm1.ann1.R3FQ90 Arachis hypogaea HOM05D005618 ORTHO05D007278 9.7e-84 313.9 222 68.9
Gohir.A05G148300 Gossypium hirsutum HOM05D005618 ORTHO05D007278 9.7e-84 313.9 226 72.1
arahy.Tifrunner.gnm1.ann1.LME4NB Arachis hypogaea HOM05D005618 ORTHO05D007278 1.3e-83 313.5 222 68.9
TAR626G0061 Trochodendron aralioides HOM05D005618 ORTHO05D007278 1.3e-83 313.5 222 73.0
Oeu034148.1 Olea europaea HOM05D005618 ORTHO05D007278 1.7e-83 313.2 225 69.8
CDE06G1306 Ceratophyllum demersum HOM05D005618 ORTHO05D007278 2.2e-83 312.8 222 69.4
Migut.M00907 Erythranthe guttata HOM05D005618 ORTHO05D007278 2.2e-83 312.8 221 71.0
SGA_v2.0_scaffold1G00178 Striga asiatica HOM05D005618 ORTHO05D007278 2.2e-83 312.8 217 73.7
SalBow8G3565 Salvia bowleyana HOM05D005618 ORTHO05D007278 1.1e-82 310.5 228 68.9
TAR624G0623 Trochodendron aralioides HOM05D005618 ORTHO05D007278 2.4e-82 309.3 222 70.3
Lsat_1_v5_gn_7_28281 Lactuca sativa HOM05D005618 ORTHO05D007278 3.1e-82 308.9 220 70.9
PGR083G1302 Punica granatum HOM05D005618 ORTHO05D007278 4.1e-82 308.5 222 68.5
VMungo0251G3758 Vigna mungo HOM05D005618 ORTHO05D007278 4.1e-82 308.5 222 69.4
Haze_05608 Corylus avellana HOM05D005618 ORTHO05D007278 1.2e-81 307.0 209 74.6
Eucgr.D00295 Eucalyptus grandis HOM05D005618 ORTHO05D007278 1.6e-81 306.6 222 71.6
Oeu052366.1 Olea europaea HOM05D005618 ORTHO05D007278 1.6e-81 306.6 236 66.9
Gorai.009G154900 Gossypium raimondii HOM05D005618 ORTHO05D007278 2.6e-81 305.8 226 70.8
Psat7g130040 Pisum sativum HOM05D005618 ORTHO05D007278 2.6e-81 305.8 217 69.6
Gohir.D05G150800 Gossypium hirsutum HOM05D005618 ORTHO05D007278 3.5e-81 305.4 229 69.0
AL1G43960 Arabidopsis lyrata HOM05D005618 ORTHO05D007278 7.7e-81 304.3 221 66.5
Sc17g0004900 Simmondsia chinensis HOM05D005618 ORTHO05D007278 7.7e-81 304.3 222 67.1
Lj4g0005080 Lotus japonicus HOM05D005618 ORTHO05D007278 1.0e-80 303.9 222 69.4
Nitab4.5_0006887g0020 Nicotiana tabacum HOM05D005618 ORTHO05D007278 1.3e-80 303.5 219 68.9
TPR.G38285 Trifolium pratense HOM05D005618 ORTHO05D007278 1.3e-80 303.5 222 69.4
AT1G30070 Arabidopsis thaliana HOM05D005618 ORTHO05D007278 1.7e-80 303.1 221 66.1
Ca_18751_v3 Cicer arietinum L. HOM05D005618 ORTHO05D007278 1.7e-80 303.1 222 68.0
CAN.G50.16 Capsicum annuum HOM05D005618 ORTHO05D007278 2.9e-80 302.4 218 69.7
PGSC0003DMG400012093 Solanum tuberosum HOM05D005618 ORTHO05D007278 2.9e-80 302.4 219 68.5
Ciclev10016692m.g Citrus clementina HOM05D005618 ORTHO05D007278 5.0e-80 301.6 220 70.0
THA.LOC104814300 Tarenaya hassleriana HOM05D005618 ORTHO05D007278 6.5e-80 301.2 219 66.7
BcaB07g32606 Brassica carinata HOM05D005618 ORTHO05D007278 1.9e-79 299.7 221 65.6
SGA_v2.0_scaffold333G48991 Striga asiatica HOM05D005618 ORTHO05D007278 1.9e-79 299.7 221 70.1
Sopen08g007080 Solanum pennellii HOM05D005618 ORTHO05D007278 2.5e-79 299.3 219 68.0
Hund21546 Selenicereus undatus HOM05D005618 ORTHO05D007278 3.2e-79 298.9 220 66.8
Thhalv10008455m.g Eutrema salsugineum HOM05D005618 ORTHO05D007278 5.5e-79 298.1 221 65.6
Solyc08g016670.3 Solanum lycopersicum HOM05D005618 ORTHO05D007278 5.5e-79 298.1 219 67.1
Sed0020286 Sechium edule HOM05D005618 ORTHO05D007278 7.2e-79 297.7 223 67.7
Aa31LG6G5600 Aethionema arabicum HOM05D005618 ORTHO05D007278 9.4e-79 297.4 231 63.6
MELO3C002736.2 Cucumis melo HOM05D005618 ORTHO05D007278 9.4e-79 297.4 220 66.8
BcaC05g27023 Brassica carinata HOM05D005618 ORTHO05D007278 1.2e-78 297.0 224 64.7
Carub.0001s2829 Capsella rubella HOM05D005618 ORTHO05D007278 2.1e-78 296.2 219 66.7
A09p36460 Brassica napus HOM05D005618 ORTHO05D007278 2.7e-78 295.8 221 65.6
BraA09t39168Z Brassica rapa HOM05D005618 ORTHO05D007278 2.7e-78 295.8 221 65.6
Lj2A305G54 Lonicera japonica HOM05D005618 ORTHO05D007278 2.7e-78 295.8 220 67.3
Sp1g25930 Schrenkiella parvula HOM05D005618 ORTHO05D007278 2.7e-78 295.8 221 65.2
THA.LOC104820649 Tarenaya hassleriana HOM05D005618 ORTHO05D007278 3.6e-78 295.4 219 67.6
C05p28860 Brassica napus HOM05D005618 ORTHO05D007278 4.7e-78 295.0 223 64.6
BolC5t31605H Brassica oleracea HOM05D005618 ORTHO05D007278 4.7e-78 295.0 223 64.6
ClCG03G006840 Citrullus lanatus HOM05D005618 ORTHO05D007278 4.7e-78 295.0 225 66.2
ECA236G2996 Erigeron canadensis HOM05D005618 ORTHO05D007278 1.8e-77 293.1 227 65.6
SEGI_02039 Sequoiadendron giganteum HOM05D005618 ORTHO05D007278 3.0e-77 292.4 221 67.0
DCAR_003916 Daucus carota HOM05D005618 ORTHO05D007278 4.0e-77 292.0 221 65.2
PSO675G5881 Papaver somniferum HOM05D005618 ORTHO05D007278 1.1e-76 290.4 250 62.4
vmacro10962 Vaccinium macrocarpon HOM05D005618 ORTHO05D007278 1.5e-76 290.0 260 63.1
CsaV3_1G032420 Cucumis sativus L. HOM05D005618 ORTHO05D007278 3.3e-76 288.9 221 64.3
CARHR029340 Cardamine hirsuta HOM05D005618 ORTHO05D007278 7.5e-76 287.7 219 62.1
Peaxi162Scf01211g00117 Petunia axillaris HOM05D005618 ORTHO05D007278 1.1e-74 283.9 265 57.0
HPP92_020290 Vanilla planifolia HOM05D005618 ORTHO05D007278 1.4e-74 283.5 225 64.4
AUR62030187 Chenopodium quinoa HOM05D005618 ORTHO05D007278 3.1e-74 282.3 222 64.4
AUR62002738 Chenopodium quinoa HOM05D005618 ORTHO05D007278 4.1e-74 282.0 223 65.0
ATR0730G012 Amborella trichopoda HOM05D005618 ORTHO05D007278 2.2e-72 276.2 220 61.8
Aqoxy1G01706 Aquilegia oxysepala HOM05D005618 ORTHO05D007278 3.8e-72 275.4 225 64.4
CSS0012983 Camellia sinensis var. sinensis HOM05D005618 ORTHO05D007278 5.0e-72 275.0 161 80.7
MBI10_g30420_MAGBIO Magnolia biondii HOM05D005618 ORTHO05D007278 8.5e-72 274.2 183 72.1
Zm00001eb370650 Zea mays HOM05D005618 ORTHO05D007278 1.2e-70 270.4 223 59.2
Os01g0757500 Oryza sativa ssp. japonica HOM05D005618 ORTHO05D007278 1.6e-70 270.0 222 59.0
Actinidia39574 Actinidia chinensis HOM05D005618 ORTHO05D007278 6.1e-70 268.1 161 80.1
MD05G1283600 Malus domestica HOM05D005618 ORTHO05D007278 6.1e-70 268.1 212 66.0
Zm00001eb152680 Zea mays HOM05D005618 ORTHO05D007278 1.4e-69 266.9 220 60.5
Ah.09g232560 Amaranthus hybridus HOM05D005618 ORTHO05D007278 5.2e-69 265.0 256 56.6
Nitab4.5_0000420g0030 Nicotiana tabacum HOM05D005618 ORTHO05D007278 8.8e-69 264.2 217 63.1
Atru.chr10.1223 Acer truncatum HOM05D005618 ORTHO05D007278 1.5e-68 263.5 219 60.3
Nn3g20783 Nelumbo nucifera HOM05D005618 ORTHO05D007278 2.6e-68 262.7 188 70.2
Medtr4g084250 Medicago truncatula HOM05D005618 ORTHO05D007278 4.4e-68 261.9 222 60.8
MD10G1261800 Malus domestica HOM05D005618 ORTHO05D007278 2.9e-64 249.2 212 62.3
Rhsim02G0158200 Rhododendron simsii HOM05D005618 ORTHO05D007278 2.6e-60 236.1 191 67.0
Mapoly0148s0015 Marchantia polymorpha HOM05D005618 ORTHO05D007278 1.3e-59 233.8 238 51.3
AUR62026670 Chenopodium quinoa HOM05D005618 ORTHO05D007278 2.2e-59 233.0 198 61.6
Pp3c4_13920 Physcomitrium patens HOM05D005618 ORTHO05D007278 5.9e-57 224.9 217 52.5
Thhalv10002717m.g Eutrema salsugineum HOM05D005618 ORTHO05D007278 5.6e-55 218.4 132 72.7
Cpa.g.c46789 Carica papaya HOM05D005618 ORTHO05D007278 5.2e-53 211.8 123 78.9
unitig_32.g11444 Utricularia gibba HOM05D005618 ORTHO05D007278 8.9e-53 211.1 115 85.2
Actinidia07695 Actinidia chinensis HOM05D005618 ORTHO05D007278 2.0e-52 209.9 225 56.9
SMO364G0114 Selaginella moellendorffii HOM05D005618 ORTHO05D007278 2.2e-51 206.5 211 51.2
AagrBONN_evm.TU.Sc2ySwM_344.1819 Anthoceros agrestis HOM05D005618 ORTHO05D007278 1.1e-50 204.1 246 47.2
Prupe.4G081000 Prunus persica HOM05D005618 ORTHO05D007278 1.4e-45 187.2 237 45.6
CBR_g22260 Chara braunii HOM05D005618 ORTHO05D007278 1.2e-38 164.1 251 39.8
MBI16_g34289_MAGBIO Magnolia biondii HOM05D005618 ORTHO05D007278 6.2e-38 161.8 100 75.0
AUR62040575 Chenopodium quinoa HOM05D005618 ORTHO05D007278 1.1e-37 161.0 175 52.0
SHI24907 Sapria himalayana HOM05D005618 ORTHO05D007278 1.3e-32 144.1 182 46.2
PSO541G3455 Papaver somniferum HOM05D005618 ORTHO05D007278 2.4e-26 123.2 251 36.3
MBI18_g05573_MAGBIO Magnolia biondii HOM05D005618 ORTHO05D007278 2.4e-13 80.1 43 83.7
SHI24908 Sapria himalayana HOM05D005618 ORTHO05D007278 1.1e-10 71.2 88 51.1
SMO353G0169 Selaginella moellendorffii HOM05D005618 ORTHO05D001361 2.4e-10 70.1 38 81.6
SMO364G0864 Selaginella moellendorffii HOM05D005618 ORTHO05D374196 5.4e-10 68.9 209 29.7
Aqoxy7G01552 Aquilegia oxysepala HOM05D005618 ORTHO05D007278 1.2e-09 67.8 38 78.9
MBI18_g05572_MAGBIO Magnolia biondii HOM05D004967 ORTHO05D006146 1.0e-08 64.7 40 70.0
AT1G30060 Arabidopsis thaliana HOM05D008497 ORTHO05D003355 2.8e-06 56.6 28 89.3
Cpa.g.sc246.8 Carica papaya HOM05D005618 ORTHO05D118306 4.8e-06 55.8 46 63.0


User provided reference genes

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