Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Sabra11G0066400 Salix brachista HOM05D004641 ORTHO05D005871 4.9e-157 557.8 284 100.0
Potri.011G083700 Populus trichocarpa HOM05D004641 ORTHO05D005871 7.7e-142 507.3 287 91.6
Cpa.g.sc128.14 Carica papaya HOM05D004641 ORTHO05D005871 1.0e-114 417.2 285 74.7
COL.COLO4_22996 Corchorus olitorius HOM05D004641 ORTHO05D005871 2.3e-114 416.0 288 75.7
Gohir.A13G074000 Gossypium hirsutum HOM05D004641 ORTHO05D005871 2.0e-113 412.9 286 74.5
Duzib268G0036 Durio zibethinus HOM05D004641 ORTHO05D005871 3.4e-113 412.1 288 74.0
Gorai.013G084700 Gossypium raimondii HOM05D004641 ORTHO05D005871 3.4e-113 412.1 286 74.1
TWI12G0809 Tripterygium wilfordii HOM05D004641 ORTHO05D005871 5.7e-113 411.4 285 73.3
GSVIVG01020002001 Vitis vinifera HOM05D004641 ORTHO05D005871 5.7e-113 411.4 288 72.2
Prupe.1G273100 Prunus persica HOM05D004641 ORTHO05D005871 2.2e-112 409.5 287 71.1
PGR102G3009 Punica granatum HOM05D004641 ORTHO05D005871 6.3e-112 407.9 285 73.0
Gohir.D13G074100 Gossypium hirsutum HOM05D004641 ORTHO05D005871 1.1e-111 407.1 286 73.4
CANSAT64G1560 Cannabis sativa HOM05D004641 ORTHO05D005871 3.1e-111 405.6 291 72.9
CiPaw.05G136500 Carya illinoinensis HOM05D004641 ORTHO05D005871 1.0e-109 400.6 287 71.8
Glyma.02G106600 Glycine max HOM05D004641 ORTHO05D005871 2.9e-109 399.1 287 71.4
CSS0000565 Camellia sinensis var. sinensis HOM05D004641 ORTHO05D005871 3.8e-109 398.7 284 71.5
CSS0029182 Camellia sinensis var. sinensis HOM05D004641 ORTHO05D005871 6.5e-109 397.9 284 71.1
RcHm_v2.0_Chr4g0439951 Rosa chinensis HOM05D004641 ORTHO05D005871 8.5e-109 397.5 282 71.6
Ciclev10032310m.g Citrus clementina HOM05D004641 ORTHO05D005871 1.9e-108 396.4 287 70.7
QL03p064370 Quercus lobata HOM05D004641 ORTHO05D005871 4.2e-108 395.2 287 72.1
VMungo1215G3365 Vigna mungo HOM05D004641 ORTHO05D005871 9.4e-108 394.0 287 69.0
Lj3A1038G72 Lonicera japonica HOM05D004641 ORTHO05D005871 1.2e-107 393.7 287 70.4
Phvul.002G086150 Phaseolus vulgaris HOM05D004641 ORTHO05D005871 1.6e-107 393.3 287 69.3
Nitab4.5_0000703g0120 Nicotiana tabacum HOM05D004641 ORTHO05D005871 4.7e-107 391.7 280 73.2
Actinidia04038 Actinidia chinensis HOM05D004641 ORTHO05D005871 6.1e-107 391.3 289 69.2
FvH4_4g31460 Fragaria vesca HOM05D004641 ORTHO05D005871 6.1e-107 391.3 286 69.2
FAN22G2174 Fragaria x ananassa HOM05D004641 ORTHO05D005871 1.8e-106 389.8 286 68.9
Peaxi162Scf00541g00527 Petunia axillaris HOM05D004641 ORTHO05D005871 1.8e-106 389.8 280 73.2
Psat2g121160 Pisum sativum HOM05D004641 ORTHO05D005871 8.8e-106 387.5 287 68.6
TAR629G2466 Trochodendron aralioides HOM05D004641 ORTHO05D005871 8.8e-106 387.5 287 71.8
Medtr7g039370 Medicago truncatula HOM05D004641 ORTHO05D005871 2.0e-105 386.3 287 67.9
Medtr5g040250 Medicago truncatula HOM05D004641 ORTHO05D005871 2.6e-105 386.0 287 67.9
Ca_24263_v3 Cicer arietinum L. HOM05D004641 ORTHO05D005871 9.8e-105 384.0 287 68.3
Lalb_Chr10g0098211 Lupinus albus HOM05D004641 ORTHO05D005871 9.8e-105 384.0 287 69.0
Glyma.01G046400 Glycine max HOM05D004641 ORTHO05D005871 1.3e-104 383.6 287 69.0
Solyc05g007450.3 Solanum lycopersicum HOM05D004641 ORTHO05D005871 1.3e-104 383.6 280 72.5
PGSC0003DMG400003384 Solanum tuberosum HOM05D004641 ORTHO05D005871 2.2e-104 382.9 280 72.1
Sopen05g003330 Solanum pennellii HOM05D004641 ORTHO05D005871 2.8e-104 382.5 280 72.9
Eucgr.B03435 Eucalyptus grandis HOM05D004641 ORTHO05D005871 4.9e-104 381.7 285 68.8
TAR622G0412 Trochodendron aralioides HOM05D004641 ORTHO05D005871 1.1e-103 380.6 293 69.6
MD13G1073100 Malus domestica HOM05D004641 ORTHO05D005871 1.4e-103 380.2 259 73.4
THA.LOC104822117 Tarenaya hassleriana HOM05D004641 ORTHO05D005871 1.8e-103 379.8 285 66.3
MSTRG.7808 Avicennia marina HOM05D004641 ORTHO05D005871 2.4e-103 379.4 282 68.4
Nn3g17219 Nelumbo nucifera HOM05D004641 ORTHO05D005871 4.1e-103 378.6 292 68.5
Lj2g0007835 Lotus japonicus HOM05D004641 ORTHO05D005871 1.2e-102 377.1 287 68.3
Oeu001572.1 Olea europaea HOM05D004641 ORTHO05D005871 1.6e-102 376.7 280 66.8
FAN17G1817 Fragaria x ananassa HOM05D004641 ORTHO05D005871 2.7e-102 375.9 296 66.2
Cc11_g13100 Coffea canephora HOM05D004641 ORTHO05D005871 1.7e-101 373.2 280 67.5
Migut.L01304 Erythranthe guttata HOM05D004641 ORTHO05D005871 2.9e-101 372.5 280 67.5
SalBow2G2171 Salvia bowleyana HOM05D004641 ORTHO05D005871 5.0e-101 371.7 284 66.2
HanXRQChr12g0362561 Helianthus annuus HOM05D004641 ORTHO05D005871 1.9e-100 369.8 279 68.1
CAN.G58.35 Capsicum annuum HOM05D004641 ORTHO05D005871 4.3e-100 368.6 280 70.0
FAN12G2116 Fragaria x ananassa HOM05D001668 ORTHO05D005871 2.1e-99 366.3 271 68.3
FAN07G1510 Fragaria x ananassa HOM05D004641 ORTHO05D005871 4.7e-99 365.2 271 68.3
MBI05_g35443_MAGBIO Magnolia biondii HOM05D004641 ORTHO05D005871 4.7e-99 365.2 292 65.8
Manes.01G186500 Manihot esculenta HOM05D004641 ORTHO05D005871 4.7e-99 365.2 229 81.2
PSO478G0089 Papaver somniferum HOM05D004641 ORTHO05D005871 3.0e-98 362.5 285 64.9
DCAR_007149 Daucus carota HOM05D004641 ORTHO05D005871 5.2e-98 361.7 282 67.4
BcaC05g26381 Brassica carinata HOM05D004641 ORTHO05D005871 6.8e-98 361.3 285 66.3
C05p24110 Brassica napus HOM05D004641 ORTHO05D005871 6.8e-98 361.3 285 66.3
BolC5t31146H Brassica oleracea HOM05D004641 ORTHO05D005871 6.8e-98 361.3 285 66.3
Aa31LG7G8260 Aethionema arabicum HOM05D004641 ORTHO05D005871 8.9e-98 360.9 285 65.6
ECA233G1872 Erigeron canadensis HOM05D004641 ORTHO05D005871 8.9e-98 360.9 279 65.9
Aqoxy3G03361 Aquilegia oxysepala HOM05D004641 ORTHO05D005871 2.6e-97 359.4 291 66.0
arahy.Tifrunner.gnm1.ann1.K7EFN7 Arachis hypogaea HOM05D004641 ORTHO05D005871 3.4e-97 359.0 291 65.6
BraA09t39524Z Brassica rapa HOM05D004641 ORTHO05D005871 4.4e-97 358.6 278 66.5
CiPaw.06G083900 Carya illinoinensis HOM05D004641 ORTHO05D005871 4.4e-97 358.6 244 75.8
HanXRQChr08g0210501 Helianthus annuus HOM05D004641 ORTHO05D005871 5.7e-97 358.2 279 66.7
Sc11g0001860 Simmondsia chinensis HOM05D004641 ORTHO05D005871 5.7e-97 358.2 286 65.4
PSO017G4882 Papaver somniferum HOM05D004641 ORTHO05D005871 9.8e-97 357.5 285 64.6
AT1G26840 Arabidopsis thaliana HOM05D004641 ORTHO05D005871 2.9e-96 355.9 287 64.5
A09p40260 Brassica napus HOM05D004641 ORTHO05D005871 3.7e-96 355.5 278 66.2
Thecc.02G351000 Theobroma cacao HOM05D004641 ORTHO05D005871 4.9e-96 355.1 230 79.1
Atru.chr11.1801 Acer truncatum HOM05D004641 ORTHO05D005871 8.3e-96 354.4 216 82.4
ClCG11G009310 Citrullus lanatus HOM05D004641 ORTHO05D005871 8.3e-96 354.4 280 66.4
Aqoxy5G03781 Aquilegia oxysepala HOM05D004641 ORTHO05D005871 1.4e-95 353.6 291 65.3
AL1G38720 Arabidopsis lyrata HOM05D004641 ORTHO05D005871 1.4e-95 353.6 281 65.1
Zm00001eb328260 Zea mays HOM05D004641 ORTHO05D005871 1.4e-95 353.6 287 65.2
Hund25250 Selenicereus undatus HOM05D004641 ORTHO05D005871 2.4e-95 352.8 286 64.7
vmacro04307 Vaccinium macrocarpon HOM05D004641 ORTHO05D005871 3.2e-95 352.4 230 75.7
AUR62028790 Chenopodium quinoa HOM05D004641 ORTHO05D005871 4.1e-95 352.1 286 64.3
BcaC07g39267 Brassica carinata HOM05D004641 ORTHO05D005871 5.4e-95 351.7 276 65.6
C08p22760 Brassica napus HOM05D004641 ORTHO05D005871 5.4e-95 351.7 276 65.6
BolC8t49912H Brassica oleracea HOM05D004641 ORTHO05D005871 5.4e-95 351.7 276 65.6
Haze_12020 Corylus avellana HOM05D004641 ORTHO05D005871 5.4e-95 351.7 287 65.9
AUR62005767 Chenopodium quinoa HOM05D004641 ORTHO05D005871 7.0e-95 351.3 286 64.3
Sp1g21940 Schrenkiella parvula HOM05D004641 ORTHO05D005871 9.2e-95 350.9 281 64.1
Thhalv10008398m.g Eutrema salsugineum HOM05D004641 ORTHO05D005871 2.0e-94 349.7 287 63.1
CARHR025060 Cardamine hirsuta HOM05D004641 ORTHO05D005871 2.7e-94 349.4 281 65.8
A08p27580 Brassica napus HOM05D004641 ORTHO05D005871 3.5e-94 349.0 281 64.4
Nitab4.5_0012364g0020 Nicotiana tabacum HOM05D004641 ORTHO05D005871 3.5e-94 349.0 280 67.5
SGA_v2.0_scaffold302G47825 Striga asiatica HOM05D004641 ORTHO05D005871 3.5e-94 349.0 278 66.9
BraA08t34696Z Brassica rapa HOM05D004641 ORTHO05D005871 4.6e-94 348.6 276 65.2
BcaB03g12011 Brassica carinata HOM05D004641 ORTHO05D005871 1.7e-93 346.7 281 64.1
MD16G1074100 Malus domestica HOM05D004641 ORTHO05D005871 2.3e-93 346.3 278 64.4
Rhsim07G0243500 Rhododendron simsii HOM05D004641 ORTHO05D005871 3.9e-93 345.5 229 74.7
arahy.Tifrunner.gnm1.ann1.ITG5Q4 Arachis hypogaea HOM05D004641 ORTHO05D005871 8.6e-93 344.4 292 62.7
Carub.0001s2410 Capsella rubella HOM05D004641 ORTHO05D005871 1.9e-92 343.2 276 65.2
CsaV3_2G010800 Cucumis sativus L. HOM05D004641 ORTHO05D005871 1.9e-92 343.2 280 63.9
Os07g0628600 Oryza sativa ssp. japonica HOM05D004641 ORTHO05D005871 4.3e-92 342.0 289 63.0
SGA_v2.0_scaffold53G19380 Striga asiatica HOM05D004641 ORTHO05D005871 2.1e-91 339.7 278 65.8
MELO3C008530.2 Cucumis melo HOM05D004641 ORTHO05D005871 8.0e-91 337.8 265 66.0
EL10Ac6g13193 Beta vulgaris HOM05D004641 ORTHO05D005871 1.2e-89 334.0 320 57.8
HPP92_016908 Vanilla planifolia HOM05D004641 ORTHO05D005871 1.3e-88 330.5 293 61.8
Ah.03g135170 Amaranthus hybridus HOM05D004641 ORTHO05D005871 3.2e-87 325.9 286 61.5
Lalb_Chr17g0340601 Lupinus albus HOM05D004641 ORTHO05D005871 1.2e-86 323.9 245 69.0
Sed0021592 Sechium edule HOM05D004641 ORTHO05D005871 1.6e-86 323.6 276 64.1
Dinv16637 Davidia involucrata HOM05D004641 ORTHO05D005871 7.3e-84 314.7 217 74.2
Sed0002473 Sechium edule HOM05D004641 ORTHO05D005871 1.2e-83 313.9 243 66.7
ATR0800G170 Amborella trichopoda HOM05D004641 ORTHO05D005871 1.4e-82 310.5 229 68.6
CDE04G3358 Ceratophyllum demersum HOM05D004641 ORTHO05D005871 1.4e-82 310.5 294 57.8
Psat0s2466g0040 Pisum sativum HOM05D004641 ORTHO05D005871 1.8e-82 310.1 237 66.7
Sp5g24800 Schrenkiella parvula HOM05D004641 ORTHO05D005871 1.5e-81 307.0 253 63.2
Oeu054890.1 Olea europaea HOM05D004641 ORTHO05D005871 8.3e-80 301.2 231 66.7
Oeu054889.1 Olea europaea HOM05D004641 ORTHO05D005871 3.2e-79 299.3 231 66.7
Lsat_1_v5_gn_8_52860 Lactuca sativa HOM05D004641 ORTHO05D005871 7.8e-78 294.7 276 56.9
SEGI_09090 Sequoiadendron giganteum HOM05D004641 ORTHO05D005871 3.9e-77 292.4 230 64.8
CARHR062650 Cardamine hirsuta HOM05D004641 ORTHO05D005871 4.0e-74 282.3 245 60.4
SHI55061 Sapria himalayana HOM05D004641 ORTHO05D005871 1.5e-73 280.4 232 60.3
AagrBONN_evm.TU.Sc2ySwM_228.4149 Anthoceros agrestis HOM05D004641 ORTHO05D005871 3.0e-69 266.2 291 48.8
Pp3c13_2030 Physcomitrium patens HOM05D004641 ORTHO05D005871 5.2e-66 255.4 289 46.4
Mapoly0064s0110 Marchantia polymorpha HOM05D004641 ORTHO05D005871 8.4e-64 248.1 263 50.6
MBI09_g01021_MAGBIO Magnolia biondii HOM05D004641 ORTHO05D005871 9.6e-60 234.6 213 63.4
Gohir.A01G134350 Gossypium hirsutum HOM05D004641 ORTHO05D005871 4.8e-59 232.3 154 73.4
Gohir.A07G052500 Gossypium hirsutum HOM05D004641 ORTHO05D005871 4.4e-57 225.7 139 78.4
unitig_22.g6910 Utricularia gibba HOM05D004641 ORTHO05D005871 3.8e-56 222.6 266 50.0
SMO114G0050 Selaginella moellendorffii HOM05D004641 ORTHO05D005871 1.4e-55 220.7 197 50.8
SMO117G0352 Selaginella moellendorffii HOM05D004641 ORTHO05D005871 5.4e-55 218.8 197 50.8
SMO254G0007 Selaginella moellendorffii HOM05D004641 ORTHO05D005871 1.6e-54 217.2 197 49.7
SMO254G0005 Selaginella moellendorffii HOM05D004641 ORTHO05D005871 3.5e-54 216.1 197 49.7
Gohir.A08G223448 Gossypium hirsutum HOM05D004641 ORTHO05D005871 1.8e-50 203.8 138 73.9
MBI02_g14195_MAGBIO Magnolia biondii HOM05D004641 ORTHO05D005871 2.4e-50 203.4 214 57.0
MBI05_g01300_MAGBIO Magnolia biondii HOM05D004641 ORTHO05D005871 7.6e-49 198.4 227 53.7
MBI10_g44256_MAGBIO Magnolia biondii HOM05D004641 ORTHO05D005871 1.9e-44 183.7 164 60.4
CDE08G0800 Ceratophyllum demersum HOM05D004641 ORTHO05D005871 4.3e-44 182.6 262 45.4
SMO254G0008 Selaginella moellendorffii HOM05D004641 ORTHO05D005871 5.6e-44 182.2 197 44.7
CBR_g31088 Chara braunii HOM05D000019 ORTHO05D000048 3.0e-37 159.8 187 46.5
MBI10_g06043_MAGBIO Magnolia biondii HOM05D004641 ORTHO05D005871 3.2e-31 139.8 200 46.0
Thecc.03G087000 Theobroma cacao HOM05D004641 ORTHO05D005871 2.1e-30 137.1 119 64.7
MD16G1073900 Malus domestica HOM05D004641 ORTHO05D005871 3.9e-29 132.9 83 78.3
Cre06.g285650 Chlamydomonas reinhardtii HOM05D004641 ORTHO05D005871 6.7e-29 132.1 190 40.5
SMO254G0011 Selaginella moellendorffii HOM05D004641 ORTHO05D005871 7.4e-28 128.6 182 37.9
C05p19510 Brassica napus HOM05D004641 ORTHO05D005871 1.4e-26 124.4 99 64.6
BolC5t30653H Brassica oleracea HOM05D004641 ORTHO05D005871 1.4e-26 124.4 99 64.6
TPR.G37129 Trifolium pratense HOM05D004641 ORTHO05D005871 2.4e-26 123.6 76 76.3
MBI10_g47167_MAGBIO Magnolia biondii HOM05D004641 ORTHO05D005871 1.5e-25 120.9 192 44.8
SMO254G0019 Selaginella moellendorffii HOM05D004641 ORTHO05D005871 7.7e-25 118.6 199 35.2
PRCOL_00006308 Prasinoderma coloniale HOM05D004641 ORTHO05D005871 3.9e-21 106.3 217 30.9
MBI13_g45115_MAGBIO Magnolia biondii HOM05D001399 ORTHO05D012970 1.3e-19 101.3 60 80.0
MBI14_g27757_MAGBIO Magnolia biondii HOM05D001399 ORTHO05D012970 3.1e-18 96.7 58 77.6
MBI18_g33078_MAGBIO Magnolia biondii HOM05D001399 ORTHO05D012970 9.1e-18 95.1 56 78.6
MBI11_g16036_MAGBIO Magnolia biondii HOM05D001399 ORTHO05D012970 2.6e-17 93.6 58 75.9
MBI16_g45579_MAGBIO Magnolia biondii HOM05D001399 ORTHO05D012970 3.2e-15 86.7 64 68.8
MBI13_g16082_MAGBIO Magnolia biondii HOM05D001399 ORTHO05D012970 8.8e-13 78.6 54 70.4
CBR_g31090 Chara braunii HOM05D004641 ORTHO05D005871 1.1e-12 78.2 91 44.0
A10p02040 Brassica napus HOM05D000207 ORTHO05D013918 4.8e-11 72.8 51 66.7
A02p16560 Brassica napus HOM05D004641 ORTHO05D005871 3.5e-09 66.6 95 41.1
A09p47150 Brassica napus HOM05D004641 ORTHO05D022007 5.5e-07 59.3 106 42.5
BraA09t40177Z Brassica rapa HOM05D004641 ORTHO05D022007 5.5e-07 59.3 106 42.5
PSO063G3446 Papaver somniferum HOM05D004334 ORTHO05D004763 3.6e-06 56.6 51 54.9
A09p29530 Brassica napus HOM05D004641 ORTHO05D022007 6.1e-06 55.8 55 54.5


User provided reference genes

Program Settings