Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Sabra11G0057100 Salix brachista HOM05D008010 ORTHO05D010085 1.1e-134 483.4 263 100.0
Sabra11G0053600 Salix brachista HOM05D004193 ORTHO05D004862 9.3e-126 453.8 276 92.4
Potri.011G069300 Populus trichocarpa HOM05D008010 ORTHO05D010085 1.8e-68 263.5 171 88.3
Potri.004G059300 Populus trichocarpa HOM05D008010 ORTHO05D010085 2.3e-68 263.1 263 63.5
Manes.16G041900 Manihot esculenta HOM05D008010 ORTHO05D010085 4.3e-54 215.7 264 55.7
Dinv12764 Davidia involucrata HOM05D008010 ORTHO05D010085 1.1e-49 201.1 267 51.3
GSVIVG01021245001 Vitis vinifera HOM05D008010 ORTHO05D010085 1.5e-46 190.7 229 55.5
Thecc.06G167300 Theobroma cacao HOM05D008010 ORTHO05D010085 2.5e-38 163.3 270 47.8
Haze_06192 Corylus avellana HOM05D008010 ORTHO05D010085 5.8e-35 152.1 250 46.4
Nn3g21124 Nelumbo nucifera HOM05D008010 ORTHO05D010085 1.7e-34 150.6 230 47.8
RcHm_v2.0_Chr5g0011411 Rosa chinensis HOM05D008010 ORTHO05D010085 2.2e-34 150.2 266 45.1
PGR031G1466 Punica granatum HOM05D008010 ORTHO05D010085 2.9e-34 149.8 212 50.0
Cfa000638 Carpinus fangiana HOM05D008010 ORTHO05D010085 3.8e-34 149.4 269 43.5
Prupe.4G065300 Prunus persica HOM05D008010 ORTHO05D010085 6.4e-34 148.7 248 45.6
Gorai.010G160200 Gossypium raimondii HOM05D008010 ORTHO05D010085 1.7e-31 140.6 250 44.8
Atru.chr10.1588_Atru.chr10.1589 Acer truncatum HOM05D008010 ORTHO05D010085 2.3e-31 140.2 267 44.2
FAN25G1163 Fragaria x ananassa HOM05D008010 ORTHO05D010085 5.1e-31 139.0 270 45.6
FvH4_3g07440 Fragaria vesca HOM05D008010 ORTHO05D010085 6.6e-31 138.7 266 45.1
CiPaw.09G071800 Carya illinoinensis HOM05D008010 ORTHO05D010085 1.9e-30 137.1 244 43.0
Gohir.A06G132400 Gossypium hirsutum HOM05D008010 ORTHO05D010085 1.9e-30 137.1 250 44.0
Gohir.D06G137900 Gossypium hirsutum HOM05D008010 ORTHO05D010085 3.3e-30 136.3 250 43.6
ClCG03G007530 Citrullus lanatus HOM05D008010 ORTHO05D010085 9.6e-30 134.8 274 39.8
QL05p048352 Quercus lobata HOM05D008010 ORTHO05D010085 1.2e-29 134.4 261 40.6
Cpa.g.sc7.102 Carica papaya HOM05D008010 ORTHO05D010085 2.1e-29 133.7 254 42.9
MELO3C002669.2 Cucumis melo HOM05D008010 ORTHO05D010085 1.8e-28 130.6 260 40.0
MD05G1297000 Malus domestica HOM05D008010 ORTHO05D010085 1.8e-28 130.6 261 42.1
FAN21G0683 Fragaria x ananassa HOM05D008010 ORTHO05D010085 4.4e-27 125.9 218 49.1
Lsat_1_v5_gn_1_109280 Lactuca sativa HOM05D008010 ORTHO05D010085 4.4e-27 125.9 219 44.7
CsaV3_1G033180 Cucumis sativus L. HOM05D008010 ORTHO05D010085 2.9e-26 123.2 268 36.9
Eucgr.D00477 Eucalyptus grandis HOM05D008010 ORTHO05D010085 3.8e-26 122.9 200 46.5
DCAR_027988 Daucus carota HOM05D008010 ORTHO05D010085 8.4e-26 121.7 194 49.0
Sed0009144 Sechium edule HOM05D008010 ORTHO05D010085 8.4e-26 121.7 259 39.4
Nitab4.5_0008462g0010 Nicotiana tabacum HOM05D008010 ORTHO05D010085 1.1e-25 121.3 211 44.1
Ciclev10016384m.g Citrus clementina HOM05D008010 ORTHO05D010085 1.9e-25 120.6 264 39.4
Nitab4.5_0002185g0010 Nicotiana tabacum HOM05D008010 ORTHO05D010085 1.9e-25 120.6 211 46.0
Cc02_g15430 Coffea canephora HOM05D008010 ORTHO05D010085 5.4e-25 119.0 244 41.0
Aqoxy1G02001 Aquilegia oxysepala HOM05D004193 ORTHO05D004862 7.1e-25 118.6 217 45.6
FAN16G3557 Fragaria x ananassa HOM05D008010 ORTHO05D010085 2.1e-24 117.1 281 40.2
Duzib160G0139 Durio zibethinus HOM05D008010 ORTHO05D010085 3.5e-24 116.3 235 42.6
Peaxi162Scf00371g00017 Petunia axillaris HOM05D008010 ORTHO05D010085 7.8e-24 115.2 212 43.4
CAN.G411.60 Capsicum annuum HOM05D008010 ORTHO05D010085 3.0e-23 113.2 211 43.6
Solyc02g072260.4 Solanum lycopersicum HOM05D008010 ORTHO05D010085 7.3e-22 108.6 210 41.9
Sopen02g021240 Solanum pennellii HOM05D008010 ORTHO05D010085 7.3e-22 108.6 210 41.0
PGSC0003DMG401028427 Solanum tuberosum HOM05D004193 ORTHO05D004862 7.3e-22 108.6 213 43.2
CDE03G0033 Ceratophyllum demersum HOM05D008010 ORTHO05D010085 4.8e-21 105.9 269 36.4
Lj6g0013702 Lotus japonicus HOM05D008010 ORTHO05D010085 5.3e-20 102.4 222 41.0
ATR0127G032 Amborella trichopoda HOM05D008010 ORTHO05D010085 6.9e-20 102.1 231 40.7
TAR624G0391 Trochodendron aralioides HOM05D008010 ORTHO05D010085 6.9e-20 102.1 265 35.8
AUR62039459 Chenopodium quinoa HOM05D008010 ORTHO05D010085 1.5e-19 100.9 211 43.6
THA.LOC104806163 Tarenaya hassleriana HOM05D008010 ORTHO05D010085 3.4e-19 99.8 250 40.8
Migut.M01016 Erythranthe guttata HOM05D008010 ORTHO05D010085 4.5e-19 99.4 193 41.5
EL10Ac8g20573 Beta vulgaris HOM05D008010 ORTHO05D010085 5.8e-19 99.0 225 42.2
AUR62027705 Chenopodium quinoa HOM05D008010 ORTHO05D010085 7.6e-19 98.6 203 39.9
SGA_v2.0_scaffold1G00067 Striga asiatica HOM05D008010 ORTHO05D010085 2.9e-18 96.7 250 37.6
Lalb_Chr18g0054681 Lupinus albus HOM05D008010 ORTHO05D010085 1.4e-17 94.4 187 38.0
ECA248G1583 Erigeron canadensis HOM05D000006 ORTHO05D000091 2.4e-17 93.6 238 40.8
AT4G18740 Arabidopsis thaliana HOM05D008010 ORTHO05D010085 3.2e-17 93.2 237 39.2
MBI07_g09547_MAGBIO Magnolia biondii HOM05D008010 ORTHO05D010085 4.2e-17 92.8 138 48.6
Ah.14g087050 Amaranthus hybridus HOM05D004193 ORTHO05D004862 1.6e-16 90.9 197 39.1
arahy.Tifrunner.gnm1.ann1.NGY302 Arachis hypogaea HOM05D008010 ORTHO05D010085 2.1e-16 90.5 192 39.6
Actinidia16781 Actinidia chinensis HOM05D008010 ORTHO05D010085 1.0e-15 88.2 161 41.0
arahy.Tifrunner.gnm1.ann1.42QDDD Arachis hypogaea HOM05D008010 ORTHO05D010085 1.0e-15 88.2 192 40.1
AL7G35510 Arabidopsis lyrata HOM05D008010 ORTHO05D010085 3.0e-15 86.7 207 42.0
CARHR225590 Cardamine hirsuta HOM05D008010 ORTHO05D010085 3.0e-15 86.7 228 38.2
BcaC09g51471 Brassica carinata HOM05D008010 ORTHO05D010085 5.1e-15 85.9 171 41.5
BolC1t01249H Brassica oleracea HOM05D008010 ORTHO05D010085 6.7e-15 85.5 171 41.5
BcaNung05918 Brassica carinata HOM05D008010 ORTHO05D010085 1.3e-13 81.3 240 36.7
BraA01t01022Z Brassica rapa HOM05D008010 ORTHO05D010085 1.6e-13 80.9 222 37.4
A01p10760 Brassica napus HOM05D008010 ORTHO05D010085 3.7e-13 79.7 222 37.4
C01p12720 Brassica napus HOM05D008010 ORTHO05D010085 6.2e-13 79.0 221 38.0
ECA248G2359 Erigeron canadensis HOM05D008010 ORTHO05D010085 6.2e-13 79.0 157 43.9
CDE04G0279 Ceratophyllum demersum HOM05D008010 ORTHO05D010085 6.9e-12 75.5 209 36.8
COL.COLO4_31257 Corchorus olitorius HOM05D008010 ORTHO05D010085 1.5e-11 74.3 113 45.1
Thhalv10026132m.g Eutrema salsugineum HOM05D008010 ORTHO05D010085 1.3e-10 71.2 170 37.6
SGA_v2.0_scaffold1G00251 Striga asiatica HOM05D008010 ORTHO05D010085 2.4e-09 67.0 108 43.5
Sp7g17440 Schrenkiella parvula HOM05D008010 ORTHO05D010085 1.3e-07 61.2 189 36.0
Aa31LG6G1450 Aethionema arabicum HOM05D008010 ORTHO05D010085 2.3e-07 60.5 168 34.5
MBI10_g20266_MAGBIO Magnolia biondii HOM05D005109 ORTHO05D006084 1.9e-06 57.4 285 29.5
unitig_8.g3734 Utricularia gibba HOM05D005109 ORTHO05D006084 7.4e-06 55.5 219 29.2
HanXRQChr04g0110521 Helianthus annuus HOM05D005109 ORTHO05D006084 9.6e-06 55.1 259 28.2


User provided reference genes

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