Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Sabra11G0055100 Salix brachista HOM05D005007 ORTHO05D006053 1.1e-75 286.6 147 100.0
Sabra11G0058300 Salix brachista HOM05D005007 ORTHO05D006053 4.1e-62 241.5 153 86.3
Potri.011G070400 Populus trichocarpa HOM05D005007 ORTHO05D006053 1.1e-35 153.7 99 80.8
Potri.004G061100 Populus trichocarpa HOM05D005007 ORTHO05D006053 3.1e-30 135.6 97 75.3
Sabra04G0040400 Salix brachista HOM05D005007 ORTHO05D006053 1.2e-29 133.7 114 63.2
Manes.16G043000 Manihot esculenta HOM05D005007 ORTHO05D006053 1.2e-24 117.1 103 66.0
COL.COLO4_31238 Corchorus olitorius HOM05D005007 ORTHO05D006053 3.4e-24 115.5 93 63.4
Thecc.06G165800 Theobroma cacao HOM05D005007 ORTHO05D006053 9.8e-24 114.0 95 62.1
Duzib160G0236 Durio zibethinus HOM05D005007 ORTHO05D006053 1.3e-23 113.6 129 50.4
GSVIVG01021255001 Vitis vinifera HOM05D005007 ORTHO05D006053 1.7e-23 113.2 90 63.3
Prupe.4G066600 Prunus persica HOM05D005007 ORTHO05D006053 2.2e-23 112.8 97 59.8
Duzib192G0425 Durio zibethinus HOM05D005007 ORTHO05D006053 4.8e-23 111.7 88 62.5
TWI09G0208 Tripterygium wilfordii HOM05D005007 ORTHO05D006053 2.4e-22 109.4 91 62.6
Duzib235G0435 Durio zibethinus HOM05D005007 ORTHO05D006053 9.1e-22 107.5 97 58.8
QL05p049974 Quercus lobata HOM05D005007 ORTHO05D006053 9.1e-22 107.5 93 55.9
Dinv12754 Davidia involucrata HOM05D005007 ORTHO05D006053 2.0e-21 106.3 88 62.5
MD10G1275600 Malus domestica HOM05D005007 ORTHO05D006053 4.5e-21 105.1 95 57.9
Ciclev10017907m.g Citrus clementina HOM05D005007 ORTHO05D006053 1.3e-20 103.6 86 65.1
Gohir.D05G156101 Gossypium hirsutum HOM05D005007 ORTHO05D006053 1.3e-20 103.6 74 64.9
MBI06_g18688_MAGBIO Magnolia biondii HOM05D005007 ORTHO05D006053 1.3e-20 103.6 86 61.6
Manes.17G059100 Manihot esculenta HOM05D005007 ORTHO05D006053 1.3e-20 103.6 88 67.0
Gohir.A05G153450 Gossypium hirsutum HOM05D005007 ORTHO05D006053 1.7e-20 103.2 84 57.1
MD00G1009400 Malus domestica HOM05D005007 ORTHO05D006053 6.6e-20 101.3 98 56.1
MD05G1295500 Malus domestica HOM05D005007 ORTHO05D006053 6.6e-20 101.3 98 56.1
Atru.chr10.1572 Acer truncatum HOM05D005007 ORTHO05D006053 1.5e-19 100.1 107 56.1
CiPaw.09G137100 Carya illinoinensis HOM05D005007 ORTHO05D006053 2.5e-19 99.4 92 54.3
Haze_05357 Corylus avellana HOM05D005007 ORTHO05D006053 3.3e-19 99.0 78 57.7
Dinv32340 Davidia involucrata HOM05D005007 ORTHO05D006053 5.5e-19 98.2 88 61.4
Actinidia35601 Actinidia chinensis HOM05D005007 ORTHO05D006053 1.2e-18 97.1 92 60.9
Hma1.2p1_0934F.1_g238510 Hydrangea macrophylla HOM05D005007 ORTHO05D006053 1.6e-18 96.7 80 62.5
Glyma.05G160900 Glycine max HOM05D005007 ORTHO05D006053 4.7e-18 95.1 86 58.1
arahy.Tifrunner.gnm1.ann1.VZS9XU Arachis hypogaea HOM05D005007 ORTHO05D006053 6.1e-18 94.7 81 59.3
Lalb_Chr13g0295281 Lupinus albus HOM05D005007 ORTHO05D006053 6.1e-18 94.7 80 60.0
arahy.Tifrunner.gnm1.ann1.HJBU6U Arachis hypogaea HOM05D005007 ORTHO05D006053 8.0e-18 94.4 81 59.3
Cpa.g.sc7.108 Carica papaya HOM05D005007 ORTHO05D006053 8.0e-18 94.4 151 39.1
Gohir.A06G133600 Gossypium hirsutum HOM05D005007 ORTHO05D006053 8.0e-18 94.4 97 55.7
CSS0026874 Camellia sinensis var. sinensis HOM05D005007 ORTHO05D006053 1.4e-17 93.6 94 55.3
AUR62039477 Chenopodium quinoa HOM05D005007 ORTHO05D006053 1.4e-17 93.6 98 45.9
MELO3C007199.2 Cucumis melo HOM05D005007 ORTHO05D006053 1.4e-17 93.6 85 54.1
CsaV3_6G051040 Cucumis sativus L. HOM05D005007 ORTHO05D006053 1.4e-17 93.6 85 54.1
Gohir.D06G138700 Gossypium hirsutum HOM05D005007 ORTHO05D006053 2.3e-17 92.8 96 54.2
Thecc.07G118400 Theobroma cacao HOM05D005007 ORTHO05D006053 2.3e-17 92.8 83 57.8
CSS0021075 Camellia sinensis var. sinensis HOM05D005007 ORTHO05D006053 3.0e-17 92.4 95 57.9
Gorai.010G161300 Gossypium raimondii HOM05D005007 ORTHO05D006053 3.0e-17 92.4 96 54.2
Cc02_g15570 Coffea canephora HOM05D005007 ORTHO05D006053 4.0e-17 92.0 94 56.4
Nn3g21105 Nelumbo nucifera HOM05D005007 ORTHO05D006053 4.0e-17 92.0 96 55.2
PGR042G3787 Punica granatum HOM05D005007 ORTHO05D006053 5.2e-17 91.7 75 61.3
Lalb_Chr03g0031211 Lupinus albus HOM05D005007 ORTHO05D006053 8.9e-17 90.9 79 62.0
ClCG01G023890 Citrullus lanatus HOM05D005007 ORTHO05D006053 1.2e-16 90.5 104 47.1
DCAR_003989 Daucus carota HOM05D005007 ORTHO05D006053 2.6e-16 89.4 77 55.8
Glyma.08G118300 Glycine max HOM05D005007 ORTHO05D006053 3.4e-16 89.0 87 57.5
FAN11G0120 Fragaria x ananassa HOM05D005007 ORTHO05D006053 4.4e-16 88.6 96 54.2
Lsat_1_v5_gn_7_25701 Lactuca sativa HOM05D005007 ORTHO05D006053 5.7e-16 88.2 93 53.8
Lalb_Chr01g0006861 Lupinus albus HOM05D005007 ORTHO05D006053 5.7e-16 88.2 89 55.1
Phvul.002G241000 Phaseolus vulgaris HOM05D005007 ORTHO05D006053 5.7e-16 88.2 79 58.2
SalBow8G4395 Salvia bowleyana HOM05D005007 ORTHO05D006053 5.7e-16 88.2 74 56.8
FvH4_3g07320 Fragaria vesca HOM05D005007 ORTHO05D006053 9.8e-16 87.4 96 53.1
Medtr8g087320 Medicago truncatula HOM05D005007 ORTHO05D006053 9.8e-16 87.4 76 56.6
Ca_17898_v3 Cicer arietinum L. HOM05D005007 ORTHO05D006053 1.3e-15 87.0 69 58.0
RcHm_v2.0_Chr5g0011631 Rosa chinensis HOM05D005007 ORTHO05D006053 1.3e-15 87.0 78 56.4
SalBow7G2341 Salvia bowleyana HOM05D005007 ORTHO05D006053 1.3e-15 87.0 89 56.2
Ah.14g087010 Amaranthus hybridus HOM05D005007 ORTHO05D006053 1.7e-15 86.7 100 48.0
Manes.15G095801 Manihot esculenta HOM05D005007 ORTHO05D006053 1.7e-15 86.7 77 54.5
Actinidia39520 Actinidia chinensis HOM05D005007 ORTHO05D006053 2.2e-15 86.3 79 58.2
Oeu060171.1 Olea europaea HOM05D005007 ORTHO05D006053 2.8e-15 85.9 96 49.0
Rhsim06G0209000 Rhododendron simsii HOM05D005007 ORTHO05D006053 2.8e-15 85.9 81 53.1
Sed0011988 Sechium edule HOM05D005007 ORTHO05D006053 2.8e-15 85.9 86 50.0
Cpa.g.sc77.26 Carica papaya HOM05D005007 ORTHO05D006053 3.7e-15 85.5 78 59.0
Ciclev10022947m.g Citrus clementina HOM05D005007 ORTHO05D006053 3.7e-15 85.5 78 53.8
HanXRQChr02g0038411 Helianthus annuus HOM05D005007 ORTHO05D006053 4.9e-15 85.1 87 57.5
Rhsim02G0146700 Rhododendron simsii HOM05D005007 ORTHO05D006053 4.9e-15 85.1 90 55.6
Migut.H01413 Erythranthe guttata HOM05D005007 ORTHO05D006053 1.1e-14 84.0 97 47.4
FAN21G0366 Fragaria x ananassa HOM05D005007 ORTHO05D006053 1.1e-14 84.0 100 49.0
Glyma.12G156400 Glycine max HOM05D005007 ORTHO05D006053 1.1e-14 84.0 97 50.5
COL.COLO4_17528 Corchorus olitorius HOM05D005007 ORTHO05D006053 1.4e-14 83.6 88 54.5
Oeu039881.1 Olea europaea HOM05D005007 ORTHO05D006053 1.4e-14 83.6 103 47.6
Psat7g068680 Pisum sativum HOM05D005007 ORTHO05D006053 1.8e-14 83.2 77 54.5
CDE10G0299 Ceratophyllum demersum HOM05D005007 ORTHO05D006053 2.4e-14 82.8 77 54.5
FAN16G2723 Fragaria x ananassa HOM05D005007 ORTHO05D006053 2.4e-14 82.8 96 52.1
Peaxi162Scf00202g00119 Petunia axillaris HOM05D005007 ORTHO05D006053 2.4e-14 82.8 77 62.3
QL08p025919 Quercus lobata HOM05D005007 ORTHO05D006053 3.1e-14 82.4 79 53.2
Sed0017213 Sechium edule HOM05D005007 ORTHO05D006053 4.1e-14 82.0 89 48.3
Migut.H01416 Erythranthe guttata HOM05D005007 ORTHO05D006053 5.4e-14 81.6 88 50.0
FAN25G2704 Fragaria x ananassa HOM05D005007 ORTHO05D006053 5.4e-14 81.6 96 52.1
Prupe.4G161500 Prunus persica HOM05D005007 ORTHO05D006053 5.4e-14 81.6 80 56.2
Haze_09314 Corylus avellana HOM05D005007 ORTHO05D006053 7.0e-14 81.3 62 59.7
TPR.G6805 Trifolium pratense HOM05D000213 ORTHO05D000426 7.0e-14 81.3 74 54.1
BcaB04g18501 Brassica carinata HOM05D005007 ORTHO05D006053 9.2e-14 80.9 87 49.4
ECA236G3784 Erigeron canadensis HOM05D005007 ORTHO05D006053 9.2e-14 80.9 81 54.3
Glyma.06G227850 Glycine max HOM05D005007 ORTHO05D006053 9.2e-14 80.9 83 51.8
Glyma.06G227900 Glycine max HOM05D005007 ORTHO05D006053 9.2e-14 80.9 83 51.8
Gorai.009G160600 Gossypium raimondii HOM05D005007 ORTHO05D006053 9.2e-14 80.9 61 59.0
TWI39G0558 Tripterygium wilfordii HOM05D005007 ORTHO05D006053 9.2e-14 80.9 84 56.0
CiPaw.12G113100 Carya illinoinensis HOM05D005007 ORTHO05D006053 2.0e-13 79.7 96 46.9
PGSC0003DMG400028468 Solanum tuberosum HOM05D005007 ORTHO05D006053 3.5e-13 79.0 92 54.3
Ah.09g233580 Amaranthus hybridus HOM05D005007 ORTHO05D006053 5.9e-13 78.2 77 51.9
C03p81500 Brassica napus HOM05D005007 ORTHO05D006053 5.9e-13 78.2 90 46.7
BolC3t20421H Brassica oleracea HOM05D005007 ORTHO05D006053 5.9e-13 78.2 90 46.7
CARHR225660 Cardamine hirsuta HOM05D005007 ORTHO05D006053 5.9e-13 78.2 87 46.0
DCAR_007938 Daucus carota HOM05D005007 ORTHO05D006053 5.9e-13 78.2 75 52.0
Gohir.D01G042700 Gossypium hirsutum HOM05D005007 ORTHO05D006053 5.9e-13 78.2 80 51.2
Gorai.002G053600 Gossypium raimondii HOM05D005007 ORTHO05D006053 5.9e-13 78.2 80 51.2
RcHm_v2.0_Chr5g0030711 Rosa chinensis HOM05D005007 ORTHO05D006053 5.9e-13 78.2 71 57.7
ClCG07G010220 Citrullus lanatus HOM05D005007 ORTHO05D006053 7.8e-13 77.8 84 54.8
Phvul.011G165600 Phaseolus vulgaris HOM05D005007 ORTHO05D006053 7.8e-13 77.8 76 52.6
MD11G1264800 Malus domestica HOM05D005007 ORTHO05D006053 1.0e-12 77.4 68 57.4
Sabra16G0257800 Salix brachista HOM05D005007 ORTHO05D006053 1.3e-12 77.0 80 55.0
VMungo1127G1862 Vigna mungo HOM05D005007 ORTHO05D006053 1.3e-12 77.0 77 53.2
Eucgr.F01249 Eucalyptus grandis HOM05D005007 ORTHO05D006053 1.7e-12 76.6 92 50.0
Atru.chr2.2102 Acer truncatum HOM05D005007 ORTHO05D006053 2.3e-12 76.3 99 48.5
BraA08t33391Z Brassica rapa HOM05D005007 ORTHO05D006053 2.9e-12 75.9 78 52.6
Carub.0007s2243 Capsella rubella HOM05D005007 ORTHO05D006053 2.9e-12 75.9 92 46.7
Nitab4.5_0007471g0020 Nicotiana tabacum HOM05D005007 ORTHO05D006053 2.9e-12 75.9 69 59.4
arahy.Tifrunner.gnm1.ann1.G1B0F8 Arachis hypogaea HOM05D005007 ORTHO05D006053 3.8e-12 75.5 82 52.4
Actinidia35210 Actinidia chinensis HOM05D005007 ORTHO05D006053 5.0e-12 75.1 78 52.6
Gohir.A01G053200 Gossypium hirsutum HOM05D005007 ORTHO05D006053 5.0e-12 75.1 80 50.0
MSTRG.7429 Avicennia marina HOM05D005007 ORTHO05D006053 6.6e-12 74.7 88 46.6
CANSAT35G0905 Cannabis sativa HOM05D005007 ORTHO05D006053 6.6e-12 74.7 64 53.1
Aqoxy4G00249 Aquilegia oxysepala HOM05D005007 ORTHO05D006053 8.6e-12 74.3 65 61.5
Sp7g17510 Schrenkiella parvula HOM05D005007 ORTHO05D006053 8.6e-12 74.3 87 44.8
Solyc02g072170.3 Solanum lycopersicum HOM05D005007 ORTHO05D006053 8.6e-12 74.3 78 55.1
vmacro11948 Vaccinium macrocarpon HOM05D005007 ORTHO05D006053 8.6e-12 74.3 84 50.0
Nitab4.5_0000437g0140 Nicotiana tabacum HOM05D005007 ORTHO05D006053 1.1e-11 73.9 69 58.0
Potri.001G393001 Populus trichocarpa HOM05D005007 ORTHO05D006053 1.5e-11 73.6 97 46.4
Sopen02g021150 Solanum pennellii HOM05D005007 ORTHO05D006053 1.5e-11 73.6 78 55.1
Actinidia16774 Actinidia chinensis HOM05D005007 ORTHO05D006053 1.9e-11 73.2 53 66.0
Eucgr.D00467 Eucalyptus grandis HOM05D005007 ORTHO05D006053 2.5e-11 72.8 84 42.9
Thhalv10027446m.g Eutrema salsugineum HOM05D005007 ORTHO05D006053 5.6e-11 71.6 89 43.8
Sed0025620 Sechium edule HOM05D005007 ORTHO05D006053 5.6e-11 71.6 63 58.7
EL10Ac4g08365 Beta vulgaris HOM05D005007 ORTHO05D006053 9.5e-11 70.9 50 66.0
DCAR_005144 Daucus carota HOM05D005007 ORTHO05D006053 1.6e-10 70.1 107 43.0
HPP92_008753 Vanilla planifolia HOM05D005007 ORTHO05D006053 3.6e-10 68.9 74 47.3
Migut.M00716 Erythranthe guttata HOM05D005007 ORTHO05D006053 8.0e-10 67.8 66 56.1
Lsat_1_v5_gn_5_126541 Lactuca sativa HOM05D005007 ORTHO05D006053 8.0e-10 67.8 87 46.0
CsaV3_4G008110 Cucumis sativus L. HOM05D005007 ORTHO05D006053 1.4e-09 67.0 81 48.1
CiPaw.11G159400 Carya illinoinensis HOM05D005007 ORTHO05D006053 6.8e-09 64.7 83 42.2
CDE10G1215 Ceratophyllum demersum HOM05D005007 ORTHO05D006053 2.0e-08 63.2 41 68.3
Potri.011G108700 Populus trichocarpa HOM05D005007 ORTHO05D006053 2.0e-08 63.2 98 43.9
Sc16g0007670 Simmondsia chinensis HOM05D005007 ORTHO05D006053 2.0e-08 63.2 70 51.4
unitig_0.g744 Utricularia gibba HOM05D005007 ORTHO05D006053 2.6e-08 62.8 72 51.4
Nn6g34499 Nelumbo nucifera HOM05D005007 ORTHO05D006053 3.4e-08 62.4 50 66.0
Peaxi162Scf00111g01466 Petunia axillaris HOM05D005007 ORTHO05D006053 3.4e-08 62.4 74 48.6
Potri.001G389150 Populus trichocarpa HOM05D005007 ORTHO05D006053 4.4e-08 62.0 94 44.7
ATR0012G015 Amborella trichopoda HOM05D005007 ORTHO05D006053 1.3e-07 60.5 61 50.8
Actinidia18804 Actinidia chinensis HOM05D005007 ORTHO05D006053 2.2e-07 59.7 65 52.3
SGA_v2.0_scaffold181G39748 Striga asiatica HOM05D002453 ORTHO05D008746 2.9e-07 59.3 41 63.4
Sabra11G0096200 Salix brachista HOM05D005007 ORTHO05D006053 4.9e-07 58.5 66 50.0
PGSC0003DMG400044408 Solanum tuberosum HOM05D005007 ORTHO05D006053 1.9e-06 56.6 87 42.5
SGA_v2.0_scaffold181G39749 Striga asiatica HOM05D002453 ORTHO05D008746 5.4e-06 55.1 61 47.5


User provided reference genes

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