Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Sabra11G0049800 Salix brachista HOM05D003748 ORTHO05D004108 5.3e-69 264.2 134 100.0
Sabra19G0072000 Salix brachista HOM05D003748 ORTHO05D004108 7.0e-61 237.3 134 91.8
Sabra15G0067400 Salix brachista HOM05D003748 ORTHO05D004108 2.7e-52 208.8 124 88.7
Sabra11G0052500 Salix brachista HOM05D003748 ORTHO05D004108 6.3e-46 187.6 119 86.6
Sabra11G0051700 Salix brachista HOM05D000022 ORTHO05D000071 1.2e-44 183.3 106 89.6
Sabra16G0264300 Salix brachista HOM05D003748 ORTHO05D004108 4.7e-41 171.4 105 89.5
Sabra15G0037700 Salix brachista HOM05D003748 ORTHO05D004108 3.0e-40 168.7 119 80.7
Potri.019G083300 Populus trichocarpa HOM05D003748 ORTHO05D004108 7.8e-36 154.1 114 74.6
Potri.013G112800 Populus trichocarpa HOM05D003748 ORTHO05D004108 1.2e-31 140.2 114 70.2
Sabra13G0095600 Salix brachista HOM05D003748 ORTHO05D004108 2.0e-28 129.4 119 63.0
Manes.02G192300 Manihot esculenta HOM05D003748 ORTHO05D004108 9.5e-26 120.6 97 68.0
CiPaw.07G159900 Carya illinoinensis HOM05D003748 ORTHO05D004108 1.2e-23 113.6 104 65.4
Sabra10G0094400 Salix brachista HOM05D003748 ORTHO05D004108 1.5e-23 113.2 78 79.5
Manes.18G101100 Manihot esculenta HOM05D003748 ORTHO05D004108 4.4e-23 111.7 86 69.8
Prupe.8G057500 Prunus persica HOM05D003748 ORTHO05D004108 2.2e-22 109.4 110 60.9
Thecc.08G183900 Theobroma cacao HOM05D003748 ORTHO05D004108 3.7e-22 108.6 99 60.6
MD10G1048200 Malus domestica HOM05D003748 ORTHO05D004108 9.2e-21 104.0 105 60.0
TPR.G22711 Trifolium pratense HOM05D003748 ORTHO05D004108 1.2e-20 103.6 92 58.7
MD05G1041700 Malus domestica HOM05D003748 ORTHO05D004108 1.6e-20 103.2 110 62.7
Gorai.013G140200 Gossypium raimondii HOM05D003748 ORTHO05D004108 2.1e-20 102.8 108 55.6
TAR381G1195 Trochodendron aralioides HOM05D003748 ORTHO05D004108 2.1e-20 102.8 81 67.9
Psat6g091520 Pisum sativum HOM05D003748 ORTHO05D004108 2.7e-20 102.4 102 53.9
RcHm_v2.0_Chr2g0129441 Rosa chinensis HOM05D003748 ORTHO05D004108 2.7e-20 102.4 98 60.2
VMungo0720G2071 Vigna mungo HOM05D003748 ORTHO05D004108 2.7e-20 102.4 107 55.1
FAN02G1714 Fragaria x ananassa HOM05D001133 ORTHO05D004108 6.0e-20 101.3 110 55.5
Duzib177G0476 Durio zibethinus HOM05D003748 ORTHO05D004108 7.8e-20 100.9 93 61.3
Phvul.007G245700 Phaseolus vulgaris HOM05D003748 ORTHO05D004108 1.0e-19 100.5 107 55.1
DCAR_014361 Daucus carota HOM05D003748 ORTHO05D004108 1.7e-19 99.8 82 63.4
Gohir.D13G125300 Gossypium hirsutum HOM05D003748 ORTHO05D004108 2.3e-19 99.4 108 54.6
arahy.Tifrunner.gnm1.ann1.W37VG6 Arachis hypogaea HOM05D003748 ORTHO05D004108 3.9e-19 98.6 88 60.2
Haze_22521 Corylus avellana HOM05D003748 ORTHO05D004108 3.9e-19 98.6 116 49.1
Dinv03390 Davidia involucrata HOM05D003748 ORTHO05D004108 3.9e-19 98.6 109 55.0
Oeu039618.1 Olea europaea HOM05D003748 ORTHO05D004108 5.1e-19 98.2 95 55.8
COL.COLO4_04234 Corchorus olitorius HOM05D003748 ORTHO05D004108 6.6e-19 97.8 66 74.2
unitig_61.g26074 Utricularia gibba HOM05D003748 ORTHO05D004108 6.6e-19 97.8 93 58.1
Ciclev10002870m.g Citrus clementina HOM05D003748 ORTHO05D004108 8.6e-19 97.4 98 57.1
FAN14G5726 Fragaria x ananassa HOM05D003748 ORTHO05D004108 8.6e-19 97.4 102 56.9
arahy.Tifrunner.gnm1.ann1.2U5UH6 Arachis hypogaea HOM05D003748 ORTHO05D004108 1.1e-18 97.1 98 55.1
FvH4_6g27290 Fragaria vesca HOM05D003748 ORTHO05D004108 1.5e-18 96.7 101 56.4
Glyma.02G158200 Glycine max HOM05D003748 ORTHO05D004108 1.5e-18 96.7 69 71.0
FAN05G3939 Fragaria x ananassa HOM05D003748 ORTHO05D004108 1.9e-18 96.3 95 58.9
FAN09G3472 Fragaria x ananassa HOM05D003748 ORTHO05D004108 1.9e-18 96.3 95 60.0
CANSAT64G1217 Cannabis sativa HOM05D003748 ORTHO05D004108 2.5e-18 95.9 108 57.4
Gohir.A13G121200 Gossypium hirsutum HOM05D003748 ORTHO05D004108 2.5e-18 95.9 111 51.4
QL02p033706 Quercus lobata HOM05D003748 ORTHO05D004108 2.5e-18 95.9 93 58.1
Ca_02751_v3 Cicer arietinum L. HOM05D003748 ORTHO05D004108 3.3e-18 95.5 94 55.3
Cfa013847 Carpinus fangiana HOM05D003748 ORTHO05D004108 4.3e-18 95.1 90 55.6
Hma1.2p1_0342F.1_g130730 Hydrangea macrophylla HOM05D003748 ORTHO05D004108 4.3e-18 95.1 93 58.1
GSVIVG01012792001 Vitis vinifera HOM05D003748 ORTHO05D004108 4.3e-18 95.1 86 58.1
Nn5g27683 Nelumbo nucifera HOM05D003748 ORTHO05D004108 7.3e-18 94.4 98 55.1
SGA_v2.0_scaffold25G11069 Striga asiatica HOM05D003748 ORTHO05D004108 9.5e-18 94.0 99 58.6
MSTRG.22452 Avicennia marina HOM05D003748 ORTHO05D004108 1.2e-17 93.6 101 55.4
vmacro12490 Vaccinium macrocarpon HOM05D003748 ORTHO05D004108 1.2e-17 93.6 108 49.1
MBI16_g07669_MAGBIO Magnolia biondii HOM05D003748 ORTHO05D004108 1.6e-17 93.2 95 57.9
Lj5g0010218 Lotus japonicus HOM05D003748 ORTHO05D004108 2.1e-17 92.8 68 67.6
A02p17590 Brassica napus HOM05D003748 ORTHO05D004108 2.8e-17 92.4 93 54.8
BraA02t06805Z Brassica rapa HOM05D003748 ORTHO05D004108 2.8e-17 92.4 93 54.8
Sed0020042 Sechium edule HOM05D003748 ORTHO05D004108 2.8e-17 92.4 103 54.4
Atru.chr13.1761_Atru.chr13.1772 Acer truncatum HOM05D003748 ORTHO05D004108 3.6e-17 92.0 109 51.4
BcaC03g15314 Brassica carinata HOM05D003748 ORTHO05D004108 3.6e-17 92.0 98 51.0
C02p29240 Brassica napus HOM05D003748 ORTHO05D004108 3.6e-17 92.0 98 51.0
BolC2t08974H Brassica oleracea HOM05D003748 ORTHO05D004108 3.6e-17 92.0 98 51.0
CSS0008856 Camellia sinensis var. sinensis HOM05D003748 ORTHO05D004108 3.6e-17 92.0 99 54.5
Dinv41714 Davidia involucrata HOM05D003748 ORTHO05D004108 3.6e-17 92.0 114 48.2
Oeu038195.1 Olea europaea HOM05D003748 ORTHO05D004108 3.6e-17 92.0 70 67.1
SalBow6G2274 Salvia bowleyana HOM05D003748 ORTHO05D004108 3.6e-17 92.0 110 52.7
Actinidia02577 Actinidia chinensis HOM05D003748 ORTHO05D004108 6.2e-17 91.3 95 53.7
Aqoxy5G02591 Aquilegia oxysepala HOM05D003748 ORTHO05D004108 6.2e-17 91.3 82 62.2
BcaB05g24695 Brassica carinata HOM05D003748 ORTHO05D004108 6.2e-17 91.3 93 53.8
MD11G1194700 Malus domestica HOM05D003748 ORTHO05D004108 8.1e-17 90.9 81 60.5
THA.LOC104800113 Tarenaya hassleriana HOM05D003748 ORTHO05D004108 8.1e-17 90.9 92 55.4
Lj7A290T41 Lonicera japonica HOM05D003748 ORTHO05D004108 1.1e-16 90.5 83 60.2
Sed0001630 Sechium edule HOM05D003748 ORTHO05D004108 1.1e-16 90.5 107 52.3
Solyc06g065370.3 Solanum lycopersicum HOM05D003748 ORTHO05D004108 1.4e-16 90.1 103 50.5
ATR0584G219 Amborella trichopoda HOM05D003748 ORTHO05D004108 1.8e-16 89.7 99 51.5
AT1G71950 Arabidopsis thaliana HOM05D003748 ORTHO05D004108 1.8e-16 89.7 83 55.4
THA.LOC104809742 Tarenaya hassleriana HOM05D003748 ORTHO05D004108 1.8e-16 89.7 97 50.5
BraA07t31377Z Brassica rapa HOM05D003748 ORTHO05D004108 2.3e-16 89.4 93 52.7
Cpa.g.sc66.42 Carica papaya HOM05D003748 ORTHO05D004108 2.3e-16 89.4 81 59.3
arahy.Tifrunner.gnm1.ann1.14DQKS Arachis hypogaea HOM05D003748 ORTHO05D004108 3.1e-16 89.0 76 61.8
Rhsim06G0096300 Rhododendron simsii HOM05D003748 ORTHO05D004108 3.1e-16 89.0 100 50.0
Carub.0002s1873 Capsella rubella HOM05D003748 ORTHO05D004108 4.0e-16 88.6 87 56.3
Migut.N03349 Erythranthe guttata HOM05D003748 ORTHO05D004108 4.0e-16 88.6 109 51.4
Sed0006671 Sechium edule HOM05D003748 ORTHO05D004108 4.0e-16 88.6 105 49.5
arahy.Tifrunner.gnm1.ann1.V86M3D Arachis hypogaea HOM05D003748 ORTHO05D004108 5.2e-16 88.2 94 51.1
CAN.G199.10 Capsicum annuum HOM05D003748 ORTHO05D004108 5.2e-16 88.2 91 54.9
ClCG09G010270 Citrullus lanatus HOM05D003748 ORTHO05D004108 5.2e-16 88.2 78 59.0
ClCG09G010620 Citrullus lanatus HOM05D003748 ORTHO05D004108 5.2e-16 88.2 75 58.7
Cc10_g10370 Coffea canephora HOM05D003748 ORTHO05D004108 5.2e-16 88.2 71 63.4
Thhalv10019318m.g Eutrema salsugineum HOM05D003748 ORTHO05D004108 5.2e-16 88.2 92 51.1
Medtr1g050640 Medicago truncatula HOM05D003748 ORTHO05D004108 5.2e-16 88.2 68 63.2
Oeu021207.1 Olea europaea HOM05D003748 ORTHO05D004108 5.2e-16 88.2 92 53.3
Sopen06g023850 Solanum pennellii HOM05D003748 ORTHO05D004108 5.2e-16 88.2 86 55.8
TWI74G0020 Tripterygium wilfordii HOM05D003748 ORTHO05D004108 5.2e-16 88.2 100 53.0
AL2G31560 Arabidopsis lyrata HOM05D003748 ORTHO05D004108 6.8e-16 87.8 83 57.8
Lsat_1_v5_gn_6_110641 Lactuca sativa HOM05D003748 ORTHO05D004108 6.8e-16 87.8 105 50.5
CsaV3_7G024410 Cucumis sativus L. HOM05D003748 ORTHO05D004108 8.9e-16 87.4 101 48.5
MBI09_g01930_MAGBIO Magnolia biondii HOM05D003748 ORTHO05D004108 8.9e-16 87.4 75 58.7
PGR042G3867 Punica granatum HOM05D003748 ORTHO05D004108 8.9e-16 87.4 108 50.9
Aa31LG4G8670 Aethionema arabicum HOM05D003748 ORTHO05D004108 1.2e-15 87.0 93 52.7
HanXRQChr09g0260341 Helianthus annuus HOM05D003748 ORTHO05D004108 1.2e-15 87.0 81 59.3
Peaxi162Scf00268g01130 Petunia axillaris HOM05D003748 ORTHO05D004108 1.2e-15 87.0 97 50.5
TWI53G0775 Tripterygium wilfordii HOM05D003748 ORTHO05D004108 1.2e-15 87.0 97 51.5
Nitab4.5_0000303g0140 Nicotiana tabacum HOM05D003748 ORTHO05D004108 1.5e-15 86.7 96 52.1
Peaxi162Scf00560g00736 Petunia axillaris HOM05D003748 ORTHO05D004108 1.5e-15 86.7 92 50.0
CARHR064760 Cardamine hirsuta HOM05D003748 ORTHO05D004108 2.6e-15 85.9 95 51.6
CsaV3_7G024420 Cucumis sativus L. HOM05D003748 ORTHO05D004108 2.6e-15 85.9 78 56.4
Sp5g27020 Schrenkiella parvula HOM05D003748 ORTHO05D004108 3.4e-15 85.5 101 46.5
MELO3C028637.2 Cucumis melo HOM05D003748 ORTHO05D004108 4.4e-15 85.1 80 55.0
Eucgr.F02610 Eucalyptus grandis HOM05D003748 ORTHO05D004108 4.4e-15 85.1 104 47.1
PGSC0003DMG400000891 Solanum tuberosum HOM05D003748 ORTHO05D004108 4.4e-15 85.1 78 56.4
HPP92_003143 Vanilla planifolia HOM05D003748 ORTHO05D004108 4.4e-15 85.1 105 47.6
HPP92_003146 Vanilla planifolia HOM05D003748 ORTHO05D004108 5.8e-15 84.7 80 56.2
MELO3C024124.2 Cucumis melo HOM05D003748 ORTHO05D004108 7.6e-15 84.3 71 59.2
HanXRQChr05g0150261 Helianthus annuus HOM05D003748 ORTHO05D004108 9.9e-15 84.0 99 54.5
Lalb_Chr01g0010201 Lupinus albus HOM05D003748 ORTHO05D004108 9.9e-15 84.0 99 50.5
PSO063G2175 Papaver somniferum HOM05D003748 ORTHO05D004108 9.9e-15 84.0 100 49.0
BcaB03g14916 Brassica carinata HOM05D003748 ORTHO05D004108 1.3e-14 83.6 81 55.6
MELO3C023644.2 Cucumis melo HOM05D003748 ORTHO05D004108 1.3e-14 83.6 108 49.1
PSO017G4343 Papaver somniferum HOM05D003748 ORTHO05D004108 1.3e-14 83.6 100 48.0
A07p38120 Brassica napus HOM05D003748 ORTHO05D004108 1.7e-14 83.2 81 55.6
CsaV3_2G033500 Cucumis sativus L. HOM05D003748 ORTHO05D004108 1.7e-14 83.2 82 56.1
HanXRQChr05g0150061 Helianthus annuus HOM05D003748 ORTHO05D004108 1.7e-14 83.2 125 46.4
Lalb_Chr19g0129451 Lupinus albus HOM05D003748 ORTHO05D004108 2.2e-14 82.8 72 56.9
C06p46040 Brassica napus HOM05D003748 ORTHO05D004108 2.9e-14 82.4 75 54.7
ClCG11G008120 Citrullus lanatus HOM05D003748 ORTHO05D004108 2.9e-14 82.4 71 57.7
Os05g0432700 Oryza sativa ssp. japonica HOM05D003748 ORTHO05D004108 2.9e-14 82.4 110 45.5
BolC6t39656H Brassica oleracea HOM05D003748 ORTHO05D004108 3.7e-14 82.0 101 51.5
Nitab4.5_0002500g0020 Nicotiana tabacum HOM05D003748 ORTHO05D004108 3.7e-14 82.0 105 48.6
PGSC0003DMG400026076 Solanum tuberosum HOM05D003748 ORTHO05D004108 3.7e-14 82.0 79 55.7
SGA_v2.0_scaffold149G36586 Striga asiatica HOM05D003748 ORTHO05D004108 3.7e-14 82.0 101 52.5
BcaC08g46636 Brassica carinata HOM05D003748 ORTHO05D004108 4.9e-14 81.6 105 45.7
Zm00001eb289210 Zea mays HOM05D003748 ORTHO05D004108 4.9e-14 81.6 96 44.8
Lalb_Chr19g0129441 Lupinus albus HOM05D003748 ORTHO05D004108 6.4e-14 81.3 72 58.3
MELO3C008123.2 Cucumis melo HOM05D003748 ORTHO05D004108 8.4e-14 80.9 82 54.9
MBI09_g40923_MAGBIO Magnolia biondii HOM05D003748 ORTHO05D004108 8.4e-14 80.9 76 55.3
Nitab4.5_0000807g0010 Nicotiana tabacum HOM05D003748 ORTHO05D004108 1.1e-13 80.5 68 57.4
CDE06G2501 Ceratophyllum demersum HOM05D003748 ORTHO05D004108 1.4e-13 80.1 98 49.0
BcaC08g46634 Brassica carinata HOM05D003748 ORTHO05D004108 1.9e-13 79.7 81 48.1
CDE08G0273 Ceratophyllum demersum HOM05D003748 ORTHO05D004108 1.9e-13 79.7 93 49.5
SEGI_17758 Sequoiadendron giganteum HOM05D003748 ORTHO05D004108 1.9e-13 79.7 76 53.9
CANSAT56G2356 Cannabis sativa HOM05D003748 ORTHO05D004108 4.1e-13 78.6 77 58.4
Ciclev10007132m.g Citrus clementina HOM05D003748 ORTHO05D004108 4.1e-13 78.6 61 62.3
CsaV3_7G023810 Cucumis sativus L. HOM05D003748 ORTHO05D004108 1.6e-12 76.6 97 45.4
ECA246G4702 Erigeron canadensis HOM05D003748 ORTHO05D004108 2.1e-12 76.3 81 51.9
Sc23g0001260 Simmondsia chinensis HOM05D003748 ORTHO05D004108 3.5e-12 75.5 93 47.3
HPP92_001081 Vanilla planifolia HOM05D003748 ORTHO05D004108 3.5e-12 75.5 89 49.4
MELO3C008122.2 Cucumis melo HOM05D001651 ORTHO05D004108 6.0e-12 74.7 82 51.2
HPP92_025042 Vanilla planifolia HOM05D003748 ORTHO05D004108 6.0e-12 74.7 90 45.6
AUR62022695 Chenopodium quinoa HOM05D003748 ORTHO05D004108 7.8e-12 74.3 81 50.6
HPP92_000073 Vanilla planifolia HOM05D003748 ORTHO05D004108 1.3e-11 73.6 105 43.8
AUR62004641 Chenopodium quinoa HOM05D003748 ORTHO05D004108 3.0e-11 72.4 103 42.7
ECA232G2068 Erigeron canadensis HOM05D003748 ORTHO05D004108 3.0e-11 72.4 77 51.9
Sopen11g009560 Solanum pennellii HOM05D003748 ORTHO05D004108 3.0e-11 72.4 87 48.3
FAN14G4728 Fragaria x ananassa HOM05D003748 ORTHO05D004108 3.9e-11 72.0 98 44.9
HPP92_006842 Vanilla planifolia HOM05D003748 ORTHO05D004108 5.1e-11 71.6 84 44.0
Hund16797 Selenicereus undatus HOM05D003748 ORTHO05D004108 1.5e-10 70.1 82 51.2
CSS0005693 Camellia sinensis var. sinensis HOM05D003748 ORTHO05D004108 1.9e-10 69.7 86 47.7
MELO3C024123.2 Cucumis melo HOM05D003748 ORTHO05D004108 3.3e-10 68.9 106 41.5
Solyc11g018590.1 Solanum lycopersicum HOM05D003748 ORTHO05D004108 3.3e-10 68.9 67 52.2
ATR0620G025 Amborella trichopoda HOM05D003748 ORTHO05D004108 4.3e-10 68.6 90 42.2
FvH4_6g27310 Fragaria vesca HOM05D003748 ORTHO05D004108 5.6e-10 68.2 62 54.8
FAN02G3522 Fragaria x ananassa HOM05D003748 ORTHO05D004108 5.6e-10 68.2 62 54.8
EL10Ac1g00087 Beta vulgaris HOM05D003748 ORTHO05D004108 7.3e-10 67.8 95 42.1
Sed0014127 Sechium edule HOM05D003748 ORTHO05D004108 9.6e-10 67.4 71 49.3
ClCG09G010610 Citrullus lanatus HOM05D003748 ORTHO05D004108 2.8e-09 65.9 103 40.8
FAN09G2657 Fragaria x ananassa HOM05D003748 ORTHO05D004108 2.8e-09 65.9 62 53.2
Ah.05g178170 Amaranthus hybridus HOM05D003748 ORTHO05D004108 4.7e-09 65.1 101 38.6
Pp3c22_10010 Physcomitrium patens HOM05D003748 ORTHO05D004108 1.4e-08 63.5 120 38.3
CAN.G493.1 Capsicum annuum HOM05D003748 ORTHO05D004108 1.8e-08 63.2 80 45.0
Zm00001eb306170 Zea mays HOM05D003748 ORTHO05D004108 8.9e-08 60.8 67 50.7
MBI16_g10270_MAGBIO Magnolia biondii HOM05D000015 ORTHO05D001173 1.5e-07 60.1 114 39.5
Cc10_g10780 Coffea canephora HOM05D003748 ORTHO05D004108 9.9e-07 57.4 75 42.7
ECA246G3330 Erigeron canadensis HOM05D003748 ORTHO05D004108 1.7e-06 56.6 83 39.8
VMungo0464G2070 Vigna mungo HOM05D050936 ORTHO05D004108 1.7e-06 56.6 46 65.2
Os07g0438600 Oryza sativa ssp. japonica HOM05D003748 ORTHO05D004108 3.8e-06 55.5 86 40.7
MBI04_g22066_MAGBIO Magnolia biondii HOM05D000015 ORTHO05D004108 8.4e-06 54.3 74 47.3


User provided reference genes

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