Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Sabra11G0048200 Salix brachista HOM05D005280 ORTHO05D006253 4.9e-115 418.3 295 100.0
Manes.17G056200 Manihot esculenta HOM05D005280 ORTHO05D006253 6.0e-89 331.6 276 88.4
TWI38G0304 Tripterygium wilfordii HOM05D005280 ORTHO05D006253 1.9e-82 310.1 277 84.8
Lalb_Chr20g0117481 Lupinus albus HOM05D005280 ORTHO05D006253 2.1e-81 306.6 267 86.5
QL05p047377 Quercus lobata HOM05D005280 ORTHO05D006253 6.0e-81 305.1 275 82.9
Lj6g0027668 Lotus japonicus HOM05D005280 ORTHO05D006253 1.7e-80 303.5 274 83.2
MD10G1279400 Malus domestica HOM05D005280 ORTHO05D006253 1.5e-79 300.4 275 81.1
MD05G1300300 Malus domestica HOM05D005280 ORTHO05D006253 1.9e-79 300.1 275 80.7
ECA236G4327 Erigeron canadensis HOM05D005280 ORTHO05D006253 1.6e-78 297.0 278 80.6
AUR62017603 Chenopodium quinoa HOM05D005280 ORTHO05D006253 2.1e-78 296.6 275 82.5
SHI28515 Sapria himalayana HOM05D005280 ORTHO05D006253 2.1e-78 296.6 274 83.6
Ah.01g013480 Amaranthus hybridus HOM05D005280 ORTHO05D006253 3.6e-78 295.8 275 81.5
PGR042G3394 Punica granatum HOM05D005280 ORTHO05D006253 4.7e-78 295.4 276 79.3
Prupe.4G062000 Prunus persica HOM05D005280 ORTHO05D006253 8.1e-78 294.7 275 80.0
AUR62015144 Chenopodium quinoa HOM05D005280 ORTHO05D006253 1.2e-76 290.8 275 81.5
PGSC0003DMG400009000 Solanum tuberosum HOM05D005280 ORTHO05D006253 1.3e-75 287.3 278 79.1
Duzib160G0285 Durio zibethinus HOM05D005280 ORTHO05D006253 1.7e-75 287.0 277 78.3
Sc05g0007070 Simmondsia chinensis HOM05D005280 ORTHO05D006253 4.9e-75 285.4 276 77.5
Peaxi162Scf00871g00047 Petunia axillaris HOM05D005280 ORTHO05D006253 6.4e-75 285.0 278 78.8
CAN.G206.30 Capsicum annuum HOM05D005280 ORTHO05D006253 3.2e-74 282.7 276 79.0
PGSC0003DMG400008719 Solanum tuberosum HOM05D005280 ORTHO05D006253 5.4e-74 282.0 276 78.6
Potri.004G057600 Populus trichocarpa HOM05D005280 ORTHO05D006253 2.1e-73 280.0 276 83.0
Solyc03g062940.3 Solanum lycopersicum HOM05D005280 ORTHO05D006253 2.1e-73 280.0 276 78.3
Sopen03g015240 Solanum pennellii HOM05D005280 ORTHO05D006253 2.1e-73 280.0 276 78.3
FAN16G3700 Fragaria x ananassa HOM05D005280 ORTHO05D006253 5.1e-72 275.4 266 80.8
HanXRQChr05g0139841 Helianthus annuus HOM05D005280 ORTHO05D006253 4.8e-70 268.9 266 79.3
AT1G29260 Arabidopsis thaliana HOM05D005280 ORTHO05D006253 8.1e-70 268.1 277 76.5
Haze_06226 Corylus avellana HOM05D005280 ORTHO05D006253 1.5e-68 263.8 274 77.4
Nitab4.5_0000294g0080 Nicotiana tabacum HOM05D005280 ORTHO05D006253 1.7e-67 260.4 268 76.9
Nitab4.5_0001235g0070 Nicotiana tabacum HOM05D005280 ORTHO05D006253 2.2e-67 260.0 268 76.9
Carub.0001s2739 Capsella rubella HOM05D005280 ORTHO05D006253 3.5e-65 252.7 277 74.4
Lsat_1_v5_gn_7_24160 Lactuca sativa HOM05D005280 ORTHO05D006253 1.8e-64 250.4 278 73.7
CARHR028510 Cardamine hirsuta HOM05D005280 ORTHO05D006253 4.8e-62 242.3 277 73.3
Cpa.g.sc7.74 Carica papaya HOM05D005280 ORTHO05D006253 6.9e-61 238.4 277 74.4
Actinidia39510 Actinidia chinensis HOM05D005280 ORTHO05D006253 1.5e-60 237.3 278 73.0
CANSAT80G2107 Cannabis sativa HOM05D005280 ORTHO05D006253 2.9e-59 233.0 276 73.9
SGA_v2.0_scaffold1G00053 Striga asiatica HOM05D005280 ORTHO05D006253 2.9e-59 233.0 266 72.6
Thecc.06G170100 Theobroma cacao HOM05D005280 ORTHO05D006253 3.0e-56 223.0 277 70.8
DCAR_007943 Daucus carota HOM05D005280 ORTHO05D006253 5.1e-56 222.2 276 70.3
Lj1A206T60 Lonicera japonica HOM05D005280 ORTHO05D006253 6.7e-56 221.9 279 70.6
EL10Ac9g22853 Beta vulgaris HOM05D005280 ORTHO05D006253 1.9e-55 220.3 274 71.9
Dinv16775 Davidia involucrata HOM05D005280 ORTHO05D006253 1.9e-55 220.3 239 79.1
Migut.M01035 Erythranthe guttata HOM05D005280 ORTHO05D006253 3.3e-55 219.5 266 71.8
Potri.011G066600 Populus trichocarpa HOM05D005280 ORTHO05D006253 7.4e-55 218.4 208 85.6
Duzib192G0183 Durio zibethinus HOM05D005280 ORTHO05D006253 1.1e-53 214.5 277 69.3
Gohir.D10G037400 Gossypium hirsutum HOM05D005280 ORTHO05D006253 1.4e-53 214.2 277 69.3
Gorai.011G039400 Gossypium raimondii HOM05D005280 ORTHO05D006253 6.9e-53 211.8 276 69.6
Gohir.A10G036800 Gossypium hirsutum HOM05D005280 ORTHO05D006253 9.0e-53 211.5 277 69.0
AL1G42940 Arabidopsis lyrata HOM05D005280 ORTHO05D006253 5.8e-52 208.8 277 68.6
CSS0022801 Camellia sinensis var. sinensis HOM05D005280 ORTHO05D006253 2.2e-51 206.8 265 72.5
BolC3t19816H Brassica oleracea HOM05D005280 ORTHO05D006253 8.4e-51 204.9 277 69.0
Manes.16G040400 Manihot esculenta HOM05D005280 ORTHO05D006253 3.2e-50 203.0 276 71.0
Sabra04G0037300 Salix brachista HOM05D005280 ORTHO05D006253 4.2e-50 202.6 276 72.1
CBR_g23503 Chara braunii HOM05D005280 ORTHO05D006253 4.3e-47 192.6 277 62.1
arahy.Tifrunner.gnm1.ann1.8U8ZZM Arachis hypogaea HOM05D005280 ORTHO05D006253 1.2e-44 184.5 214 82.2
arahy.Tifrunner.gnm1.ann1.IM81E3 Arachis hypogaea HOM05D005280 ORTHO05D006253 1.2e-44 184.5 214 82.2
Glyma.13G229400 Glycine max HOM05D005280 ORTHO05D006253 1.3e-43 181.0 211 82.9
CDE10G0374 Ceratophyllum demersum HOM05D005280 ORTHO05D006253 1.7e-43 180.6 266 66.5
Cfa000612 Carpinus fangiana HOM05D005280 ORTHO05D006253 5.0e-43 179.1 274 64.6
Ciclev10015974m.g Citrus clementina HOM05D005280 ORTHO05D006253 1.4e-42 177.6 211 83.4
Phvul.006G175800 Phaseolus vulgaris HOM05D005280 ORTHO05D006253 1.9e-42 177.2 210 82.4
Dinv40681 Davidia involucrata HOM05D005280 ORTHO05D006253 2.5e-42 176.8 210 82.4
TPR.G11693 Trifolium pratense HOM05D005280 ORTHO05D006253 1.2e-41 174.5 94 81.9
FAN25G0161 Fragaria x ananassa HOM05D005280 ORTHO05D006253 4.6e-41 172.6 211 81.5
FAN11G1284 Fragaria x ananassa HOM05D005280 ORTHO05D006253 6.1e-41 172.2 211 80.6
RcHm_v2.0_Chr5g0010881 Rosa chinensis HOM05D005280 ORTHO05D006253 6.1e-41 172.2 212 80.7
Ca_00439_v3 Cicer arietinum L. HOM05D005280 ORTHO05D006253 7.9e-41 171.8 210 81.0
Atru.chr10.1658 Acer truncatum HOM05D005280 ORTHO05D006253 1.0e-40 171.4 211 80.6
FAN21G3704 Fragaria x ananassa HOM05D005280 ORTHO05D006253 1.0e-40 171.4 209 81.8
FvH4_3g07730 Fragaria vesca HOM05D005280 ORTHO05D006253 1.8e-40 170.6 211 81.0
Psat1g197880 Pisum sativum HOM05D005280 ORTHO05D006253 1.8e-40 170.6 205 82.9
MELO3C007211.2 Cucumis melo HOM05D005280 ORTHO05D006253 5.1e-40 169.1 207 81.6
Medtr2g016160 Medicago truncatula HOM05D005280 ORTHO05D006253 5.1e-40 169.1 208 80.8
A09p37140 Brassica napus HOM05D005280 ORTHO05D006253 1.1e-39 167.9 211 80.6
BraA09t39230Z Brassica rapa HOM05D005280 ORTHO05D006253 1.1e-39 167.9 211 80.6
VMungo0540G1202 Vigna mungo HOM05D005280 ORTHO05D006253 1.1e-39 167.9 101 75.2
ClCG01G023770 Citrullus lanatus HOM05D005280 ORTHO05D006253 1.5e-39 167.5 207 81.2
CsaV3_6G050930 Cucumis sativus L. HOM05D005280 ORTHO05D006253 1.5e-39 167.5 207 81.2
Thhalv10008237m.g Eutrema salsugineum HOM05D005280 ORTHO05D006253 2.0e-39 167.2 211 80.1
BcaC05g26943 Brassica carinata HOM05D005280 ORTHO05D006253 2.5e-39 166.8 211 80.6
C05p27910 Brassica napus HOM05D005280 ORTHO05D006253 2.5e-39 166.8 211 80.6
BolC5t31517H Brassica oleracea HOM05D005280 ORTHO05D006253 2.5e-39 166.8 211 80.6
CiPaw.10G059400 Carya illinoinensis HOM05D005280 ORTHO05D006253 4.3e-39 166.0 210 79.0
Sed0011601 Sechium edule HOM05D005280 ORTHO05D006253 5.7e-39 165.6 102 73.5
Sp1g25120 Schrenkiella parvula HOM05D005280 ORTHO05D006253 1.3e-38 164.5 210 79.5
THA.LOC104812639 Tarenaya hassleriana HOM05D005280 ORTHO05D006253 2.2e-38 163.7 210 78.6
Aa31LG6G6330 Aethionema arabicum HOM05D005280 ORTHO05D006253 6.3e-38 162.2 211 78.2
Glyma.15G083100 Glycine max HOM05D005280 ORTHO05D006253 6.3e-38 162.2 100 74.0
Hma1.2p1_1912F.1_g307320 Hydrangea macrophylla HOM05D005280 ORTHO05D006253 8.2e-38 161.8 102 70.6
THA.LOC104804949 Tarenaya hassleriana HOM05D005280 ORTHO05D006253 1.4e-37 161.0 208 79.8
SEGI_31924 Sequoiadendron giganteum HOM05D005280 ORTHO05D006253 3.1e-37 159.8 277 60.6
vmacro16064 Vaccinium macrocarpon HOM05D005280 ORTHO05D006253 1.2e-36 157.9 102 67.6
Cc02_g15040 Coffea canephora HOM05D005280 ORTHO05D006253 2.6e-36 156.8 99 70.7
BcaB07g32507 Brassica carinata HOM05D005280 ORTHO05D006253 5.9e-36 155.6 103 68.9
BraA08t34477Z Brassica rapa HOM05D005280 ORTHO05D006253 7.7e-36 155.2 103 68.0
COL.COLO4_31288 Corchorus olitorius HOM05D005280 ORTHO05D006253 7.7e-36 155.2 103 66.0
BcaC01g00082 Brassica carinata HOM05D005280 ORTHO05D006253 1.0e-35 154.8 103 68.0
C03p75590 Brassica napus HOM05D005280 ORTHO05D006253 1.0e-35 154.8 103 68.0
Rhsim02G0143200 Rhododendron simsii HOM05D005280 ORTHO05D006253 8.5e-35 151.8 93 69.9
Aqoxy170s003 Aquilegia oxysepala HOM05D005280 ORTHO05D006253 1.4e-34 151.0 102 65.7
Aqoxy7G03216 Aquilegia oxysepala HOM05D005280 ORTHO05D006253 1.4e-34 151.0 102 65.7
PSO782G3364 Papaver somniferum HOM05D005280 ORTHO05D006253 1.9e-34 150.6 98 67.3
Pp3c17_8040 Physcomitrium patens HOM05D005280 ORTHO05D006253 3.2e-34 149.8 277 58.8
MBI05_g10770_MAGBIO Magnolia biondii HOM05D005280 ORTHO05D006253 4.2e-34 149.4 102 65.7
MBI07_g43934_MAGBIO Magnolia biondii HOM05D005280 ORTHO05D006253 7.2e-34 148.7 102 65.7
PRCOL_00004365 Prasinoderma coloniale HOM05D005280 ORTHO05D006253 7.2e-34 148.7 279 49.5
HPP92_008751 Vanilla planifolia HOM05D005280 ORTHO05D006253 7.2e-34 148.7 210 75.7
BcaB03g12145 Brassica carinata HOM05D005280 ORTHO05D006253 9.4e-34 148.3 103 63.1
Mapoly0030s0014 Marchantia polymorpha HOM05D005280 ORTHO05D006253 2.1e-33 147.1 277 58.8
TAR629G2088 Trochodendron aralioides HOM05D005280 ORTHO05D006253 4.7e-33 146.0 102 61.8
unitig_699.g19366 Utricularia gibba HOM05D005280 ORTHO05D006253 6.1e-33 145.6 197 79.2
PSO229G0003 Papaver somniferum HOM05D005280 ORTHO05D006253 1.4e-32 144.4 103 64.1
PSO675G8759 Papaver somniferum HOM05D005280 ORTHO05D006253 1.4e-32 144.4 93 67.7
Nn1g04427 Nelumbo nucifera HOM05D005280 ORTHO05D006253 2.3e-32 143.7 102 60.8
SMO119G0322 Selaginella moellendorffii HOM05D005280 ORTHO05D006253 5.1e-32 142.5 277 59.9
MSTRG.7412 Avicennia marina HOM05D005280 ORTHO05D006253 7.4e-31 138.7 92 64.1
AagrBONN_evm.TU.Sc2ySwM_117.3414 Anthoceros agrestis HOM05D005280 ORTHO05D006253 2.0e-28 130.6 264 61.4
AUR62014277 Chenopodium quinoa HOM05D005280 ORTHO05D006253 4.5e-28 129.4 94 61.7
Pp3c15_2410 Physcomitrium patens HOM05D005280 ORTHO05D006253 7.7e-28 128.6 277 57.0
AUR62034161 Chenopodium quinoa HOM05D005280 ORTHO05D006253 3.2e-26 123.2 215 45.1
Zm00001eb238680 Zea mays HOM05D005280 ORTHO05D006253 3.2e-26 123.2 96 57.3
MBI16_g15539_MAGBIO Magnolia biondii HOM05D005280 ORTHO05D006253 9.4e-26 121.7 260 30.8
Cre17.g730200 Chlamydomonas reinhardtii HOM05D005280 ORTHO05D006253 4.7e-25 119.4 97 53.6
Aqoxy1G02047 Aquilegia oxysepala HOM05D005280 ORTHO05D006253 3.3e-23 113.2 82 62.2
MBI16_g15538_MAGBIO Magnolia biondii HOM05D005280 ORTHO05D006253 1.3e-19 101.3 260 26.9
A08p25250 Brassica napus HOM05D005280 ORTHO05D006253 1.7e-19 100.9 103 46.6
MCO15G120 Micromonas commoda HOM05D005280 ORTHO05D006253 4.1e-13 79.7 66 53.0
Hma1.2p1_1912F.1_g307330 Hydrangea macrophylla HOM05D019969 ORTHO05D019446 2.1e-09 67.4 78 46.2
Aqoxy1G02046 Aquilegia oxysepala HOM05D019969 ORTHO05D019446 1.4e-08 64.7 74 44.6
MBI16_g13364_MAGBIO Magnolia biondii HOM05D005280 ORTHO05D006253 1.4e-08 64.7 78 41.0
MBI16_g04072_MAGBIO Magnolia biondii HOM05D005280 ORTHO05D006253 2.3e-08 63.9 78 43.6
FAN14G0286 Fragaria x ananassa HOM05D005280 ORTHO05D019446 3.0e-08 63.5 111 36.0
arahy.Tifrunner.gnm1.ann1.HIJE33 Arachis hypogaea HOM05D005280 ORTHO05D006253 6.8e-08 62.4 61 49.2
VMungo1383G1864 Vigna mungo HOM05D005280 ORTHO05D006253 1.2e-07 61.6 53 58.5
ATR0706G060 Amborella trichopoda HOM05D005280 ORTHO05D006253 2.6e-07 60.5 59 47.5
MBI06_g08594_MAGBIO Magnolia biondii HOM05D038649 ORTHO05D006253 9.8e-07 58.5 76 36.8
Dinv41375 Davidia involucrata HOM05D000140 ORTHO05D000087 2.8e-06 57.0 74 45.9
VMungo0331G0944 Vigna mungo HOM05D005280 ORTHO05D006253 4.8e-06 56.2 35 65.7


User provided reference genes

Program Settings