Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Sabra11G0034500 Salix brachista HOM05D007576 ORTHO05D009576 0.0e+00 1446.0 750 100.0
Potri.011G050600 Populus trichocarpa HOM05D007576 ORTHO05D009576 0.0e+00 1336.2 753 92.6
Manes.17G043700 Manihot esculenta HOM05D007576 ORTHO05D009576 2.5e-269 932.2 753 67.9
Cfa000420 Carpinus fangiana HOM05D007576 ORTHO05D009576 1.2e-237 827.0 754 60.9
QL05p039732 Quercus lobata HOM05D007576 ORTHO05D009576 1.6e-231 806.6 753 60.6
Duzib192G1068 Durio zibethinus HOM05D007576 ORTHO05D009576 1.0e-225 787.3 753 59.4
CiPaw.09G057800 Carya illinoinensis HOM05D007576 ORTHO05D009576 1.2e-223 780.4 749 58.2
Thecc.06G190300 Theobroma cacao HOM05D007576 ORTHO05D009576 1.0e-217 760.8 750 58.3
Ciclev10014397m.g Citrus clementina HOM05D007576 ORTHO05D009576 2.8e-215 752.7 757 58.5
COL.COLO4_31497 Corchorus olitorius HOM05D007576 ORTHO05D009576 4.7e-215 751.9 746 57.2
TWI38G1553 Tripterygium wilfordii HOM05D007576 ORTHO05D009576 4.7e-215 751.9 756 58.3
CSS0005805 Camellia sinensis var. sinensis HOM05D007576 ORTHO05D009576 1.9e-211 740.0 743 56.4
Dinv07540 Davidia involucrata HOM05D007576 ORTHO05D009576 5.0e-209 731.9 766 56.7
MD10G1296200 Malus domestica HOM05D007576 ORTHO05D009576 4.7e-207 725.3 751 55.3
MD05G1314800 Malus domestica HOM05D007576 ORTHO05D009576 7.3e-200 701.4 754 54.8
Gohir.A06G126300 Gossypium hirsutum HOM05D007576 ORTHO05D009576 6.8e-198 694.9 753 53.8
FAN16G1901 Fragaria x ananassa HOM05D007576 ORTHO05D009576 8.9e-198 694.5 762 53.7
FAN21G0504 Fragaria x ananassa HOM05D007576 ORTHO05D009576 8.9e-198 694.5 762 53.5
FAN25G3788 Fragaria x ananassa HOM05D007576 ORTHO05D009576 8.9e-198 694.5 757 53.8
FAN11G2000 Fragaria x ananassa HOM05D007576 ORTHO05D009576 1.2e-197 694.1 757 53.6
Gorai.010G153000 Gossypium raimondii HOM05D007576 ORTHO05D009576 6.4e-196 688.3 751 53.7
Gohir.D06G131100 Gossypium hirsutum HOM05D007576 ORTHO05D009576 1.9e-195 686.8 751 53.7
FvH4_3g04910 Fragaria vesca HOM05D007576 ORTHO05D009576 3.5e-194 682.6 755 53.4
Cpa.g.sc1598.2 Carica papaya HOM05D007576 ORTHO05D009576 6.6e-193 678.3 704 55.4
RcHm_v2.0_Chr5g0008071 Rosa chinensis HOM05D007576 ORTHO05D009576 1.9e-192 676.8 760 52.8
Glyma.05G009500 Glycine max HOM05D007576 ORTHO05D009576 9.6e-192 674.5 763 52.9
RhsimUnG0044800 Rhododendron simsii HOM05D007576 ORTHO05D009576 9.6e-192 674.5 747 51.4
Prupe.4G044400 Prunus persica HOM05D007576 ORTHO05D009576 1.2e-191 674.1 751 52.6
Haze_06496 Corylus avellana HOM05D007576 ORTHO05D009576 6.2e-191 671.8 661 57.5
Phvul.003G161900 Phaseolus vulgaris HOM05D007576 ORTHO05D009576 3.4e-189 666.0 756 51.3
MELO3C007295.2 Cucumis melo HOM05D007576 ORTHO05D009576 2.4e-187 659.8 684 54.2
CANSAT35G0220 Cannabis sativa HOM05D007576 ORTHO05D009576 6.0e-186 655.2 763 52.8
ClCG01G022850 Citrullus lanatus HOM05D007576 ORTHO05D009576 2.3e-185 653.3 731 52.3
Lalb_Chr13g0302021 Lupinus albus HOM05D007576 ORTHO05D009576 3.0e-185 652.9 750 51.3
CsaV3_6G050020 Cucumis sativus L. HOM05D007576 ORTHO05D009576 7.3e-184 648.3 684 53.8
arahy.Tifrunner.gnm1.ann1.TJT9YV Arachis hypogaea HOM05D007576 ORTHO05D009576 4.8e-183 645.6 756 51.1
Glyma.17G117500 Glycine max HOM05D007576 ORTHO05D009576 1.2e-181 641.0 762 51.4
VMungo1215G0476 Vigna mungo HOM05D007576 ORTHO05D009576 7.6e-181 638.3 760 49.9
arahy.Tifrunner.gnm1.ann1.TJX0PA Arachis hypogaea HOM05D007576 ORTHO05D009576 3.8e-180 636.0 699 52.6
Sed0017500 Sechium edule HOM05D007576 ORTHO05D009576 2.4e-179 633.3 681 52.4
Nn1g06600 Nelumbo nucifera HOM05D007576 ORTHO05D009576 3.5e-178 629.4 788 48.7
Lj4g0015142 Lotus japonicus HOM05D007576 ORTHO05D009576 2.5e-176 623.2 749 49.0
Ca_21702_v3 Cicer arietinum L. HOM05D007576 ORTHO05D009576 9.0e-174 614.8 739 49.8
Lj1A1207T83 Lonicera japonica HOM05D007576 ORTHO05D009576 3.4e-173 612.8 725 51.6
Eucgr.E03347 Eucalyptus grandis HOM05D007576 ORTHO05D009576 6.4e-172 608.6 698 50.7
Medtr4g113740 Medicago truncatula HOM05D007576 ORTHO05D009576 4.6e-170 602.4 754 48.5
Psat4g041840 Pisum sativum HOM05D007576 ORTHO05D009576 1.0e-169 601.3 738 49.1
Hund21235 Selenicereus undatus HOM05D007576 ORTHO05D009576 1.9e-168 597.0 755 48.6
PGR042G0577 Punica granatum HOM05D007576 ORTHO05D009576 1.4e-163 580.9 756 48.8
Nitab4.5_0001357g0010 Nicotiana tabacum HOM05D007576 ORTHO05D009576 1.0e-161 574.7 748 48.9
Nitab4.5_0009493g0040 Nicotiana tabacum HOM05D007576 ORTHO05D009576 6.3e-159 565.5 742 47.8
EL10Ac8g20358 Beta vulgaris HOM05D007576 ORTHO05D009576 6.9e-158 562.0 739 46.5
Aqoxy1G02531 Aquilegia oxysepala HOM05D007576 ORTHO05D009576 2.6e-157 560.1 772 45.5
Aqoxy1G02534 Aquilegia oxysepala HOM05D007576 ORTHO05D009576 2.6e-157 560.1 772 45.5
Sc05g0007790 Simmondsia chinensis HOM05D007576 ORTHO05D009576 4.5e-157 559.3 773 45.7
AUR62014798 Chenopodium quinoa HOM05D007576 ORTHO05D009576 1.1e-155 554.7 734 47.4
PGSC0003DMG400022439 Solanum tuberosum HOM05D007576 ORTHO05D009576 9.3e-155 551.6 753 45.4
CAN.G1164.10 Capsicum annuum HOM05D007576 ORTHO05D009576 6.1e-154 548.9 747 46.3
Sopen02g023320 Solanum pennellii HOM05D007576 ORTHO05D009576 7.9e-154 548.5 753 45.7
AUR62016989 Chenopodium quinoa HOM05D007576 ORTHO05D009576 1.0e-153 548.1 759 45.8
DCAR_008044 Daucus carota HOM05D007576 ORTHO05D009576 4.1e-150 536.2 686 48.0
PSO675G5421 Papaver somniferum HOM05D007576 ORTHO05D009576 1.4e-145 521.2 798 44.1
Ah.14g089350 Amaranthus hybridus HOM05D007576 ORTHO05D009576 4.4e-144 516.2 736 45.4
MSTRG.15916 Avicennia marina HOM05D007576 ORTHO05D009576 7.4e-144 515.4 738 44.0
SGA_v2.0_scaffold7G03972 Striga asiatica HOM05D007576 ORTHO05D009576 7.4e-144 515.4 746 45.6
Atru.chr10.1919 Acer truncatum HOM05D007576 ORTHO05D009576 1.7e-143 514.2 551 56.3
Cc02_g13130 Coffea canephora HOM05D007576 ORTHO05D009576 3.8e-140 503.1 699 44.9
MBI18_g17005_MAGBIO Magnolia biondii HOM05D007576 ORTHO05D009576 3.9e-137 493.0 823 43.0
SalBow8G3709 Salvia bowleyana HOM05D007576 ORTHO05D009576 2.2e-135 487.3 771 42.8
HanXRQChr16g0518181 Helianthus annuus HOM05D007576 ORTHO05D009576 1.1e-134 485.0 694 43.7
Migut.M01192 Erythranthe guttata HOM05D007576 ORTHO05D009576 4.7e-130 469.5 757 42.9
Lsat_1_v5_gn_4_52541 Lactuca sativa HOM05D007576 ORTHO05D009576 6.1e-130 469.2 731 42.8
Peaxi162Scf00947g00422 Petunia axillaris HOM05D007576 ORTHO05D009576 6.3e-127 459.1 593 47.2
ECA234G2395 Erigeron canadensis HOM05D007576 ORTHO05D009576 2.5e-123 447.2 758 41.4
CSS0010553 Camellia sinensis var. sinensis HOM05D007576 ORTHO05D009576 7.0e-118 429.1 732 40.4
GSVIVG01002036001 Vitis vinifera HOM05D007576 ORTHO05D009576 9.1e-118 428.7 301 74.8
PSO541G6317 Papaver somniferum HOM05D007576 ORTHO05D009576 2.1e-106 391.0 396 56.6
TPR.G10703 Trifolium pratense HOM05D007576 ORTHO05D009576 8.9e-105 385.6 332 63.6
HPP92_014806 Vanilla planifolia HOM05D007576 ORTHO05D009576 9.2e-102 375.6 735 36.7
Ciclev10008775m.g Citrus clementina HOM05D007576 ORTHO05D009576 1.2e-93 348.6 385 54.8
Oeu038219.1 Olea europaea HOM05D007576 ORTHO05D009576 1.0e-92 345.5 241 74.7
CDE01G0107 Ceratophyllum demersum HOM05D007576 ORTHO05D009576 6.6e-92 342.8 628 40.6
ATR0680G038 Amborella trichopoda HOM05D007576 ORTHO05D009576 5.2e-89 333.2 566 41.2
Os06g0731700 Oryza sativa ssp. japonica HOM05D007576 ORTHO05D009576 1.4e-81 308.5 329 49.5
Zm00001eb229030 Zea mays HOM05D007576 ORTHO05D009576 1.3e-79 302.0 264 57.6
Mapoly0181s0007 Marchantia polymorpha HOM05D007576 ORTHO05D009576 2.4e-57 228.0 249 49.8
Pp3c11_25570 Physcomitrium patens HOM05D007576 ORTHO05D009576 4.9e-55 220.3 253 48.6
Atru.chr10.1928 Acer truncatum HOM05D007576 ORTHO05D009576 4.6e-53 213.8 344 42.2
Duzib235G0673 Durio zibethinus HOM05D007576 ORTHO05D009576 5.6e-51 206.8 158 67.7
Ciclev10009735m.g Citrus clementina HOM05D007576 ORTHO05D009576 2.4e-49 201.4 157 68.2
Lj2g0021670 Lotus japonicus HOM05D007576 ORTHO05D009576 1.0e-39 169.5 201 48.3
Solyc02g078470.4 Solanum lycopersicum HOM05D007576 ORTHO05D009576 1.7e-31 142.1 100 70.0
CBR_g49326 Chara braunii HOM05D007576 ORTHO05D000002 2.6e-27 128.3 186 39.8
Atru.chr10.1920 Acer truncatum HOM05D007576 ORTHO05D009576 1.3e-18 99.4 78 67.9
MELO3C003884.2 Cucumis melo HOM05D007576 ORTHO05D009576 2.2e-18 98.6 160 42.5
ECA247G2871 Erigeron canadensis HOM05D000526 ORTHO05D000956 3.7e-18 97.8 80 61.2
SEGI_32076 Sequoiadendron giganteum HOM05D007576 ORTHO05D009576 5.3e-17 94.0 87 50.6
Cre13.g589167 Chlamydomonas reinhardtii HOM05D007576 ORTHO05D009576 3.7e-10 71.2 257 26.1
QL05p034837 Quercus lobata HOM05D007576 ORTHO05D009576 1.5e-06 59.3 44 63.6


User provided reference genes

Program Settings