Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Sabra11G0018600 Salix brachista HOM05D000247 ORTHO05D000288 4.7e-91 337.8 166 100.0
Sabra11G0024500 Salix brachista HOM05D000247 ORTHO05D000288 4.7e-91 337.8 166 100.0
Potri.004G031700 Populus trichocarpa HOM05D000247 ORTHO05D000288 1.3e-21 107.1 126 53.2
QL05p077133 Quercus lobata HOM05D000247 ORTHO05D000288 8.7e-21 104.4 119 50.4
QL93p0073_1220 Quercus lobata HOM05D000247 ORTHO05D000288 8.7e-21 104.4 119 50.4
PGR004G1780 Punica granatum HOM05D000247 ORTHO05D000288 5.7e-20 101.7 126 49.2
Sabra04G0018000 Salix brachista HOM05D000247 ORTHO05D000288 9.7e-20 100.9 126 51.6
Cfa016411 Carpinus fangiana HOM05D000247 ORTHO05D000288 2.8e-19 99.4 127 48.8
Manes.16G017200 Manihot esculenta HOM05D000247 ORTHO05D000288 6.3e-19 98.2 126 48.4
TWI38G1486 Tripterygium wilfordii HOM05D000247 ORTHO05D000288 1.4e-18 97.1 126 48.4
Ciclev10017174m.g Citrus clementina HOM05D000247 ORTHO05D000288 3.1e-18 95.9 119 47.9
Haze_06688 Corylus avellana HOM05D000141 ORTHO05D001968 4.1e-18 95.5 119 47.9
CSS0035900 Camellia sinensis var. sinensis HOM05D000247 ORTHO05D000288 5.3e-18 95.1 126 47.6
CSS0044574 Camellia sinensis var. sinensis HOM05D000247 ORTHO05D000288 5.3e-18 95.1 126 47.6
Dinv17847 Davidia involucrata HOM05D000247 ORTHO05D000288 5.3e-18 95.1 126 47.6
PGR004G0688 Punica granatum HOM05D000247 ORTHO05D000288 9.0e-18 94.4 118 49.2
GSVIVG01007337001 Vitis vinifera HOM05D000247 ORTHO05D000288 1.2e-17 94.0 127 45.7
COL.COLO4_31688 Corchorus olitorius HOM05D000247 ORTHO05D000288 1.5e-17 93.6 126 46.0
Duzib192G0716 Durio zibethinus HOM05D000247 ORTHO05D000288 1.5e-17 93.6 126 46.8
VMungo0540G0926 Vigna mungo HOM05D000247 ORTHO05D000288 2.0e-17 93.2 125 46.4
Phvul.006G196500 Phaseolus vulgaris HOM05D000247 ORTHO05D000288 4.5e-17 92.0 125 45.6
Lj6g0021886 Lotus japonicus HOM05D000247 ORTHO05D000288 5.9e-17 91.7 125 47.2
Lalb_Chr18g0060121 Lupinus albus HOM05D000247 ORTHO05D000288 5.9e-17 91.7 119 48.7
arahy.Tifrunner.gnm1.ann1.04AI4E Arachis hypogaea HOM05D000247 ORTHO05D000288 7.7e-17 91.3 146 41.8
arahy.Tifrunner.gnm1.ann1.W0U6J5 Arachis hypogaea HOM05D000247 ORTHO05D000288 7.7e-17 91.3 146 41.8
Glyma.15G063100 Glycine max HOM05D000247 ORTHO05D000288 7.7e-17 91.3 125 44.0
CiPaw.09G080500 Carya illinoinensis HOM05D000247 ORTHO05D000288 1.0e-16 90.9 122 47.5
Gohir.A05G167700 Gossypium hirsutum HOM05D000247 ORTHO05D000288 1.7e-16 90.1 119 46.2
Hma1.2p1_1682F.1_g297340 Hydrangea macrophylla HOM05D000247 ORTHO05D000288 1.7e-16 90.1 119 42.9
Thecc.06G208700 Theobroma cacao HOM05D000247 ORTHO05D000288 1.7e-16 90.1 126 46.0
Cpa.g.sc81.10 Carica papaya HOM05D000247 ORTHO05D000288 2.2e-16 89.7 126 45.2
CiPaw.10G066700 Carya illinoinensis HOM05D000247 ORTHO05D000288 2.2e-16 89.7 118 45.8
Medtr2g010750 Medicago truncatula HOM05D000247 ORTHO05D000288 2.9e-16 89.4 125 45.6
CANSAT56G0019 Cannabis sativa HOM05D000247 ORTHO05D000288 6.5e-16 88.2 118 45.8
RcHm_v2.0_Chr5g0004481 Rosa chinensis HOM05D000247 ORTHO05D000288 6.5e-16 88.2 125 43.2
Rhsim02G0114900 Rhododendron simsii HOM05D000247 ORTHO05D000288 1.1e-15 87.4 118 44.9
Dinv18939 Davidia involucrata HOM05D000247 ORTHO05D000288 1.4e-15 87.0 126 44.4
TPR.G32664 Trifolium pratense HOM05D000247 ORTHO05D000288 1.4e-15 87.0 125 44.8
Potri.011G031100 Populus trichocarpa HOM05D000247 ORTHO05D000288 1.9e-15 86.7 75 57.3
Dinv22313 Davidia involucrata HOM05D000247 ORTHO05D000288 2.5e-15 86.3 125 41.6
Gohir.D05G170700 Gossypium hirsutum HOM05D000247 ORTHO05D000288 3.2e-15 85.9 119 44.5
Manes.15G077200 Manihot esculenta HOM05D000247 ORTHO05D000288 3.2e-15 85.9 113 44.2
MELO3C002508.2 Cucumis melo HOM05D000247 ORTHO05D000288 4.2e-15 85.5 113 43.4
Gorai.009G175900 Gossypium raimondii HOM05D000247 ORTHO05D000288 4.2e-15 85.5 119 43.7
Ca_00205_v3 Cicer arietinum L. HOM05D000247 ORTHO05D000288 5.5e-15 85.1 125 44.0
TAR624G0987 Trochodendron aralioides HOM05D000247 ORTHO05D000288 5.5e-15 85.1 113 44.2
Cc02_g11760 Coffea canephora HOM05D000247 ORTHO05D000288 7.2e-15 84.7 126 43.7
MD10G1311900 Malus domestica HOM05D000247 ORTHO05D000288 7.2e-15 84.7 124 41.1
Prupe.4G029100 Prunus persica HOM05D000247 ORTHO05D000288 7.2e-15 84.7 125 41.6
Manes.03G122050 Manihot esculenta HOM05D000247 ORTHO05D000288 1.2e-14 84.0 113 43.4
FvH4_3g02911 Fragaria vesca HOM05D000247 ORTHO05D000288 1.6e-14 83.6 127 40.9
Glyma.13G251200 Glycine max HOM05D000247 ORTHO05D000288 2.1e-14 83.2 119 42.9
MBI18_g26663_MAGBIO Magnolia biondii HOM05D000247 ORTHO05D000288 2.7e-14 82.8 109 46.8
Duzib170G0151 Durio zibethinus HOM05D000247 ORTHO05D000288 4.6e-14 82.0 118 41.5
COL.COLO4_09557 Corchorus olitorius HOM05D000247 ORTHO05D000288 6.1e-14 81.6 121 39.7
Eucgr.D00853 Eucalyptus grandis HOM05D000247 ORTHO05D000288 6.1e-14 81.6 135 42.2
Thecc.07G055000 Theobroma cacao HOM05D000247 ORTHO05D000288 7.9e-14 81.3 113 43.4
Phvul.005G090900 Phaseolus vulgaris HOM05D000247 ORTHO05D000288 1.0e-13 80.9 116 39.7
Actinidia11833 Actinidia chinensis HOM05D000247 ORTHO05D000288 1.4e-13 80.5 102 47.1
vmacro15839 Vaccinium macrocarpon HOM05D000247 ORTHO05D000288 1.4e-13 80.5 94 47.9
Duzib213G0045 Durio zibethinus HOM05D000247 ORTHO05D000288 1.8e-13 80.1 113 43.4
C08p48160 Brassica napus HOM05D000247 ORTHO05D000288 2.3e-13 79.7 118 41.5
THA.LOC104809517 Tarenaya hassleriana HOM05D000247 ORTHO05D000288 3.9e-13 79.0 119 41.2
Sc17g0006940 Simmondsia chinensis HOM05D000247 ORTHO05D000288 5.1e-13 78.6 76 60.5
BcaC07g41775 Brassica carinata HOM05D000247 ORTHO05D000288 6.7e-13 78.2 120 43.3
BolC8t52349H Brassica oleracea HOM05D000247 ORTHO05D000288 6.7e-13 78.2 120 43.3
Cpa.g.sc97.79 Carica papaya HOM05D000247 ORTHO05D000288 6.7e-13 78.2 109 44.0
CsaV3_1G011310 Cucumis sativus L. HOM05D000247 ORTHO05D000288 6.7e-13 78.2 113 41.6
Gohir.A01G073900 Gossypium hirsutum HOM05D000247 ORTHO05D000288 6.7e-13 78.2 117 41.0
Gohir.D01G060400 Gossypium hirsutum HOM05D000247 ORTHO05D000288 6.7e-13 78.2 117 40.2
Psat5g249480 Pisum sativum HOM05D000247 ORTHO05D000288 6.7e-13 78.2 135 37.8
Sp1g10150 Schrenkiella parvula HOM05D000247 ORTHO05D000288 6.7e-13 78.2 122 41.8
Nitab4.5_0009680g0020 Nicotiana tabacum HOM05D000247 ORTHO05D000288 8.8e-13 77.8 127 41.7
Aqoxy1G03798 Aquilegia oxysepala HOM05D000247 ORTHO05D000288 1.1e-12 77.4 113 40.7
Ciclev10009896m.g Citrus clementina HOM05D000247 ORTHO05D000288 1.1e-12 77.4 113 40.7
Gorai.002G081800 Gossypium raimondii HOM05D000247 ORTHO05D000288 1.1e-12 77.4 117 40.2
Sed0000067 Sechium edule HOM05D000247 ORTHO05D000288 1.1e-12 77.4 111 41.4
BraA09t41790Z Brassica rapa HOM05D000247 ORTHO05D000288 1.5e-12 77.0 120 42.5
Dinv03941 Davidia involucrata HOM05D000247 ORTHO05D000288 1.5e-12 77.0 118 39.0
Potri.001G416500 Populus trichocarpa HOM05D000247 ORTHO05D000288 1.5e-12 77.0 119 39.5
Nitab4.5_0002345g0090 Nicotiana tabacum HOM05D000247 ORTHO05D000288 2.5e-12 76.3 125 39.2
CSS0037772 Camellia sinensis var. sinensis HOM05D000247 ORTHO05D000288 3.3e-12 75.9 81 54.3
Peaxi162Scf00678g00047 Petunia axillaris HOM05D000247 ORTHO05D000288 3.3e-12 75.9 126 39.7
EL10Ac8g19917 Beta vulgaris HOM05D000247 ORTHO05D000288 4.3e-12 75.5 120 40.8
GSVIVG01014587001 Vitis vinifera HOM05D000247 ORTHO05D000288 5.7e-12 75.1 117 40.2
Nn1g06961 Nelumbo nucifera HOM05D000247 ORTHO05D000288 7.4e-12 74.7 137 40.9
PSO832G0793 Papaver somniferum HOM05D000247 ORTHO05D000288 7.4e-12 74.7 117 41.0
Actinidia05128 Actinidia chinensis HOM05D000247 ORTHO05D000288 9.7e-12 74.3 109 42.2
PSO210G3616 Papaver somniferum HOM05D000247 ORTHO05D000288 9.7e-12 74.3 117 41.0
VMungo1080G1163 Vigna mungo HOM05D000247 ORTHO05D000288 9.7e-12 74.3 118 37.3
Ah.14g088470 Amaranthus hybridus HOM05D000141 ORTHO05D001968 1.3e-11 73.9 121 39.7
MD05G1336400 Malus domestica HOM05D000247 ORTHO05D000288 1.3e-11 73.9 124 37.1
BcaB08g37399 Brassica carinata HOM05D000247 ORTHO05D000288 1.7e-11 73.6 120 41.7
BcaC07g41779 Brassica carinata HOM05D000247 ORTHO05D000288 1.7e-11 73.6 120 41.7
Eucgr.L01943 Eucalyptus grandis HOM05D000247 ORTHO05D000288 1.7e-11 73.6 81 53.1
PGSC0003DMG400021716 Solanum tuberosum HOM05D000247 ORTHO05D000288 1.7e-11 73.6 117 42.7
CAN.G569.62 Capsicum annuum HOM05D000247 ORTHO05D000288 2.2e-11 73.2 117 42.7
Glyma.12G215000 Glycine max HOM05D000247 ORTHO05D000288 2.2e-11 73.2 122 36.1
Lalb_Chr01g0006131 Lupinus albus HOM05D000247 ORTHO05D000288 2.2e-11 73.2 113 44.2
Thhalv10009112m.g Eutrema salsugineum HOM05D000247 ORTHO05D000288 3.7e-11 72.4 120 41.7
Medtr2g082590 Medicago truncatula HOM05D000247 ORTHO05D000288 3.7e-11 72.4 133 36.8
Glyma.13G286600 Glycine max HOM05D000247 ORTHO05D000288 4.8e-11 72.0 118 37.3
Lj3g0009656 Lotus japonicus HOM05D000247 ORTHO05D000288 6.3e-11 71.6 114 43.0
AL1G22630 Arabidopsis lyrata HOM05D000247 ORTHO05D000288 8.2e-11 71.2 111 42.3
Aa31LG1G3230 Aethionema arabicum HOM05D000247 ORTHO05D000288 1.1e-10 70.9 120 38.3
Ca_18843_v3 Cicer arietinum L. HOM05D000247 ORTHO05D000288 1.1e-10 70.9 110 40.9
Hund23533 Selenicereus undatus HOM05D000247 ORTHO05D000288 1.4e-10 70.5 163 34.4
Solyc02g079960.3 Solanum lycopersicum HOM05D000247 ORTHO05D000288 1.4e-10 70.5 125 40.8
CARHR011800 Cardamine hirsuta HOM05D000247 ORTHO05D000288 1.8e-10 70.1 111 40.5
Carub.0001s1114 Capsella rubella HOM05D000247 ORTHO05D000288 2.4e-10 69.7 111 41.4
AT1G11530 Arabidopsis thaliana HOM05D000247 ORTHO05D000288 5.3e-10 68.6 111 41.4
Nitab4.5_0003738g0020 Nicotiana tabacum HOM05D000247 ORTHO05D000288 6.9e-10 68.2 81 50.6
HanXRQChr05g0130751 Helianthus annuus HOM05D000247 ORTHO05D000288 9.1e-10 67.8 125 33.6
Sopen02g024710 Solanum pennellii HOM05D000247 ORTHO05D000288 9.1e-10 67.8 117 41.0
HPP92_005902 Vanilla planifolia HOM05D000247 ORTHO05D000288 9.1e-10 67.8 114 33.3
Phvul.011G141400 Phaseolus vulgaris HOM05D000247 ORTHO05D000288 1.2e-09 67.4 94 43.6
Lj3g0003664 Lotus japonicus HOM05D000247 ORTHO05D000288 1.5e-09 67.0 135 37.8
FAN25G3292 Fragaria x ananassa HOM05D000247 ORTHO05D000288 2.0e-09 66.6 77 46.8
Glyma.12G136400 Glycine max HOM05D000247 ORTHO05D000288 2.0e-09 66.6 98 41.8
Lalb_Chr22g0357091 Lupinus albus HOM05D000247 ORTHO05D000288 2.0e-09 66.6 121 38.0
Atru.chr2.3193 Acer truncatum HOM05D000247 ORTHO05D000288 2.6e-09 66.2 131 36.6
Medtr4g081380 Medicago truncatula HOM05D000247 ORTHO05D000288 2.6e-09 66.2 114 39.5
Peaxi162Scf00082g01211 Petunia axillaris HOM05D000247 ORTHO05D000288 2.6e-09 66.2 101 40.6
vmacro11771 Vaccinium macrocarpon HOM05D000247 ORTHO05D000288 2.6e-09 66.2 94 41.5
Oeu013858.2 Olea europaea HOM05D000141 ORTHO05D001968 3.4e-09 65.9 111 37.8
ATR0762G027 Amborella trichopoda HOM05D000247 ORTHO05D000288 5.9e-09 65.1 76 48.7
ECA236G1853 Erigeron canadensis HOM05D001139 ORTHO05D000936 5.9e-09 65.1 75 48.0
Glyma.06G266700 Glycine max HOM05D000247 ORTHO05D000288 5.9e-09 65.1 98 41.8
TPR.G25899 Trifolium pratense HOM05D000247 ORTHO05D000288 7.7e-09 64.7 114 38.6
MELO3C018122.2 Cucumis melo HOM05D000247 ORTHO05D000288 1.0e-08 64.3 109 39.4
arahy.Tifrunner.gnm1.ann1.7ZYB2E Arachis hypogaea HOM05D000247 ORTHO05D000288 1.3e-08 63.9 124 36.3
AUR62014615 Chenopodium quinoa HOM05D000247 ORTHO05D000288 1.3e-08 63.9 80 46.2
Oeu013857.1 Olea europaea HOM05D000247 ORTHO05D000288 1.7e-08 63.5 94 40.4
Psat7g122160 Pisum sativum HOM05D000247 ORTHO05D000288 2.2e-08 63.2 120 35.8
SGA_v2.0_scaffold9G05024 Striga asiatica HOM05D000247 ORTHO05D000288 2.9e-08 62.8 57 54.4
AUR62012586 Chenopodium quinoa HOM05D000247 ORTHO05D000288 6.5e-08 61.6 80 45.0
EL10Ac4g07987 Beta vulgaris HOM05D000247 ORTHO05D000288 8.5e-08 61.2 74 47.3
Sed0010392 Sechium edule HOM05D000247 ORTHO05D000288 8.5e-08 61.2 104 41.3
CDE01G0748 Ceratophyllum demersum HOM05D000247 ORTHO05D000288 1.4e-07 60.5 94 38.3
ClCG05G014810 Citrullus lanatus HOM05D000247 ORTHO05D000288 1.4e-07 60.5 94 41.5
Migut.H01863 Erythranthe guttata HOM05D000247 ORTHO05D000288 1.4e-07 60.5 95 35.8
Lsat_1_v5_gn_7_18261 Lactuca sativa HOM05D000141 ORTHO05D001968 1.9e-07 60.1 131 33.6
arahy.Tifrunner.gnm1.ann1.I0I8XZ Arachis hypogaea HOM05D000247 ORTHO05D000288 4.2e-07 58.9 112 37.5
Sabra11G0119100 Salix brachista HOM05D000247 ORTHO05D000288 4.2e-07 58.9 69 44.9
DCAR_004175 Daucus carota HOM05D000247 ORTHO05D000288 7.2e-07 58.2 108 34.3
Actinidia05127 Actinidia chinensis HOM05D000247 ORTHO05D000288 1.6e-06 57.0 126 32.5
Os04g0629500 Oryza sativa ssp. japonica HOM05D000247 ORTHO05D000288 2.7e-06 56.2 100 36.0
MSTRG.12952 Avicennia marina HOM05D000247 ORTHO05D000288 3.6e-06 55.8 99 34.3


User provided reference genes

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