Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Sabra10G0198900 Salix brachista HOM05D005289 ORTHO05D006346 4.8e-81 304.7 179 100.0
Potri.010G255500 Populus trichocarpa HOM05D005289 ORTHO05D006346 8.2e-49 197.6 185 75.1
Potri.008G002200 Populus trichocarpa HOM05D005289 ORTHO05D006346 6.5e-38 161.4 182 58.2
Sabra08G0000100 Salix brachista HOM05D005289 ORTHO05D006346 2.7e-36 156.0 182 61.0
Prupe.1G352600 Prunus persica HOM05D005289 ORTHO05D006346 7.4e-26 121.3 121 53.7
Manes.16G000200 Manihot esculenta HOM05D005289 ORTHO05D006346 1.3e-25 120.6 122 54.9
CiPaw.16G000100 Carya illinoinensis HOM05D005289 ORTHO05D006346 2.2e-25 119.8 110 58.2
MD13G1000200 Malus domestica HOM05D005289 ORTHO05D006346 6.3e-25 118.2 113 55.8
MD16G1005600 Malus domestica HOM05D005289 ORTHO05D006346 1.4e-24 117.1 105 58.1
RcHm_v2.0_Chr4g0447301 Rosa chinensis HOM05D005289 ORTHO05D006346 1.4e-24 117.1 110 54.5
FvH4_4g37381 Fragaria vesca HOM05D005289 ORTHO05D006346 5.3e-24 115.2 110 52.7
FAN17G1203 Fragaria x ananassa HOM05D005289 ORTHO05D006346 5.3e-24 115.2 110 52.7
Manes.16G039900 Manihot esculenta HOM05D005289 ORTHO05D006346 5.3e-24 115.2 120 57.5
vmacro13683 Vaccinium macrocarpon HOM05D005289 ORTHO05D006346 5.3e-24 115.2 111 56.8
FAN07G0133 Fragaria x ananassa HOM05D005289 ORTHO05D006346 9.1e-24 114.4 110 52.7
FAN07G0378 Fragaria x ananassa HOM05D005289 ORTHO05D006346 9.1e-24 114.4 110 52.7
Manes.16G040000 Manihot esculenta HOM05D005289 ORTHO05D006346 9.1e-24 114.4 122 55.7
TAR376G0259 Trochodendron aralioides HOM05D005289 ORTHO05D006346 9.1e-24 114.4 111 50.5
Dinv09331 Davidia involucrata HOM05D005289 ORTHO05D006346 1.6e-23 113.6 81 67.9
Lj2g0002318 Lotus japonicus HOM05D005289 ORTHO05D006346 1.6e-23 113.6 113 58.4
DCAR_006352 Daucus carota HOM05D005289 ORTHO05D006346 2.0e-23 113.2 86 64.0
Duzib248G0326 Durio zibethinus HOM05D005289 ORTHO05D006346 2.6e-23 112.8 79 70.9
Gohir.A03G168400 Gossypium hirsutum HOM05D005289 ORTHO05D006346 3.5e-23 112.5 115 52.2
CANSAT78G0451 Cannabis sativa HOM05D005289 ORTHO05D006346 4.5e-23 112.1 79 68.4
Ciclev10017019m.g Citrus clementina HOM05D005289 ORTHO05D006346 5.9e-23 111.7 116 53.4
RhsimUnG0144200 Rhododendron simsii HOM05D005289 ORTHO05D006346 5.9e-23 111.7 84 65.5
THA.LOC104800596 Tarenaya hassleriana HOM05D005289 ORTHO05D006346 5.9e-23 111.7 116 52.6
Rhsim07G0056900 Rhododendron simsii HOM05D005289 ORTHO05D006346 7.7e-23 111.3 84 65.5
Atru.chr11.6 Acer truncatum HOM05D005289 ORTHO05D006346 1.0e-22 110.9 122 54.1
Dinv43423 Davidia involucrata HOM05D005289 ORTHO05D006346 1.0e-22 110.9 81 66.7
Gohir.D02G191500 Gossypium hirsutum HOM05D005289 ORTHO05D006346 1.0e-22 110.9 115 51.3
Gorai.005G214300 Gossypium raimondii HOM05D005289 ORTHO05D006346 1.0e-22 110.9 115 51.3
PSO063G1455 Papaver somniferum HOM05D005289 ORTHO05D006346 1.0e-22 110.9 112 48.2
QL01p000104 Quercus lobata HOM05D005289 ORTHO05D006346 1.3e-22 110.5 122 51.6
C03p04320 Brassica napus HOM05D005289 ORTHO05D006346 1.7e-22 110.2 116 49.1
BolC3t12965H Brassica oleracea HOM05D005289 ORTHO05D006346 1.7e-22 110.2 116 49.1
BraA03t09731Z Brassica rapa HOM05D002331 ORTHO05D002624 1.7e-22 110.2 116 48.3
Duzib132G0443 Durio zibethinus HOM05D005289 ORTHO05D006346 1.7e-22 110.2 112 50.9
Glyma.05G000300 Glycine max HOM05D005289 ORTHO05D006346 1.7e-22 110.2 105 54.3
Nn7g38127 Nelumbo nucifera HOM05D005289 ORTHO05D006346 2.2e-22 109.8 133 51.1
VMungo0464G1452 Vigna mungo HOM05D005289 ORTHO05D006346 2.2e-22 109.8 105 53.3
BcaB01g05597 Brassica carinata HOM05D005289 ORTHO05D006346 3.8e-22 109.0 116 49.1
Cfa018663 Carpinus fangiana HOM05D005289 ORTHO05D006346 3.8e-22 109.0 80 65.0
MBI03_g11910_MAGBIO Magnolia biondii HOM05D005289 ORTHO05D006346 3.8e-22 109.0 115 49.6
A03p03840 Brassica napus HOM05D002331 ORTHO05D002624 6.5e-22 108.2 116 47.4
arahy.Tifrunner.gnm1.ann1.CPCZ9R Arachis hypogaea HOM05D005289 ORTHO05D006346 8.5e-22 107.8 79 64.6
CSS0022575 Camellia sinensis var. sinensis HOM05D005289 ORTHO05D006346 8.5e-22 107.8 84 65.5
Phvul.004G000400 Phaseolus vulgaris HOM05D005289 ORTHO05D006346 8.5e-22 107.8 105 53.3
HPP92_004266 Vanilla planifolia HOM05D005289 ORTHO05D006346 8.5e-22 107.8 116 53.4
Aqoxy3G04359 Aquilegia oxysepala HOM05D005289 ORTHO05D006346 1.9e-21 106.7 115 51.3
Hma1.2p1_2160F.1_g315560 Hydrangea macrophylla HOM05D005289 ORTHO05D006346 2.5e-21 106.3 81 64.2
Sc06g0007700 Simmondsia chinensis HOM05D005289 ORTHO05D006346 2.5e-21 106.3 79 62.0
Eucgr.G02623 Eucalyptus grandis HOM05D005289 ORTHO05D006346 5.5e-21 105.1 79 64.6
PGR142G2143 Punica granatum HOM05D005289 ORTHO05D006346 5.5e-21 105.1 112 52.7
TWI77G0922 Tripterygium wilfordii HOM05D005289 ORTHO05D006346 5.5e-21 105.1 128 48.4
CDE11G0284 Ceratophyllum demersum HOM05D005289 ORTHO05D006346 7.2e-21 104.8 79 64.6
Manes.14G174500 Manihot esculenta HOM05D005289 ORTHO05D006346 7.2e-21 104.8 82 61.0
PSO782G1364 Papaver somniferum HOM05D005289 ORTHO05D006346 7.2e-21 104.8 115 49.6
ATR0124G002 Amborella trichopoda HOM05D005289 ORTHO05D006346 1.2e-20 104.0 83 63.9
Thecc.02G151000 Theobroma cacao HOM05D005289 ORTHO05D006346 1.2e-20 104.0 116 46.6
BcaB01g05599 Brassica carinata HOM05D005289 ORTHO05D006346 2.1e-20 103.2 112 50.0
Ca_04131_v3 Cicer arietinum L. HOM05D005289 ORTHO05D006346 2.1e-20 103.2 105 48.6
Cpa.g.sc248.7 Carica papaya HOM05D005289 ORTHO05D006346 3.6e-20 102.4 116 49.1
Lj9P634T19 Lonicera japonica HOM05D005289 ORTHO05D006346 3.6e-20 102.4 97 53.6
CDE05G2330 Ceratophyllum demersum HOM05D005289 ORTHO05D006346 4.7e-20 102.1 112 50.0
Lsat_1_v5_gn_4_31381 Lactuca sativa HOM05D005289 ORTHO05D006346 4.7e-20 102.1 121 45.5
Hund08591 Selenicereus undatus HOM05D005289 ORTHO05D006346 4.7e-20 102.1 119 47.1
MSTRG.5030 Avicennia marina HOM05D005289 ORTHO05D006346 6.1e-20 101.7 113 53.1
HanXRQChr17g0563021 Helianthus annuus HOM05D005289 ORTHO05D006346 6.1e-20 101.7 112 51.8
Glyma.19G000200 Glycine max HOM05D005289 ORTHO05D006346 8.0e-20 101.3 106 50.9
Thhalv10014787m.g Eutrema salsugineum HOM05D005289 ORTHO05D006346 1.4e-19 100.5 78 64.1
Carub.0006s2124 Capsella rubella HOM05D005289 ORTHO05D006346 1.8e-19 100.1 83 59.0
Eucgr.J00323 Eucalyptus grandis HOM05D005289 ORTHO05D006346 1.8e-19 100.1 114 48.2
SalBow6G0941 Salvia bowleyana HOM05D005289 ORTHO05D006346 2.3e-19 99.8 112 54.5
Aa31LG3G18150 Aethionema arabicum HOM05D005289 ORTHO05D006346 4.0e-19 99.0 83 57.8
Lsat_1_v5_gn_4_31280 Lactuca sativa HOM05D007122 ORTHO05D008918 4.0e-19 99.0 116 49.1
Medtr6g004100 Medicago truncatula HOM05D005289 ORTHO05D006346 4.0e-19 99.0 120 47.5
Oeu049492.1 Olea europaea HOM05D005289 ORTHO05D006346 4.0e-19 99.0 87 60.9
SGA_v2.0_scaffold24G10667 Striga asiatica HOM05D005289 ORTHO05D006346 4.0e-19 99.0 87 58.6
Actinidia31077 Actinidia chinensis HOM05D005289 ORTHO05D006346 6.8e-19 98.2 77 63.6
AL6G34730 Arabidopsis lyrata HOM05D005289 ORTHO05D006346 6.8e-19 98.2 80 60.0
A02p40970 Brassica napus HOM05D005289 ORTHO05D006346 6.8e-19 98.2 117 47.0
BraA02t09045Z Brassica rapa HOM05D005289 ORTHO05D006346 6.8e-19 98.2 117 47.0
Os04g0528800 Oryza sativa ssp. japonica HOM05D005289 ORTHO05D006346 6.8e-19 98.2 114 48.2
Cc02_g28180 Coffea canephora HOM05D005289 ORTHO05D006346 8.8e-19 97.8 86 60.5
CARHR204630 Cardamine hirsuta HOM05D005289 ORTHO05D006346 1.2e-18 97.4 79 60.8
Oeu049005.1 Olea europaea HOM05D005289 ORTHO05D006346 1.2e-18 97.4 87 60.9
Solyc01g087520.3 Solanum lycopersicum HOM05D005289 ORTHO05D006346 1.5e-18 97.1 86 61.6
AL6G18870 Arabidopsis lyrata HOM05D005289 ORTHO05D006346 2.6e-18 96.3 79 59.5
AT5G08410 Arabidopsis thaliana HOM05D005289 ORTHO05D006346 2.6e-18 96.3 79 59.5
AT5G23440 Arabidopsis thaliana HOM05D005289 ORTHO05D006346 2.6e-18 96.3 123 50.4
Nitab4.5_0006228g0010 Nicotiana tabacum HOM05D005289 ORTHO05D006346 2.6e-18 96.3 83 59.0
Sopen01g034490 Solanum pennellii HOM05D005289 ORTHO05D006346 2.6e-18 96.3 86 61.6
PGSC0003DMG400006858 Solanum tuberosum HOM05D005289 ORTHO05D006346 2.6e-18 96.3 86 61.6
C02p60860 Brassica napus HOM05D005289 ORTHO05D006346 3.4e-18 95.9 117 46.2
Carub.0006s0732 Capsella rubella HOM05D005289 ORTHO05D006346 3.4e-18 95.9 79 59.5
CARHR190070 Cardamine hirsuta HOM05D005289 ORTHO05D006346 4.4e-18 95.5 116 45.7
CAN.G219.47 Capsicum annuum HOM05D005289 ORTHO05D006346 5.7e-18 95.1 83 60.2
Migut.N01609 Erythranthe guttata HOM05D005289 ORTHO05D006346 5.7e-18 95.1 87 60.9
Nitab4.5_0000707g0260 Nicotiana tabacum HOM05D005289 ORTHO05D006346 5.7e-18 95.1 83 59.0
Sp6g34530 Schrenkiella parvula HOM05D005289 ORTHO05D006346 5.7e-18 95.1 76 61.8
Oeu006561.1 Olea europaea HOM05D005289 ORTHO05D006346 7.5e-18 94.7 113 45.1
Thhalv10005472m.g Eutrema salsugineum HOM05D005289 ORTHO05D006346 9.8e-18 94.4 78 59.0
BolC2t12138H Brassica oleracea HOM05D005289 ORTHO05D006346 1.3e-17 94.0 117 46.2
Os02g0638300 Oryza sativa ssp. japonica HOM05D005289 ORTHO05D006346 1.3e-17 94.0 81 56.8
PGR044G1862 Punica granatum HOM05D005289 ORTHO05D006346 1.7e-17 93.6 121 46.3
THA.LOC104819368 Tarenaya hassleriana HOM05D005289 ORTHO05D006346 1.7e-17 93.6 74 62.2
AagrBONN_evm.TU.Sc2ySwM_344.750 Anthoceros agrestis HOM05D005289 ORTHO05D006346 2.2e-17 93.2 78 60.3
Sed0008094 Sechium edule HOM05D005289 ORTHO05D006346 2.2e-17 93.2 82 57.3
Zm00001eb248360 Zea mays HOM05D005289 ORTHO05D006346 2.2e-17 93.2 84 56.0
TPR.G25213 Trifolium pratense HOM05D005289 ORTHO05D006346 2.8e-17 92.8 85 56.5
Sp2g23720 Schrenkiella parvula HOM05D005289 ORTHO05D006346 4.8e-17 92.0 79 55.7
Sed0001576 Sechium edule HOM05D005289 ORTHO05D006346 6.3e-17 91.7 123 44.7
CsaV3_5G029240 Cucumis sativus L. HOM05D005289 ORTHO05D006346 8.3e-17 91.3 82 56.1
MD10G1109200 Malus domestica HOM05D005289 ORTHO05D006346 8.3e-17 91.3 72 59.7
MELO3C011776.2 Cucumis melo HOM05D004444 ORTHO05D005246 1.1e-16 90.9 82 54.9
ClCG11G012840 Citrullus lanatus HOM05D005289 ORTHO05D006346 1.8e-16 90.1 82 54.9
SEGI_30396 Sequoiadendron giganteum HOM05D005289 ORTHO05D006346 1.8e-16 90.1 106 43.4
Gohir.A12G011400 Gossypium hirsutum HOM05D005289 ORTHO05D006346 2.4e-16 89.7 71 62.0
unitig_699.g19828 Utricularia gibba HOM05D005289 ORTHO05D006346 2.4e-16 89.7 87 54.0
Zm00001eb075910 Zea mays HOM05D005289 ORTHO05D006346 3.1e-16 89.4 102 47.1
Zm00001eb185670 Zea mays HOM05D005289 ORTHO05D006346 3.1e-16 89.4 84 53.6
Gohir.D12G011800 Gossypium hirsutum HOM05D005289 ORTHO05D006346 5.4e-16 88.6 69 63.8
Gorai.008G011800 Gossypium raimondii HOM05D005289 ORTHO05D006346 5.4e-16 88.6 69 63.8
Ah.15g093460 Amaranthus hybridus HOM05D005289 ORTHO05D006346 7.0e-16 88.2 115 40.0
CDE01G0630 Ceratophyllum demersum HOM05D000556 ORTHO05D006346 7.0e-16 88.2 91 47.3
Pp3c4_31020 Physcomitrium patens HOM05D005289 ORTHO05D006346 1.2e-15 87.4 116 47.4
ECA234G0076 Erigeron canadensis HOM05D005289 ORTHO05D006346 1.6e-15 87.0 83 56.6
AUR62038497 Chenopodium quinoa HOM05D005289 ORTHO05D006346 2.0e-15 86.7 112 42.0
SMO367G0363 Selaginella moellendorffii HOM05D005289 ORTHO05D006346 2.7e-15 86.3 77 55.8
AUR62028426 Chenopodium quinoa HOM05D005289 ORTHO05D006346 3.5e-15 85.9 79 49.4
AagrBONN_evm.TU.Sc2ySwM_368.462 Anthoceros agrestis HOM05D000595 ORTHO05D006346 5.9e-15 85.1 73 58.9
Pp3c4_29510 Physcomitrium patens HOM05D005289 ORTHO05D006346 7.7e-15 84.7 114 44.7
Mapoly0005s0050 Marchantia polymorpha HOM05D005289 ORTHO05D006346 8.5e-14 81.3 78 53.8
MSTRG.28061 Avicennia marina HOM05D005289 ORTHO05D006346 1.1e-13 80.9 83 55.4
Pp3c26_13800 Physcomitrium patens HOM05D005289 ORTHO05D006346 4.2e-13 79.0 112 42.0
Pp3c26_13840 Physcomitrium patens HOM05D005289 ORTHO05D006346 4.2e-13 79.0 112 42.0
CBR_g32063 Chara braunii HOM05D005289 ORTHO05D006346 4.7e-12 75.5 114 43.0
EL10Ac1g01282 Beta vulgaris HOM05D005289 ORTHO05D006346 3.0e-11 72.8 81 43.2
Peaxi162Scf00019g00006 Petunia axillaris HOM05D005289 ORTHO05D006346 1.2e-10 70.9 97 42.3
Cre16.g687294 Chlamydomonas reinhardtii HOM05D005289 ORTHO05D006346 2.6e-10 69.7 76 46.1
A06p34430 Brassica napus HOM05D005289 ORTHO05D006346 5.7e-10 68.6 71 49.3
BraA06t26372Z Brassica rapa HOM05D005289 ORTHO05D006346 5.7e-10 68.6 71 49.3
Psat1g053320 Pisum sativum HOM05D005289 ORTHO05D006346 2.9e-06 56.2 93 41.9


User provided reference genes

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