Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Sabra10G0196900 Salix brachista HOM05D004479 ORTHO05D005597 0.0e+00 1164.8 660 100.0
Potri.010G253100 Populus trichocarpa HOM05D004479 ORTHO05D005597 1.2e-230 803.5 661 73.8
Ciclev10025265m.g Citrus clementina HOM05D004479 ORTHO05D005597 2.9e-184 649.4 684 61.5
Manes.06G177300 Manihot esculenta HOM05D004479 ORTHO05D005597 6.0e-182 641.7 681 61.8
Dinv09182 Davidia involucrata HOM05D004479 ORTHO05D005597 4.3e-172 609.0 675 60.4
Gohir.A01G221776 Gossypium hirsutum HOM05D004479 ORTHO05D005597 1.6e-171 607.1 668 60.3
Gorai.010G142700 Gossypium raimondii HOM05D004479 ORTHO05D005597 3.4e-169 599.4 680 58.8
Prupe.1G049400 Prunus persica HOM05D004479 ORTHO05D005597 9.4e-167 591.3 671 57.4
QL05p084035 Quercus lobata HOM05D004479 ORTHO05D005597 9.4e-167 591.3 655 60.0
TAR626G0959 Trochodendron aralioides HOM05D004479 ORTHO05D005597 4.6e-166 589.0 661 59.8
Thecc.06G058800 Theobroma cacao HOM05D004479 ORTHO05D005597 7.4e-164 581.6 678 60.5
Duzib192G0061 Durio zibethinus HOM05D004479 ORTHO05D005597 1.8e-162 577.0 661 56.4
Actinidia21882 Actinidia chinensis HOM05D004479 ORTHO05D005597 9.1e-162 574.7 677 56.1
Medtr5g013930 Medicago truncatula HOM05D004479 ORTHO05D005597 4.5e-161 572.4 666 56.3
MD16G1227300 Malus domestica HOM05D004479 ORTHO05D005597 7.7e-161 571.6 669 56.1
TPR.G5557 Trifolium pratense HOM05D004479 ORTHO05D005597 7.7e-161 571.6 654 55.8
CsaV3_3G030520 Cucumis sativus L. HOM05D004479 ORTHO05D005597 2.2e-160 570.1 679 55.1
RcHm_v2.0_Chr4g0395701 Rosa chinensis HOM05D004479 ORTHO05D005597 3.8e-160 569.3 661 56.0
arahy.Tifrunner.gnm1.ann1.HYUF3S Arachis hypogaea HOM05D004479 ORTHO05D005597 5.0e-160 568.9 637 57.3
arahy.Tifrunner.gnm1.ann1.SFLF9H Arachis hypogaea HOM05D004479 ORTHO05D005597 1.4e-159 567.4 637 57.1
MELO3C026710.2 Cucumis melo HOM05D004479 ORTHO05D005597 1.6e-158 563.9 665 53.8
COL.COLO4_31168 Corchorus olitorius HOM05D004479 ORTHO05D005597 5.2e-157 558.9 614 61.7
Cc04_g00200 Coffea canephora HOM05D004479 ORTHO05D005597 2.6e-156 556.6 647 56.7
GSVIVG01029540001 Vitis vinifera HOM05D004479 ORTHO05D005597 7.4e-156 555.1 675 58.2
Gohir.A06G118600 Gossypium hirsutum HOM05D004479 ORTHO05D005597 1.1e-154 551.2 668 59.0
CANSAT78G0411 Cannabis sativa HOM05D004479 ORTHO05D005597 2.0e-153 547.0 678 56.0
ClCG07G014640 Citrullus lanatus HOM05D004479 ORTHO05D005597 1.0e-152 544.7 672 53.9
Atru.chr1.2695 Acer truncatum HOM05D004479 ORTHO05D005597 1.7e-152 543.9 684 55.3
Ca_21726_v3 Cicer arietinum L. HOM05D004479 ORTHO05D005597 1.7e-152 543.9 648 58.6
Nn7g37005 Nelumbo nucifera HOM05D004479 ORTHO05D005597 8.5e-152 541.6 669 56.8
VMungo1080G0276 Vigna mungo HOM05D004479 ORTHO05D005597 2.5e-151 540.0 641 55.1
Eucgr.J03177 Eucalyptus grandis HOM05D004479 ORTHO05D005597 4.2e-151 539.3 691 54.6
vmacro18747 Vaccinium macrocarpon HOM05D004479 ORTHO05D005597 5.5e-151 538.9 682 52.3
FvH4_4g04880 Fragaria vesca HOM05D004479 ORTHO05D005597 4.0e-149 532.7 670 53.7
FAN17G0751 Fragaria x ananassa HOM05D004479 ORTHO05D005597 3.3e-148 529.6 674 52.4
PGR119G2289 Punica granatum HOM05D004479 ORTHO05D005597 3.3e-148 529.6 643 58.9
Nitab4.5_0004918g0010 Nicotiana tabacum HOM05D004479 ORTHO05D005597 7.5e-148 528.5 661 53.7
Phvul.005G185100 Phaseolus vulgaris HOM05D004479 ORTHO05D005597 3.7e-147 526.2 640 54.7
MSTRG.10879 Avicennia marina HOM05D004479 ORTHO05D005597 8.2e-147 525.0 663 56.1
Solyc03g123960.3 Solanum lycopersicum HOM05D004479 ORTHO05D005597 2.4e-146 523.5 659 55.8
Glyma.12G188300 Glycine max HOM05D004479 ORTHO05D005597 4.1e-146 522.7 648 54.2
Oeu049641.1 Olea europaea HOM05D004479 ORTHO05D005597 6.5e-144 515.4 665 50.7
Aqoxy7G02788 Aquilegia oxysepala HOM05D004479 ORTHO05D005597 8.5e-144 515.0 641 54.8
CSS0019442 Camellia sinensis var. sinensis HOM05D004479 ORTHO05D005597 1.1e-143 514.6 685 52.8
Migut.I01194 Erythranthe guttata HOM05D004479 ORTHO05D005597 1.2e-142 511.1 665 54.7
FAN22G0181 Fragaria x ananassa HOM05D004479 ORTHO05D005597 1.2e-142 511.1 614 54.7
Nitab4.5_0002664g0040 Nicotiana tabacum HOM05D004479 ORTHO05D005597 8.0e-142 508.4 676 52.5
HanXRQChr12g0359691 Helianthus annuus HOM05D004479 ORTHO05D005597 1.8e-141 507.3 638 54.7
Sopen03g041690 Solanum pennellii HOM05D004479 ORTHO05D005597 3.0e-141 506.5 705 52.3
EL10Ac7g18162 Beta vulgaris HOM05D004479 ORTHO05D005597 2.0e-140 503.8 614 52.3
TWI09G1491 Tripterygium wilfordii HOM05D004479 ORTHO05D005597 2.6e-140 503.4 616 55.4
Sed0022371 Sechium edule HOM05D004479 ORTHO05D005597 2.8e-139 500.0 641 54.9
Hma1.2p1_1111F.1_g258400 Hydrangea macrophylla HOM05D004479 ORTHO05D005597 3.5e-137 493.0 512 64.3
Rhsim08G0249800 Rhododendron simsii HOM05D004479 ORTHO05D005597 1.3e-136 491.1 631 55.0
RcHm_v2.0_Chr4g0395721 Rosa chinensis HOM05D004479 ORTHO05D005597 1.3e-136 491.1 581 57.0
CAN.G790.12 Capsicum annuum HOM05D004479 ORTHO05D005597 5.0e-136 489.2 664 53.9
THA.LOC104800314 Tarenaya hassleriana HOM05D004479 ORTHO05D005597 1.5e-135 487.6 686 51.3
Cfa002151 Carpinus fangiana HOM05D004479 ORTHO05D005597 4.0e-133 479.6 593 55.5
Ah.15g094320 Amaranthus hybridus HOM05D004479 ORTHO05D005597 1.3e-131 474.6 662 48.8
Psat5g288040 Pisum sativum HOM05D004479 ORTHO05D005597 1.3e-131 474.6 492 62.0
Lsat_1_v5_gn_5_137281 Lactuca sativa HOM05D004479 ORTHO05D005597 1.8e-130 470.7 613 54.2
ECA234G3188 Erigeron canadensis HOM05D001810 ORTHO05D005662 2.0e-129 467.2 621 49.4
MBI13_g34036_MAGBIO Magnolia biondii HOM05D004479 ORTHO05D005597 2.3e-128 463.8 578 54.7
Lj3g0018425 Lotus japonicus HOM05D004479 ORTHO05D005597 3.8e-128 463.0 661 53.3
Sp2g14070 Schrenkiella parvula HOM05D004479 ORTHO05D005597 1.1e-127 461.5 663 49.6
Hund18609 Selenicereus undatus HOM05D004479 ORTHO05D005597 1.1e-127 461.5 678 48.1
Aa31LG2G7330 Aethionema arabicum HOM05D004479 ORTHO05D005597 3.3e-127 459.9 630 50.6
PSO170G2367 Papaver somniferum HOM05D004479 ORTHO05D005597 1.6e-126 457.6 666 52.6
AUR62001343 Chenopodium quinoa HOM05D004479 ORTHO05D005597 8.9e-125 451.8 668 46.7
MBI13_g01743_MAGBIO Magnolia biondii HOM05D004479 ORTHO05D005597 1.2e-124 451.4 579 53.5
PSO384G0383 Papaver somniferum HOM05D004479 ORTHO05D005597 5.8e-124 449.1 667 52.5
Peaxi162Scf00038g02656 Petunia axillaris HOM05D004479 ORTHO05D005597 1.3e-123 448.0 649 47.6
unitig_748.g8028 Utricularia gibba HOM05D004479 ORTHO05D005597 1.4e-122 444.5 649 48.7
Lj6C65T2 Lonicera japonica HOM05D004479 ORTHO05D005597 1.8e-122 444.1 322 76.1
HPP92_008247 Vanilla planifolia HOM05D004479 ORTHO05D005597 2.4e-122 443.7 659 47.8
Nitab4.5_0005664g0060 Nicotiana tabacum HOM05D004479 ORTHO05D005597 1.6e-121 441.0 635 47.1
PSO063G0217 Papaver somniferum HOM05D004479 ORTHO05D005597 5.0e-120 436.0 671 51.1
Hund18598 Selenicereus undatus HOM05D004479 ORTHO05D005597 8.6e-120 435.3 572 50.2
Zm00001eb320420 Zea mays HOM05D004479 ORTHO05D005597 1.5e-119 434.5 645 46.2
CARHR213680 Cardamine hirsuta HOM05D004479 ORTHO05D005597 2.5e-119 433.7 648 49.5
SGA_v2.0_scaffold122G33268 Striga asiatica HOM05D004479 ORTHO05D005597 4.0e-117 426.4 326 71.5
Glyma.13G372700 Glycine max HOM05D004479 ORTHO05D005597 4.4e-116 422.9 487 56.5
ATR0626G211 Amborella trichopoda HOM05D004479 ORTHO05D005597 2.2e-115 420.6 638 45.8
Sc12g0011150 Simmondsia chinensis HOM05D004479 ORTHO05D005597 4.9e-115 419.5 678 46.9
SalBow6G0079 Salvia bowleyana HOM05D004479 ORTHO05D005597 1.4e-114 417.9 663 44.2
Ca_04816_v3 Cicer arietinum L. HOM05D004479 ORTHO05D005597 3.2e-114 416.8 644 50.5
Thhalv10004003m.g Eutrema salsugineum HOM05D004479 ORTHO05D005597 1.2e-113 414.8 635 46.1
AT2G03070 Arabidopsis thaliana HOM05D004479 ORTHO05D005597 3.5e-113 413.3 663 46.9
CDE02G4004 Ceratophyllum demersum HOM05D004479 ORTHO05D005597 6.0e-113 412.5 641 45.7
PGSC0003DMG400009164 Solanum tuberosum HOM05D004479 ORTHO05D005597 6.0e-113 412.5 322 72.4
Carub.0005s0192 Capsella rubella HOM05D004479 ORTHO05D005597 1.0e-112 411.8 657 46.3
DCAR_030619 Daucus carota HOM05D004479 ORTHO05D005597 1.3e-107 394.8 309 70.6
Gohir.D06G122500 Gossypium hirsutum HOM05D004479 ORTHO05D005597 1.4e-106 391.3 532 53.9
AL5G12650 Arabidopsis lyrata HOM05D004479 ORTHO05D005597 3.5e-105 386.7 638 46.2
BraA09t38008Z Brassica rapa HOM05D004479 ORTHO05D005597 2.3e-104 384.0 653 46.1
A09p24080 Brassica napus HOM05D004479 ORTHO05D005597 1.5e-103 381.3 643 48.2
BcaC04g21507 Brassica carinata HOM05D004479 ORTHO05D005597 3.6e-102 376.7 658 45.0
AUR62025661 Chenopodium quinoa HOM05D004479 ORTHO05D005597 4.7e-102 376.3 590 44.1
C09p30960 Brassica napus HOM05D004479 ORTHO05D005597 3.1e-101 373.6 658 44.8
BolC9t55955H Brassica oleracea HOM05D004479 ORTHO05D005597 3.1e-101 373.6 658 44.8
BcaB07g30687 Brassica carinata HOM05D004479 ORTHO05D005597 3.2e-98 363.6 631 43.9
Dinv37783 Davidia involucrata HOM05D004479 ORTHO05D005597 7.3e-87 325.9 218 83.0
Haze_16264 Corylus avellana HOM05D004479 ORTHO05D005597 3.8e-83 313.5 214 80.8
Os03g0423800 Oryza sativa ssp. japonica HOM05D004479 ORTHO05D005597 7.1e-82 309.3 232 68.1
Cpa.g.sc1515.2 Carica papaya HOM05D004479 ORTHO05D005597 5.6e-79 299.7 216 74.1
PSO836G0001 Papaver somniferum HOM05D004479 ORTHO05D005597 2.4e-74 284.3 577 45.9
Dinv37782 Davidia involucrata HOM05D004479 ORTHO05D005597 6.9e-69 266.2 458 46.1
BolC7t43874H Brassica oleracea HOM05D004479 ORTHO05D005597 1.7e-67 261.5 224 63.4
BraA06t27217Z Brassica rapa HOM05D004479 ORTHO05D005597 1.9e-66 258.1 237 60.8
BcaC06g34021 Brassica carinata HOM05D004479 ORTHO05D005597 4.2e-66 256.9 222 62.2
BcaC06g31203 Brassica carinata HOM05D004479 ORTHO05D005597 1.2e-65 255.4 223 61.0
A06p43310 Brassica napus HOM05D004479 ORTHO05D005597 1.4e-61 241.9 268 53.7
Pp3c18_4030 Physcomitrium patens HOM05D004479 ORTHO05D005597 2.7e-57 227.6 305 45.9
Oeu062492.1 Olea europaea HOM05D004479 ORTHO05D005597 1.8e-53 214.9 238 53.8
Psat1g118080 Pisum sativum HOM05D004479 ORTHO05D005597 1.3e-51 208.8 168 68.5
Mapoly0029s0023 Marchantia polymorpha HOM05D004479 ORTHO05D005597 3.8e-51 207.2 332 42.5
C07p33640 Brassica napus HOM05D004479 ORTHO05D005597 2.3e-48 198.0 224 54.0
SMO114G0145 Selaginella moellendorffii HOM05D004479 ORTHO05D005597 1.4e-42 178.7 285 41.4
AagrBONN_evm.TU.Sc2ySwM_117.2251 Anthoceros agrestis HOM05D004479 ORTHO05D005597 3.2e-42 177.6 203 47.8
Aqoxy377s002 Aquilegia oxysepala HOM05D004479 ORTHO05D005597 7.4e-39 166.4 224 49.6
AagrBONN_evm.TU.Sc2ySwM_117.1357 Anthoceros agrestis HOM05D004479 ORTHO05D005597 9.7e-39 166.0 205 45.4
CBR_g41305 Chara braunii HOM05D004479 ORTHO05D005597 1.2e-36 159.1 273 38.8
CiPaw.01G090700 Carya illinoinensis HOM05D004479 ORTHO05D005597 2.2e-35 154.8 200 53.0
CARHR145470 Cardamine hirsuta HOM05D004479 ORTHO05D005597 2.1e-33 148.3 110 73.6
Psat0s1762g0040 Pisum sativum HOM05D004479 ORTHO05D005597 1.3e-30 139.0 194 46.4
SEGI_11469 Sequoiadendron giganteum HOM05D004479 ORTHO05D005597 2.2e-30 138.3 165 49.1
COL.COLO4_31578 Corchorus olitorius HOM05D001810 ORTHO05D005662 5.5e-26 123.6 245 41.2
Cpa.g.sc155.18 Carica papaya HOM05D004479 ORTHO05D005597 2.3e-24 118.2 95 72.6
QL03p033126 Quercus lobata HOM05D004479 ORTHO05D005597 6.3e-22 110.2 74 78.4
Actinidia21652 Actinidia chinensis HOM05D004479 ORTHO05D005597 2.4e-21 108.2 94 59.6
Psat0s1227g0080 Pisum sativum HOM05D000020 ORTHO05D015801 5.9e-20 103.6 180 42.8
SEGI_18721 Sequoiadendron giganteum HOM05D004479 ORTHO05D005597 3.8e-19 100.9 91 57.1
SHI42840 Sapria himalayana HOM05D004479 ORTHO05D005597 3.3e-18 97.8 133 47.4
SHI42601 Sapria himalayana HOM05D004479 ORTHO05D005597 2.3e-16 91.7 152 40.8
QL05p046913 Quercus lobata HOM05D004479 ORTHO05D005597 6.8e-16 90.1 113 53.1
SHI24407 Sapria himalayana HOM05D004479 ORTHO05D005597 4.4e-15 87.4 195 39.5
FAN12G4029 Fragaria x ananassa HOM05D002474 ORTHO05D007142 6.3e-14 83.6 159 40.9
DCAR_030620 Daucus carota HOM05D004479 ORTHO05D005597 3.1e-13 81.3 99 53.5
SHI42976 Sapria himalayana HOM05D004479 ORTHO05D005597 7.0e-13 80.1 116 44.8
SHI31116 Sapria himalayana HOM05D004479 ORTHO05D005597 3.5e-12 77.8 66 59.1
SHI50578 Sapria himalayana HOM05D004479 ORTHO05D005597 1.7e-11 75.5 249 31.7
COL.COLO4_18371 Corchorus olitorius HOM05D004479 ORTHO05D005597 2.9e-11 74.7 68 55.9
Psat3g175600 Pisum sativum HOM05D004479 ORTHO05D005597 1.1e-10 72.8 70 61.4
SHI49595 Sapria himalayana HOM05D004479 ORTHO05D005597 1.1e-10 72.8 113 44.2
SHI31115 Sapria himalayana HOM05D004479 ORTHO05D005597 1.5e-10 72.4 44 79.5
COL.COLO4_27264 Corchorus olitorius HOM05D004479 ORTHO05D005597 2.5e-10 71.6 73 50.7
Haze_16261 Corylus avellana HOM05D004479 ORTHO05D029161 2.5e-10 71.6 68 67.6
Haze_18674 Corylus avellana HOM05D004479 ORTHO05D005597 2.5e-10 71.6 40 87.5
BcaC04g22058 Brassica carinata HOM05D006908 ORTHO05D008662 4.3e-10 70.9 39 87.2
C09p24010 Brassica napus HOM05D002960 ORTHO05D042139 4.3e-10 70.9 39 87.2
BolC9t55321H Brassica oleracea HOM05D002960 ORTHO05D042139 4.3e-10 70.9 39 87.2
SHI34972 Sapria himalayana HOM05D004479 ORTHO05D005597 6.1e-09 67.0 255 28.2
Hma1.2p1_0370F.1_g138010 Hydrangea macrophylla HOM05D004479 ORTHO05D005597 2.3e-08 65.1 74 59.5
Peaxi162Scf00038g02640 Petunia axillaris HOM05D004479 ORTHO05D029161 5.2e-08 63.9 42 73.8
SHI36675 Sapria himalayana HOM05D004479 ORTHO05D005597 1.5e-07 62.4 54 63.0
QL08p038027 Quercus lobata HOM05D004479 ORTHO05D337893 2.0e-07 62.0 43 74.4
Psat7g008520 Pisum sativum HOM05D004479 ORTHO05D005597 4.4e-07 60.8 127 37.0
SHI13126 Sapria himalayana HOM05D000105 ORTHO05D000023 4.4e-07 60.8 53 60.4
BcaC02g11491 Brassica carinata HOM05D019637 ORTHO05D018695 5.8e-07 60.5 40 82.5
C04p14790 Brassica napus HOM05D004479 ORTHO05D018695 5.8e-07 60.5 40 82.5
BolC4t23053H Brassica oleracea HOM05D004479 ORTHO05D018695 5.8e-07 60.5 40 82.5
Cpa.g.sc1515.1 Carica papaya HOM05D004479 ORTHO05D005597 6.4e-06 57.0 42 83.3


User provided reference genes

Program Settings