Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Sabra10G0193400 Salix brachista HOM05D003737 ORTHO05D004640 4.6e-237 824.3 457 100.0
Potri.010G247900 Populus trichocarpa HOM05D003737 ORTHO05D004640 4.0e-217 758.1 458 93.0
Potri.008G010900 Populus trichocarpa HOM05D003737 ORTHO05D004640 7.6e-192 674.1 468 82.7
Sabra08G0006600 Salix brachista HOM05D003737 ORTHO05D004640 2.6e-184 649.0 468 76.1
Manes.05G191000 Manihot esculenta HOM05D003737 ORTHO05D004640 1.6e-152 543.5 474 63.7
ClCG08G008580 Citrullus lanatus HOM05D003737 ORTHO05D004640 2.5e-142 509.6 478 59.4
COL.COLO4_05028 Corchorus olitorius HOM05D003737 ORTHO05D004640 5.5e-142 508.4 469 59.5
Eucgr.J00319 Eucalyptus grandis HOM05D003737 ORTHO05D004640 2.1e-141 506.5 464 60.6
MELO3C019928.2 Cucumis melo HOM05D003737 ORTHO05D004640 1.8e-140 503.4 474 58.9
Duzib106G0442 Durio zibethinus HOM05D003737 ORTHO05D004640 2.0e-139 500.0 472 58.5
CsaV3_6G004570 Cucumis sativus L. HOM05D003737 ORTHO05D004640 9.8e-139 497.7 475 58.3
Cfa010430 Carpinus fangiana HOM05D003737 ORTHO05D004640 2.2e-138 496.5 471 58.6
Atru.chr12.1119 Acer truncatum HOM05D003737 ORTHO05D004640 3.7e-138 495.7 464 59.1
Cpa.g.sc33.135 Carica papaya HOM05D003737 ORTHO05D004640 2.4e-137 493.0 464 59.7
Thecc.10G131100 Theobroma cacao HOM05D003737 ORTHO05D004640 7.0e-137 491.5 469 57.8
CiPaw.13G048500 Carya illinoinensis HOM05D003737 ORTHO05D004640 1.2e-136 490.7 474 58.0
Gohir.D06G180700 Gossypium hirsutum HOM05D003737 ORTHO05D004640 1.6e-136 490.3 464 58.6
MD02G1266700 Malus domestica HOM05D003737 ORTHO05D004640 1.6e-136 490.3 472 58.9
MD07G1053000 Malus domestica HOM05D003737 ORTHO05D004640 7.7e-136 488.0 469 59.1
Duzib128G0945 Durio zibethinus HOM05D003737 ORTHO05D004640 1.3e-135 487.3 470 57.7
TWI34G0525 Tripterygium wilfordii HOM05D003737 ORTHO05D004640 1.3e-135 487.3 458 59.0
Gorai.010G212200 Gossypium raimondii HOM05D003737 ORTHO05D004640 1.7e-135 486.9 464 58.6
Sed0006452 Sechium edule HOM05D003737 ORTHO05D004640 1.7e-135 486.9 463 57.5
Gohir.A06G171900 Gossypium hirsutum HOM05D003737 ORTHO05D004640 5.0e-135 485.3 464 58.6
Gohir.D04G017900 Gossypium hirsutum HOM05D003737 ORTHO05D004640 6.5e-135 485.0 468 57.5
Gorai.012G020700 Gossypium raimondii HOM05D003737 ORTHO05D004640 6.5e-135 485.0 468 57.3
VMungo0647G1094 Vigna mungo HOM05D003737 ORTHO05D004640 1.9e-134 483.4 477 58.1
Glyma.15G223100 Glycine max HOM05D003737 ORTHO05D004640 2.5e-134 483.0 474 56.5
Prupe.2G056900 Prunus persica HOM05D003737 ORTHO05D004640 3.2e-134 482.6 470 58.1
Phvul.011G188500 Phaseolus vulgaris HOM05D003737 ORTHO05D004640 9.5e-134 481.1 472 57.2
Glyma.13G185300 Glycine max HOM05D003737 ORTHO05D004640 6.1e-133 478.4 476 56.3
Dinv20457 Davidia involucrata HOM05D003737 ORTHO05D004640 1.0e-132 477.6 470 58.7
Gohir.A05G398100 Gossypium hirsutum HOM05D003737 ORTHO05D004640 6.8e-132 474.9 467 56.3
Sed0018433 Sechium edule HOM05D003737 ORTHO05D004640 1.2e-131 474.2 470 56.2
TWI32G0890 Tripterygium wilfordii HOM05D003737 ORTHO05D004640 9.8e-131 471.1 459 58.2
Lj3g0019804 Lotus japonicus HOM05D003737 ORTHO05D004640 8.3e-130 468.0 459 54.9
CiPaw.14G038200 Carya illinoinensis HOM05D003737 ORTHO05D004640 1.2e-128 464.2 470 56.8
QL04p051647 Quercus lobata HOM05D003737 ORTHO05D004640 7.8e-128 461.5 476 56.5
PGR044G1985 Punica granatum HOM05D003737 ORTHO05D004640 1.3e-127 460.7 465 55.7
Hma1.2p1_0233F.1_g098040 Hydrangea macrophylla HOM05D003737 ORTHO05D004640 6.6e-127 458.4 466 55.6
Psat4g141920 Pisum sativum HOM05D003737 ORTHO05D004640 6.6e-127 458.4 472 55.3
CSS0038854 Camellia sinensis var. sinensis HOM05D003737 ORTHO05D004640 1.5e-126 457.2 474 54.9
CSS0046027 Camellia sinensis var. sinensis HOM05D003737 ORTHO05D004640 1.5e-126 457.2 474 54.9
CANSAT78G1307 Cannabis sativa HOM05D003737 ORTHO05D004640 3.3e-126 456.1 474 55.1
CANSAT56G0630 Cannabis sativa HOM05D003737 ORTHO05D004640 7.3e-126 454.9 470 55.3
TAR633G0465 Trochodendron aralioides HOM05D003737 ORTHO05D004640 1.2e-125 454.1 480 53.5
Lalb_Chr01g0007591 Lupinus albus HOM05D003737 ORTHO05D004640 1.8e-124 450.3 475 53.7
Medtr8g043510 Medicago truncatula HOM05D003737 ORTHO05D004640 1.8e-124 450.3 465 55.1
Haze_03384 Corylus avellana HOM05D003737 ORTHO05D004640 2.6e-123 446.4 597 46.1
Actinidia12270 Actinidia chinensis HOM05D003737 ORTHO05D004640 3.4e-123 446.0 479 53.9
Sc09g0004980 Simmondsia chinensis HOM05D003737 ORTHO05D004640 1.4e-121 440.7 474 53.8
Lj9C660G5 Lonicera japonica HOM05D003737 ORTHO05D004640 2.7e-120 436.4 478 52.7
Actinidia31420 Actinidia chinensis HOM05D003737 ORTHO05D004640 3.5e-120 436.0 463 53.6
TAR636G0393 Trochodendron aralioides HOM05D003737 ORTHO05D004640 5.9e-120 435.3 481 52.2
Lalb_Chr03g0032471 Lupinus albus HOM05D003737 ORTHO05D004640 5.0e-119 432.2 480 51.5
Rhsim07G0072700 Rhododendron simsii HOM05D003737 ORTHO05D004640 1.1e-116 424.5 469 52.0
RcHm_v2.0_Chr1g0330551 Rosa chinensis HOM05D003737 ORTHO05D004640 9.8e-115 417.9 468 51.9
TWI63G1132 Tripterygium wilfordii HOM05D003737 ORTHO05D004640 1.3e-114 417.5 429 56.6
vmacro13791 Vaccinium macrocarpon HOM05D003737 ORTHO05D004640 8.3e-114 414.8 543 46.4
Duzib128G0026 Durio zibethinus HOM05D003737 ORTHO05D004640 1.2e-112 411.0 371 59.0
Hund06832 Selenicereus undatus HOM05D003737 ORTHO05D004640 6.6e-111 405.2 500 47.6
MBI19_g24737_MAGBIO Magnolia biondii HOM05D003737 ORTHO05D004640 8.6e-111 404.8 484 47.7
C09p71760 Brassica napus HOM05D003737 ORTHO05D004081 2.5e-110 403.3 454 48.0
TPR.G25035 Trifolium pratense HOM05D003737 ORTHO05D004640 2.5e-110 403.3 350 59.7
FvH4_7g04870 Fragaria vesca HOM05D003737 ORTHO05D004640 5.6e-110 402.1 469 50.3
BolC9t59927H Brassica oleracea HOM05D003737 ORTHO05D004081 2.8e-109 399.8 454 47.6
Peaxi162Scf00220g00010 Petunia axillaris HOM05D003737 ORTHO05D004640 4.7e-109 399.1 471 51.6
FAN06G1525 Fragaria x ananassa HOM05D003737 ORTHO05D004640 1.1e-108 397.9 469 49.5
SHI21216 Sapria himalayana HOM05D003737 ORTHO05D004640 1.1e-108 397.9 491 48.1
EL10Ac4g08805 Beta vulgaris HOM05D003737 ORTHO05D004640 4.0e-108 396.0 460 48.7
Oeu013042.2 Olea europaea HOM05D003737 ORTHO05D004640 4.0e-108 396.0 509 47.0
FAN10G1609 Fragaria x ananassa HOM05D003737 ORTHO05D004640 1.5e-107 394.0 468 49.4
A10p31150 Brassica napus HOM05D003737 ORTHO05D004081 2.6e-107 393.3 455 47.3
BraA10t45159Z Brassica rapa HOM05D003737 ORTHO05D004081 2.6e-107 393.3 455 47.3
Thhalv10013430m.g Eutrema salsugineum HOM05D003737 ORTHO05D004640 5.8e-107 392.1 465 48.0
Solyc01g096780.4 Solanum lycopersicum HOM05D003737 ORTHO05D004640 2.2e-106 390.2 465 50.3
PGSC0003DMG402027528 Solanum tuberosum HOM05D003737 ORTHO05D004640 2.2e-106 390.2 472 49.2
PSO170G6472 Papaver somniferum HOM05D003737 ORTHO05D004640 1.9e-105 387.1 409 55.0
PSO782G4010 Papaver somniferum HOM05D003737 ORTHO05D004640 2.4e-105 386.7 408 54.2
Thhalv10020697m.g Eutrema salsugineum HOM05D003737 ORTHO05D004640 4.1e-105 386.0 470 46.4
CARHR085310 Cardamine hirsuta HOM05D003737 ORTHO05D004640 9.2e-105 384.8 460 47.0
Aa31LG11G5690 Aethionema arabicum HOM05D003737 ORTHO05D004640 1.6e-104 384.0 468 48.5
RcHm_v2.0_Chr1g0324281 Rosa chinensis HOM05D003737 ORTHO05D004640 7.8e-104 381.7 472 48.9
Sopen01g040480 Solanum pennellii HOM05D003737 ORTHO05D004640 1.7e-103 380.6 460 48.3
BraA05t22639Z Brassica rapa HOM05D003737 ORTHO05D004640 3.0e-103 379.8 459 48.6
Aa31LG3G3660 Aethionema arabicum HOM05D003737 ORTHO05D004640 6.6e-103 378.6 472 47.0
PSO675G8349 Papaver somniferum HOM05D003737 ORTHO05D004640 6.6e-103 378.6 415 53.3
A05p38490 Brassica napus HOM05D005327 ORTHO05D006655 8.6e-103 378.3 464 48.5
AUR62041279 Chenopodium quinoa HOM05D003737 ORTHO05D004640 1.1e-102 377.9 470 48.9
MSTRG.20485 Avicennia marina HOM05D003737 ORTHO05D004640 1.9e-102 377.1 464 48.5
CARHR208270 Cardamine hirsuta HOM05D003737 ORTHO05D004640 2.5e-102 376.7 465 46.0
C05p57390 Brassica napus HOM05D005327 ORTHO05D006655 4.3e-102 375.9 461 47.9
PSO017G3614 Papaver somniferum HOM05D003737 ORTHO05D004640 4.3e-102 375.9 460 48.5
Carub.0003s0996 Capsella rubella HOM05D003737 ORTHO05D004640 5.6e-102 375.6 471 46.7
Ciclev10001582m.g Citrus clementina HOM05D003737 ORTHO05D004640 5.6e-102 375.6 370 60.3
BolC5t34394H Brassica oleracea HOM05D003737 ORTHO05D004640 9.5e-102 374.8 459 47.9
Sp6g37810 Schrenkiella parvula HOM05D003737 ORTHO05D004640 1.6e-101 374.0 378 51.6
Carub.0006s0393 Capsella rubella HOM05D003737 ORTHO05D004640 3.6e-101 372.9 470 46.8
AL6G14700 Arabidopsis lyrata HOM05D003737 ORTHO05D004640 6.2e-101 372.1 463 46.0
Aqoxy2G00024 Aquilegia oxysepala HOM05D003737 ORTHO05D004640 1.1e-100 371.3 371 52.8
AT3G10730 Arabidopsis thaliana HOM05D003737 ORTHO05D004640 1.8e-100 370.5 463 46.7
arahy.Tifrunner.gnm1.ann1.3J71J7 Arachis hypogaea HOM05D003737 ORTHO05D004640 1.8e-100 370.5 478 47.5
PSO170G3077 Papaver somniferum HOM05D003737 ORTHO05D004640 1.8e-100 370.5 458 48.5
AL3G22200 Arabidopsis lyrata HOM05D003737 ORTHO05D004640 2.0e-99 367.1 464 46.3
ECA240G2259 Erigeron canadensis HOM05D003737 ORTHO05D004640 2.6e-99 366.7 464 47.6
arahy.Tifrunner.gnm1.ann1.J916II Arachis hypogaea HOM05D003737 ORTHO05D004640 3.4e-99 366.3 478 47.3
AL532U10020 Arabidopsis lyrata HOM05D003737 ORTHO05D004640 1.3e-98 364.4 464 45.9
DCAR_003288 Daucus carota HOM05D003737 ORTHO05D004640 2.2e-98 363.6 472 47.2
AT5G04990 Arabidopsis thaliana HOM05D003737 ORTHO05D004640 2.9e-98 363.2 467 45.8
Migut.B01171 Erythranthe guttata HOM05D003737 ORTHO05D004640 1.9e-97 360.5 449 48.1
Nitab4.5_0004903g0010 Nicotiana tabacum HOM05D003737 ORTHO05D004640 5.4e-97 359.0 472 46.4
HanXRQChr03g0073711 Helianthus annuus HOM05D003737 ORTHO05D004640 7.1e-97 358.6 465 46.0
Ah.04g162720 Amaranthus hybridus HOM05D000296 ORTHO05D000175 1.7e-95 354.0 523 44.4
ATR0307G049 Amborella trichopoda HOM05D003737 ORTHO05D004640 3.0e-95 353.2 396 50.0
Nitab4.5_0002687g0030 Nicotiana tabacum HOM05D003737 ORTHO05D004640 5.1e-95 352.4 473 45.7
Sp3g09060 Schrenkiella parvula HOM05D003737 ORTHO05D004640 2.5e-94 350.1 460 45.4
BcaB05g21740 Brassica carinata HOM05D003737 ORTHO05D004640 4.3e-94 349.4 463 43.2
THA.LOC104823158 Tarenaya hassleriana HOM05D003737 ORTHO05D004640 2.4e-92 343.6 468 44.7
CANSAT78G0409 Cannabis sativa HOM05D003737 ORTHO05D004640 3.1e-92 343.2 278 61.5
unitig_749.g13793 Utricularia gibba HOM05D003737 ORTHO05D004640 3.4e-91 339.7 373 50.1
SGA_v2.0_scaffold182G39819 Striga asiatica HOM05D003737 ORTHO05D004640 4.4e-91 339.3 461 45.3
SGA_v2.0_scaffold309G48158 Striga asiatica HOM05D003737 ORTHO05D004640 9.9e-91 338.2 453 45.9
HPP92_021189 Vanilla planifolia HOM05D003737 ORTHO05D004640 1.3e-90 337.8 409 46.5
Os01g0267600 Oryza sativa ssp. japonica HOM05D003737 ORTHO05D004640 1.9e-89 334.0 371 48.0
CDE09G1399 Ceratophyllum demersum HOM05D003737 ORTHO05D004640 6.0e-88 328.9 367 50.1
Zm00001eb128110 Zea mays HOM05D003737 ORTHO05D004640 7.8e-88 328.6 414 45.2
CAN.G134.41 Capsicum annuum HOM05D003737 ORTHO05D004640 4.3e-86 322.8 302 54.6
BcaC06g32213 Brassica carinata HOM05D003737 ORTHO05D004640 5.8e-83 312.4 420 42.9
unitig_22.g5336 Utricularia gibba HOM05D003737 ORTHO05D004640 7.6e-83 312.0 362 46.7
Ca_24114_v3 Cicer arietinum L. HOM05D003737 ORTHO05D004640 2.2e-82 310.5 373 51.2
HanXRQChr09g0247521 Helianthus annuus HOM05D003737 ORTHO05D004640 2.1e-80 303.9 456 42.3
Os05g0270200 Oryza sativa ssp. japonica HOM05D003737 ORTHO05D004640 3.0e-79 300.1 400 43.0
ECA236G2275 Erigeron canadensis HOM05D003737 ORTHO05D004640 1.8e-76 290.8 309 51.5
Zm00001eb233650 Zea mays HOM05D003737 ORTHO05D004640 1.8e-76 290.8 360 44.4
FAN03G1506 Fragaria x ananassa HOM05D003737 ORTHO05D004640 4.5e-75 286.2 453 42.2
vmacro23127 Vaccinium macrocarpon HOM05D003737 ORTHO05D002937 2.2e-74 283.9 374 46.0
Lsat_1_v5_gn_1_105040 Lactuca sativa HOM05D003737 ORTHO05D004640 3.5e-72 276.6 385 43.4
CDE08G0077 Ceratophyllum demersum HOM05D003737 ORTHO05D004640 5.1e-71 272.7 348 46.0
Lsat_1_v5_gn_1_105000 Lactuca sativa HOM05D003737 ORTHO05D004640 5.1e-71 272.7 363 44.4
Nn6g33270 Nelumbo nucifera HOM05D003737 ORTHO05D004640 6.2e-69 265.8 381 45.9
SEGI_05544 Sequoiadendron giganteum HOM05D003737 ORTHO05D004640 2.4e-68 263.8 396 40.9
Lsat_1_v5_gn_7_65181 Lactuca sativa HOM05D003737 ORTHO05D004640 2.6e-67 260.4 373 42.6
DCAR_022276 Daucus carota HOM05D003737 ORTHO05D004640 1.0e-66 258.5 250 54.4
SMO104G0002 Selaginella moellendorffii HOM05D003737 ORTHO05D004640 3.2e-65 253.4 312 42.0
SMO266G0096 Selaginella moellendorffii HOM05D003737 ORTHO05D004640 1.6e-64 251.1 312 41.7
DCAR_022277 Daucus carota HOM05D003737 ORTHO05D004640 2.5e-62 243.8 206 62.1
QL93p0223_0017 Quercus lobata HOM05D003737 ORTHO05D004640 9.0e-60 235.3 367 41.4
Mapoly0147s0033 Marchantia polymorpha HOM05D003737 ORTHO05D004640 3.4e-59 233.4 369 37.9
SMO356G0438 Selaginella moellendorffii HOM05D003737 ORTHO05D004640 1.7e-58 231.1 305 41.6
BcaC06g32214 Brassica carinata HOM05D003737 ORTHO05D004640 3.0e-55 220.3 336 38.4
Pp3c7_4170 Physcomitrium patens HOM05D003737 ORTHO05D004640 5.7e-54 216.1 381 36.5
unitig_26.g9749 Utricularia gibba HOM05D003737 ORTHO05D004640 7.4e-54 215.7 270 41.1
Pp3c11_22530 Physcomitrium patens HOM05D003737 ORTHO05D004640 9.7e-54 215.3 405 34.1
SMO119G0482 Selaginella moellendorffii HOM05D003737 ORTHO05D004640 4.8e-53 213.0 290 39.0
GSVIVG01001935001 Vitis vinifera HOM05D003737 ORTHO05D004640 1.2e-51 208.4 142 71.1
Lsat_1_v5_gn_4_103680 Lactuca sativa HOM05D003737 ORTHO05D004640 6.5e-50 202.6 190 54.2
HPP92_012444 Vanilla planifolia HOM05D003737 ORTHO05D004640 5.5e-49 199.5 312 39.7
DCAR_014025 Daucus carota HOM05D003737 ORTHO05D004640 4.7e-48 196.4 258 46.1
RcHm_v2.0_Chr2g0101681 Rosa chinensis HOM05D003737 ORTHO05D004640 7.9e-48 195.7 196 54.1
BolC1t05361H Brassica oleracea HOM05D003737 ORTHO05D004640 1.1e-46 191.8 278 43.5
SEGI_23640 Sequoiadendron giganteum HOM05D003737 ORTHO05D004640 1.3e-45 188.3 206 47.1
PGR083G2251 Punica granatum HOM05D003737 ORTHO05D004640 7.0e-44 182.6 198 48.0
AagrBONN_evm.TU.Sc2ySwM_344.2065 Anthoceros agrestis HOM05D003737 ORTHO05D004640 2.0e-43 181.0 330 35.5
RcHm_v2.0_Chr2g0101131 Rosa chinensis HOM05D003737 ORTHO05D004640 4.4e-38 163.3 137 60.6
SGA_v2.0_scaffold195G40842 Striga asiatica HOM05D003737 ORTHO05D004640 5.3e-36 156.4 242 40.1
Ciclev10003487m.g Citrus clementina HOM05D003737 ORTHO05D004640 7.7e-35 152.5 100 76.0
FvH4_1g13360 Fragaria vesca HOM05D003737 ORTHO05D004640 9.7e-30 135.6 206 41.7
AUR62034111 Chenopodium quinoa HOM05D003737 ORTHO05D004640 4.2e-25 120.2 97 61.9
MCO09G802 Micromonas commoda HOM05D003737 ORTHO05D004640 1.2e-24 118.6 203 39.4
Cfa015121 Carpinus fangiana HOM05D003737 ORTHO05D004640 3.6e-24 117.1 72 77.8
FAN23G2857 Fragaria x ananassa HOM05D003737 ORTHO05D004640 1.2e-22 112.1 195 35.9
Phvul.007G106800 Phaseolus vulgaris HOM05D003737 ORTHO05D004640 3.7e-21 107.1 82 64.6
Haze_10688 Corylus avellana HOM05D003737 ORTHO05D004640 8.3e-21 105.9 131 48.9
PRCOL_00004494 Prasinoderma coloniale HOM05D003737 ORTHO05D004640 1.6e-19 101.7 189 34.9
C08p01570 Brassica napus HOM05D003737 ORTHO05D004640 3.5e-19 100.5 71 64.8
Thhalv10015457m.g Eutrema salsugineum HOM05D003737 ORTHO05D004640 5.5e-17 93.2 85 55.3
Atru.chr12.1692 Acer truncatum HOM05D003737 ORTHO05D004640 5.7e-14 83.2 63 66.7
CAN.G481.43 Capsicum annuum HOM05D000879 ORTHO05D002043 3.3e-09 67.4 52 59.6
BcaC01g00775 Brassica carinata HOM05D056010 ORTHO05D039557 8.9e-07 59.3 34 82.4


User provided reference genes

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