Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Sabra10G0186800 Salix brachista HOM05D007318 ORTHO05D009289 3.0e-184 648.3 309 100.0
Potri.010G238500 Populus trichocarpa HOM05D007318 ORTHO05D009289 7.8e-124 447.6 224 92.9
TWI63G0749 Tripterygium wilfordii HOM05D007318 ORTHO05D009289 1.1e-122 443.7 276 70.7
CiPaw.14G032900 Carya illinoinensis HOM05D007318 ORTHO05D009289 2.1e-121 439.5 271 71.6
Atru.chr12.1022 Acer truncatum HOM05D007318 ORTHO05D009289 1.5e-119 433.3 273 71.4
Ciclev10016201m.g Citrus clementina HOM05D007318 ORTHO05D009289 2.0e-119 433.0 273 68.5
Dinv09616 Davidia involucrata HOM05D007318 ORTHO05D009289 4.4e-119 431.8 274 70.8
Manes.03G085100 Manihot esculenta HOM05D007318 ORTHO05D009289 3.8e-118 428.7 275 68.7
QL04p044887 Quercus lobata HOM05D007318 ORTHO05D009289 3.8e-118 428.7 277 69.7
Haze_02511 Corylus avellana HOM05D007318 ORTHO05D009289 7.9e-116 421.0 275 68.7
Gohir.D02G016400 Gossypium hirsutum HOM05D007318 ORTHO05D009289 4.8e-113 411.8 279 67.0
MD02G1257000 Malus domestica HOM05D007318 ORTHO05D009289 6.2e-113 411.4 273 67.0
Gorai.005G019900 Gossypium raimondii HOM05D007318 ORTHO05D009289 1.8e-112 409.8 279 67.0
Actinidia18618 Actinidia chinensis HOM05D007318 ORTHO05D009289 2.0e-111 406.4 283 64.7
CSS0042589 Camellia sinensis var. sinensis HOM05D007318 ORTHO05D009289 9.9e-111 404.1 305 60.0
CSS0001089 Camellia sinensis var. sinensis HOM05D007318 ORTHO05D009289 2.2e-110 402.9 305 59.7
Duzib151G0977 Durio zibethinus HOM05D007318 ORTHO05D009289 2.4e-109 399.4 275 66.2
Rhsim03G0098000 Rhododendron simsii HOM05D007318 ORTHO05D009289 3.2e-109 399.1 274 64.2
RcHm_v2.0_Chr1g0332361 Rosa chinensis HOM05D007318 ORTHO05D009289 3.2e-109 399.1 271 65.3
Eucgr.J00256 Eucalyptus grandis HOM05D007318 ORTHO05D009289 1.6e-108 396.7 273 64.8
Nitab4.5_0001437g0020 Nicotiana tabacum HOM05D007318 ORTHO05D009289 2.1e-108 396.4 272 66.2
Nn7g37225 Nelumbo nucifera HOM05D007318 ORTHO05D009289 1.8e-107 393.3 275 63.6
GSVIVG01001002001 Vitis vinifera HOM05D007318 ORTHO05D009289 2.3e-107 392.9 273 65.6
CAN.G645.12 Capsicum annuum HOM05D007318 ORTHO05D009289 5.1e-107 391.7 272 66.2
Lj6g0015884 Lotus japonicus HOM05D007318 ORTHO05D009289 9.6e-106 387.5 273 64.1
Nitab4.5_0011538g0040 Nicotiana tabacum HOM05D007318 ORTHO05D009289 2.1e-105 386.3 271 64.9
Sopen11g002850 Solanum pennellii HOM05D007318 ORTHO05D009289 1.1e-104 384.0 279 64.2
CsaV3_5G035390 Cucumis sativus L. HOM05D007318 ORTHO05D009289 2.4e-104 382.9 274 63.5
COL.COLO4_33011 Corchorus olitorius HOM05D007318 ORTHO05D009289 4.0e-104 382.1 280 63.2
Sed0005914 Sechium edule HOM05D007318 ORTHO05D009289 9.0e-104 380.9 277 61.4
FAN06G3353 Fragaria x ananassa HOM05D007318 ORTHO05D009289 1.5e-103 380.2 267 63.7
Lalb_Chr01g0010421 Lupinus albus HOM05D007318 ORTHO05D009289 1.5e-103 380.2 272 63.6
ECA238G4459 Erigeron canadensis HOM05D007318 ORTHO05D009289 2.0e-103 379.8 270 63.3
Oeu026589.2 Olea europaea HOM05D007318 ORTHO05D009289 2.6e-103 379.4 295 58.0
FAN01G1304 Fragaria x ananassa HOM05D007318 ORTHO05D009289 3.4e-103 379.0 267 63.7
HanXRQChr07g0194021 Helianthus annuus HOM05D007318 ORTHO05D009289 4.5e-103 378.6 270 63.3
CANSAT56G0802 Cannabis sativa HOM05D007318 ORTHO05D009289 1.0e-102 377.5 293 60.4
FvH4_7g05530 Fragaria vesca HOM05D007318 ORTHO05D009289 1.7e-102 376.7 267 63.3
Glyma.15G117500 Glycine max HOM05D007318 ORTHO05D009289 1.7e-102 376.7 274 64.2
DCAR_018980 Daucus carota HOM05D007318 ORTHO05D009289 4.9e-102 375.2 273 61.5
Phvul.007G242433 Phaseolus vulgaris HOM05D007318 ORTHO05D009289 4.9e-102 375.2 273 63.7
Peaxi162Scf00173g00322 Petunia axillaris HOM05D007318 ORTHO05D009289 2.5e-101 372.9 264 64.4
Hund22276 Selenicereus undatus HOM05D007318 ORTHO05D009289 4.2e-101 372.1 271 60.5
Cc02_g09660 Coffea canephora HOM05D007318 ORTHO05D009289 5.5e-101 371.7 274 60.9
MBI13_g32993_MAGBIO Magnolia biondii HOM05D007318 ORTHO05D009289 7.1e-101 371.3 281 60.5
Prupe.2G075500 Prunus persica HOM05D007318 ORTHO05D009289 7.1e-101 371.3 233 71.7
VMungo0720G2068 Vigna mungo HOM05D007318 ORTHO05D009289 2.1e-100 369.8 271 63.1
arahy.Tifrunner.gnm1.ann1.CJJ3HV Arachis hypogaea HOM05D007318 ORTHO05D009289 1.3e-99 367.1 271 63.5
arahy.Tifrunner.gnm1.ann1.CYVU5X Arachis hypogaea HOM05D007318 ORTHO05D009289 1.3e-99 367.1 271 63.5
arahy.Tifrunner.gnm1.ann1.PPG341 Arachis hypogaea HOM05D007318 ORTHO05D009289 1.3e-99 367.1 271 63.5
SalBow6G3105 Salvia bowleyana HOM05D007318 ORTHO05D009289 2.5e-98 362.8 271 60.1
Migut.F01608 Erythranthe guttata HOM05D007318 ORTHO05D009289 1.4e-96 357.1 292 55.1
MELO3C012351.2 Cucumis melo HOM05D007318 ORTHO05D009289 6.9e-96 354.8 287 58.9
Lsat_1_v5_gn_2_104460 Lactuca sativa HOM05D007318 ORTHO05D009289 1.2e-95 354.0 279 59.9
TPR.G10614 Trifolium pratense HOM05D007318 ORTHO05D009289 5.5e-93 345.1 279 59.9
EL10Ac4g08684 Beta vulgaris HOM05D007318 ORTHO05D009289 1.6e-92 343.6 272 57.0
Lj2A32G32 Lonicera japonica HOM05D007318 ORTHO05D009289 7.9e-92 341.3 277 57.4
Ca_20265_v3 Cicer arietinum L. HOM05D007318 ORTHO05D009289 3.0e-91 339.3 284 56.7
Medtr1g050425 Medicago truncatula HOM05D007318 ORTHO05D009289 8.7e-91 337.8 302 54.3
PSO384G0062 Papaver somniferum HOM05D007318 ORTHO05D009289 2.5e-90 336.3 279 54.8
MBI13_g44214_MAGBIO Magnolia biondii HOM05D007318 ORTHO05D009289 4.3e-90 335.5 278 56.8
SGA_v2.0_scaffold13G06456 Striga asiatica HOM05D007318 ORTHO05D009289 1.3e-89 334.0 275 55.6
Aqoxy1G02117 Aquilegia oxysepala HOM05D007318 ORTHO05D009289 1.8e-88 330.1 278 55.4
ClCG05G018410 Citrullus lanatus HOM05D007318 ORTHO05D009289 3.1e-88 329.3 274 57.7
Os11g0136500 Oryza sativa ssp. japonica HOM05D007318 ORTHO05D009289 5.3e-88 328.6 265 53.6
Solyc11g006930.3 Solanum lycopersicum HOM05D007318 ORTHO05D009289 6.9e-88 328.2 224 69.2
PGR044G0176 Punica granatum HOM05D007318 ORTHO05D009289 1.3e-86 323.9 221 65.2
Cpa.g.sc5.264 Carica papaya HOM05D007318 ORTHO05D009289 3.8e-86 322.4 231 60.6
Psat2g020440 Pisum sativum HOM05D007318 ORTHO05D009289 1.9e-85 320.1 315 50.5
unitig_0.g1560 Utricularia gibba HOM05D007318 ORTHO05D009289 1.6e-84 317.0 272 52.2
Os12g0133400 Oryza sativa ssp. japonica HOM05D007318 ORTHO05D009289 4.6e-84 315.5 265 51.7
Aqoxy1G02095 Aquilegia oxysepala HOM05D007318 ORTHO05D009289 6.7e-83 311.6 290 51.4
Zm00001eb196200 Zea mays HOM05D007318 ORTHO05D009289 9.7e-82 307.8 269 50.9
ATR1096G030 Amborella trichopoda HOM05D007318 ORTHO05D009289 7.7e-79 298.1 238 57.1
HPP92_018209 Vanilla planifolia HOM05D007318 ORTHO05D009289 6.7e-75 285.0 271 49.1
Cfa011269 Carpinus fangiana HOM05D007318 ORTHO05D009289 2.0e-74 283.5 194 64.4
TAR636G1683 Trochodendron aralioides HOM05D007318 ORTHO05D009289 4.1e-72 275.8 176 74.4
AUR62043602 Chenopodium quinoa HOM05D007318 ORTHO05D009289 2.7e-68 263.1 329 41.6
ClCG05G021760 Citrullus lanatus HOM05D007318 ORTHO05D009289 1.5e-66 257.3 188 61.7
AagrBONN_evm.TU.Sc2ySwM_368.1913 Anthoceros agrestis HOM05D007318 ORTHO05D009289 4.8e-65 252.3 277 44.8
Thecc.03G070600 Theobroma cacao HOM05D007318 ORTHO05D009289 2.9e-62 243.0 164 68.9
Glyma.02G164100 Glycine max HOM05D007318 ORTHO05D009289 4.2e-61 239.2 179 62.6
Mapoly0020s0170 Marchantia polymorpha HOM05D007318 ORTHO05D009289 1.2e-60 237.7 278 41.7
AUR62042079 Chenopodium quinoa HOM05D007318 ORTHO05D009289 2.3e-59 233.4 181 58.0
Psat6g095000 Pisum sativum HOM05D007318 ORTHO05D009289 1.3e-57 227.6 273 44.0
MSTRG.421 Avicennia marina HOM05D007318 ORTHO05D009289 6.3e-57 225.3 170 60.6
Gohir.A02G015000 Gossypium hirsutum HOM05D007318 ORTHO05D009289 3.0e-51 206.5 179 53.6
Pp3c5_16220 Physcomitrium patens HOM05D007318 ORTHO05D009289 8.8e-51 204.9 229 46.3
SMO172G0015 Selaginella moellendorffii HOM05D007318 ORTHO05D009289 6.3e-49 198.7 247 42.5
PRCOL_00002097 Prasinoderma coloniale HOM05D007318 ORTHO05D009289 5.9e-47 192.2 287 35.5
ClCG00G005260 Citrullus lanatus HOM05D007318 ORTHO05D009289 2.3e-43 180.3 133 60.2
MBI13_g43865_MAGBIO Magnolia biondii HOM05D007318 ORTHO05D009289 5.4e-40 169.1 108 68.5
MCO07G233 Micromonas commoda HOM05D007318 ORTHO05D009289 2.0e-39 167.2 310 33.9
Lsat_1_v5_gn_5_177140 Lactuca sativa HOM05D007318 ORTHO05D009289 1.7e-38 164.1 148 55.4
SEGI_17929 Sequoiadendron giganteum HOM05D007318 ORTHO05D009289 1.2e-36 157.9 130 60.0
PGSC0003DMG400023973 Solanum tuberosum HOM05D007318 ORTHO05D009289 2.7e-31 140.2 83 78.3
Dinv09612 Davidia involucrata HOM05D007318 ORTHO05D009289 2.0e-26 124.0 82 69.5
Cre07.g323750 Chlamydomonas reinhardtii HOM05D007318 ORTHO05D009289 1.1e-21 108.2 247 30.8
SEGI_12071 Sequoiadendron giganteum HOM05D007318 ORTHO05D009289 4.3e-21 106.3 112 43.8
Glyma.20G074100 Glycine max HOM05D007318 ORTHO05D009289 1.1e-13 81.6 84 47.6
AUR62037021 Chenopodium quinoa HOM05D005118 ORTHO05D006038 5.6e-13 79.3 263 25.9
AUR62006198 Chenopodium quinoa HOM05D005118 ORTHO05D006038 7.3e-13 79.0 248 25.8
EL10Ac7g16902 Beta vulgaris HOM05D001354 ORTHO05D007486 1.4e-11 74.7 221 27.1
MBI13_g44208_MAGBIO Magnolia biondii HOM05D007318 ORTHO05D009289 2.4e-11 73.9 37 75.7
TAR636G1493 Trochodendron aralioides HOM05D007318 ORTHO05D009289 3.1e-11 73.6 52 61.5
Phvul.007G152100 Phaseolus vulgaris HOM05D005118 ORTHO05D006038 5.2e-11 72.8 210 27.6
Sc02g0000340 Simmondsia chinensis HOM05D005118 ORTHO05D006038 1.2e-10 71.6 245 24.1
Sabra06G0162900 Salix brachista HOM05D005118 ORTHO05D006038 5.8e-10 69.3 248 25.0
ClCG05G021770 Citrullus lanatus HOM05D007318 ORTHO05D009289 7.6e-10 68.9 39 71.8
Lj6g0000477 Lotus japonicus HOM05D007318 ORTHO05D009289 9.9e-10 68.6 76 46.1
Migut.J01020 Erythranthe guttata HOM05D005118 ORTHO05D006038 2.2e-09 67.4 235 26.0
CARHR145210 Cardamine hirsuta HOM05D005118 ORTHO05D006038 2.9e-09 67.0 244 23.8
Lsat_1_v5_gn_9_20681 Lactuca sativa HOM05D005118 ORTHO05D006038 2.9e-09 67.0 236 24.2
ECA247G3083 Erigeron canadensis HOM05D005118 ORTHO05D006038 3.8e-09 66.6 242 26.4
Nn2g14484 Nelumbo nucifera HOM05D005118 ORTHO05D006038 3.8e-09 66.6 226 28.8
PSO063G5626 Papaver somniferum HOM05D005118 ORTHO05D006038 3.8e-09 66.6 247 24.7
Glyma.13G154600 Glycine max HOM05D005118 ORTHO05D006038 4.9e-09 66.2 225 25.8
GSVIVG01016776001 Vitis vinifera HOM05D005118 ORTHO05D006038 4.9e-09 66.2 275 24.4
Oeu017686.1 Olea europaea HOM05D005118 ORTHO05D006038 6.4e-09 65.9 245 24.9
MD12G1027200 Malus domestica HOM05D005118 ORTHO05D006038 1.1e-08 65.1 248 24.6
AT3G11470 Arabidopsis thaliana HOM05D005118 ORTHO05D006038 1.4e-08 64.7 247 24.7
Os08g0243100 Oryza sativa ssp. japonica HOM05D005118 ORTHO05D006038 1.4e-08 64.7 241 26.1
BcaB06g25621 Brassica carinata HOM05D005118 ORTHO05D006038 1.9e-08 64.3 235 24.3
CAN.G397.66 Capsicum annuum HOM05D005118 ORTHO05D006038 1.9e-08 64.3 230 27.8
Nitab4.5_0001933g0040 Nicotiana tabacum HOM05D005118 ORTHO05D006038 1.9e-08 64.3 257 24.1
Peaxi162Scf00102g00213 Petunia axillaris HOM05D005118 ORTHO05D006038 2.4e-08 63.9 257 26.1
MELO3C011647.2 Cucumis melo HOM05D005118 ORTHO05D006038 3.2e-08 63.5 197 24.9
Solyc09g009960.3 Solanum lycopersicum HOM05D005118 ORTHO05D006038 3.2e-08 63.5 224 26.8
CsaV3_6G003860 Cucumis sativus L. HOM05D005118 ORTHO05D006038 4.2e-08 63.2 197 24.9
PSO782G2273 Papaver somniferum HOM05D005118 ORTHO05D006038 4.2e-08 63.2 247 23.9
Potri.006G211300 Populus trichocarpa HOM05D005118 ORTHO05D006038 4.2e-08 63.2 186 25.3
Prupe.7G104300 Prunus persica HOM05D005118 ORTHO05D006038 4.2e-08 63.2 248 24.6
VMungo1309G0892 Vigna mungo HOM05D005118 ORTHO05D006038 4.2e-08 63.2 227 26.4
Aa31LG3G4790 Aethionema arabicum HOM05D005118 ORTHO05D006038 5.4e-08 62.8 213 25.8
TAR365G0960 Trochodendron aralioides HOM05D005118 ORTHO05D006038 5.4e-08 62.8 243 23.9
DCAR_013399 Daucus carota HOM05D005118 ORTHO05D006038 7.1e-08 62.4 253 22.9
Sed0011362 Sechium edule HOM05D005118 ORTHO05D006038 7.1e-08 62.4 183 25.1
Carub.0005s0168 Capsella rubella HOM05D005118 ORTHO05D006038 9.3e-08 62.0 231 24.7
Dinv21195 Davidia involucrata HOM05D005118 ORTHO05D006038 9.3e-08 62.0 140 28.6
Lalb_Chr10g0096391 Lupinus albus HOM05D005118 ORTHO05D006038 9.3e-08 62.0 240 23.3
Oeu056875.2 Olea europaea HOM05D005118 ORTHO05D006038 9.3e-08 62.0 243 23.9
BraA05t22581Z Brassica rapa HOM05D005118 ORTHO05D006038 1.2e-07 61.6 215 25.1
CiPaw.09G015400 Carya illinoinensis HOM05D005118 ORTHO05D006038 1.2e-07 61.6 248 24.6
THA.LOC104816589 Tarenaya hassleriana HOM05D005118 ORTHO05D006038 1.6e-07 61.2 226 24.8
Ca_00895_v3 Cicer arietinum L. HOM05D005118 ORTHO05D006038 2.1e-07 60.8 221 24.9
AL3G23010 Arabidopsis lyrata HOM05D005118 ORTHO05D006038 2.7e-07 60.5 198 25.3
COL.COLO4_29702 Corchorus olitorius HOM05D005118 ORTHO05D006038 2.7e-07 60.5 272 25.4
FAN02G2546 Fragaria x ananassa HOM05D005118 ORTHO05D006038 2.7e-07 60.5 244 24.6
SalBow3G3316 Salvia bowleyana HOM05D005118 ORTHO05D006038 2.7e-07 60.5 246 24.4
SGA_v2.0_scaffold31G12903 Striga asiatica HOM05D005118 ORTHO05D006038 2.7e-07 60.5 157 29.9
ClCG08G004490 Citrullus lanatus HOM05D005118 ORTHO05D006038 3.5e-07 60.1 197 24.9
Ciclev10011946m.g Citrus clementina HOM05D005118 ORTHO05D006038 3.5e-07 60.1 246 24.8
FvH4_6g19140 Fragaria vesca HOM05D005118 ORTHO05D006038 3.5e-07 60.1 245 25.3
FAN14G1754 Fragaria x ananassa HOM05D005118 ORTHO05D006038 3.5e-07 60.1 245 25.3
HanXRQChr08g0212801 Helianthus annuus HOM05D005118 ORTHO05D006038 3.5e-07 60.1 238 23.9
Lj6g0000791 Lotus japonicus HOM05D005118 ORTHO05D006038 3.5e-07 60.1 246 22.8
Lj6g0018590 Lotus japonicus HOM05D005118 ORTHO05D006038 3.5e-07 60.1 246 22.8
A05p37870 Brassica napus HOM05D005118 ORTHO05D006038 4.6e-07 59.7 216 24.1
BolC5t33871H Brassica oleracea HOM05D005118 ORTHO05D006038 4.6e-07 59.7 238 24.8
Lj2C139G10 Lonicera japonica HOM05D005118 ORTHO05D006038 4.6e-07 59.7 173 27.7
Aa31LG3G4830 Aethionema arabicum HOM05D005118 ORTHO05D006038 6.0e-07 59.3 239 23.4
Psat6g079520 Pisum sativum HOM05D005118 ORTHO05D006038 6.0e-07 59.3 230 23.5
Sopen09g004710 Solanum pennellii HOM05D005118 ORTHO05D006038 6.0e-07 59.3 226 27.0
arahy.Tifrunner.gnm1.ann1.72V09J Arachis hypogaea HOM05D005118 ORTHO05D006038 7.8e-07 58.9 221 24.0
arahy.Tifrunner.gnm1.ann1.W1QNQS Arachis hypogaea HOM05D005118 ORTHO05D006038 7.8e-07 58.9 221 24.0
Duzib093G2169 Durio zibethinus HOM05D005118 ORTHO05D006038 1.0e-06 58.5 181 26.5
Thhalv10021266m.g Eutrema salsugineum HOM05D005118 ORTHO05D006038 1.0e-06 58.5 212 24.1
FAN09G1525 Fragaria x ananassa HOM05D005118 ORTHO05D006038 1.0e-06 58.5 244 24.2
MBI14_g17373_MAGBIO Magnolia biondii HOM05D005118 ORTHO05D006038 1.0e-06 58.5 231 24.7
Medtr1g059790 Medicago truncatula HOM05D005118 ORTHO05D006038 1.0e-06 58.5 240 23.3
Potri.016G078400 Populus trichocarpa HOM05D005118 ORTHO05D006038 1.0e-06 58.5 139 28.8
RcHm_v2.0_Chr3g0474251 Rosa chinensis HOM05D005118 ORTHO05D006038 1.0e-06 58.5 247 24.3
Sp3g09700 Schrenkiella parvula HOM05D005118 ORTHO05D006038 1.0e-06 58.5 242 24.0
Atru.chr8.1478 Acer truncatum HOM05D005118 ORTHO05D006038 1.3e-06 58.2 241 24.1
CANSAT64G1535 Cannabis sativa HOM05D005118 ORTHO05D006038 2.3e-06 57.4 181 24.9
FAN05G3536 Fragaria x ananassa HOM05D005118 ORTHO05D006038 2.3e-06 57.4 245 25.3
Sp3g13570 Schrenkiella parvula HOM05D005118 ORTHO05D006038 2.3e-06 57.4 193 26.4
C05p51840 Brassica napus HOM05D005118 ORTHO05D006038 3.9e-06 56.6 193 24.9
Thhalv10018973m.g Eutrema salsugineum HOM05D005118 ORTHO05D006038 3.9e-06 56.6 265 24.9
Gohir.A01G205500 Gossypium hirsutum HOM05D005118 ORTHO05D006038 5.1e-06 56.2 183 25.7
Gorai.002G239100 Gossypium raimondii HOM05D005118 ORTHO05D006038 6.6e-06 55.8 183 25.7
Rhsim03G0072700 Rhododendron simsii HOM05D005118 ORTHO05D006038 6.6e-06 55.8 245 24.1
TWI77G0553 Tripterygium wilfordii HOM05D005118 ORTHO05D006038 6.6e-06 55.8 183 25.7
CSS0000835 Camellia sinensis var. sinensis HOM05D005118 ORTHO05D006038 8.7e-06 55.5 187 24.1
Gohir.D01G195000 Gossypium hirsutum HOM05D005118 ORTHO05D006038 8.7e-06 55.5 183 25.7


User provided reference genes

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