Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Sabra10G0182600 Salix brachista HOM05D005926 ORTHO05D007001 0.0e+00 1362.8 747 100.0
Potri.008G025000 Populus trichocarpa HOM05D005926 ORTHO05D007001 3.0e-222 775.8 776 62.6
Sabra08G0016800 Salix brachista HOM05D005926 ORTHO05D007001 1.1e-219 767.3 756 63.2
Manes.07G090100 Manihot esculenta HOM05D005926 ORTHO05D007001 3.1e-166 589.7 765 50.2
QL04p042256 Quercus lobata HOM05D005926 ORTHO05D007001 6.9e-134 482.3 771 44.7
CiPaw.14G029200 Carya illinoinensis HOM05D005926 ORTHO05D007001 1.8e-129 467.6 768 42.8
Ciclev10030805m.g Citrus clementina HOM05D005926 ORTHO05D007001 1.5e-128 464.5 835 41.7
Thecc.10G111000 Theobroma cacao HOM05D005926 ORTHO05D007001 5.7e-120 436.0 796 40.8
Atru.chr12.975 Acer truncatum HOM05D005926 ORTHO05D007001 4.1e-118 429.9 791 42.4
Gohir.A05G398500 Gossypium hirsutum HOM05D005926 ORTHO05D007001 3.5e-117 426.8 794 41.4
Gohir.D04G017400 Gossypium hirsutum HOM05D005926 ORTHO05D007001 1.0e-116 425.2 790 41.4
Gorai.012G020100 Gossypium raimondii HOM05D005926 ORTHO05D007001 1.9e-115 421.0 796 41.5
Duzib106G0448 Durio zibethinus HOM05D005926 ORTHO05D007001 7.2e-115 419.1 803 40.6
Prupe.2G085400 Prunus persica HOM05D005926 ORTHO05D007001 6.8e-113 412.5 823 41.6
Duzib128G1763 Durio zibethinus HOM05D005926 ORTHO05D007001 2.8e-111 407.1 800 39.9
TWI63G0673 Tripterygium wilfordii HOM05D005926 ORTHO05D007001 3.7e-111 406.8 768 42.1
CANSAT56G4130 Cannabis sativa HOM05D005926 ORTHO05D007001 8.3e-111 405.6 766 41.0
COL.COLO4_06813 Corchorus olitorius HOM05D005926 ORTHO05D007001 8.3e-111 405.6 786 39.9
GSVIVG01034734001 Vitis vinifera HOM05D005926 ORTHO05D007001 2.4e-110 404.1 750 43.3
FAN10G2760 Fragaria x ananassa HOM05D005926 ORTHO05D007001 5.9e-109 399.4 695 42.0
RcHm_v2.0_Chr1g0333121 Rosa chinensis HOM05D005926 ORTHO05D007001 1.6e-106 391.3 913 36.8
FvH4_7g05860 Fragaria vesca HOM05D005926 ORTHO05D007001 1.2e-104 385.2 695 41.3
Dinv30648 Davidia involucrata HOM05D005926 ORTHO05D007001 5.7e-104 382.9 783 41.5
MD07G1068100 Malus domestica HOM05D005926 ORTHO05D007001 1.7e-103 381.3 841 38.5
MD02G1248000 Malus domestica HOM05D005926 ORTHO05D007001 2.4e-102 377.5 847 38.8
FAN03G1852 Fragaria x ananassa HOM05D005926 ORTHO05D007001 8.6e-100 369.0 669 41.7
TAR623G1319 Trochodendron aralioides HOM05D005926 ORTHO05D007001 1.6e-98 364.8 787 39.4
Phvul.007G104500 Phaseolus vulgaris HOM05D005926 ORTHO05D007001 1.2e-96 358.6 762 37.7
Lj5g0002236 Lotus japonicus HOM05D005926 ORTHO05D007001 1.1e-94 352.1 761 38.9
Cpa.g.sc19.23 Carica papaya HOM05D005926 ORTHO05D007001 3.2e-94 350.5 914 33.7
ClCG08G008140 Citrullus lanatus HOM05D005926 ORTHO05D007001 7.8e-93 345.9 778 38.9
Glyma.10G202600 Glycine max HOM05D005926 ORTHO05D007001 1.3e-92 345.1 751 37.4
CsaV3_6G004110 Cucumis sativus L. HOM05D005926 ORTHO05D007001 2.3e-92 344.4 780 39.4
Ca_10497_v3 Cicer arietinum L. HOM05D005926 ORTHO05D007001 1.6e-90 338.2 749 37.5
Cc02_g10060 Coffea canephora HOM05D005926 ORTHO05D007001 1.4e-89 335.1 785 37.6
Psat6g176680 Pisum sativum HOM05D005926 ORTHO05D007001 1.8e-89 334.7 733 36.8
Eucgr.G02709 Eucalyptus grandis HOM05D005926 ORTHO05D007001 2.6e-88 330.9 759 38.1
Medtr1g492840 Medicago truncatula HOM05D005926 ORTHO05D007001 7.5e-88 329.3 761 37.5
MELO3C019887.2 Cucumis melo HOM05D005926 ORTHO05D007001 8.3e-87 325.9 801 37.7
Glyma.20G187800 Glycine max HOM05D005926 ORTHO05D007001 2.7e-85 320.9 761 36.0
TAR636G3019 Trochodendron aralioides HOM05D005926 ORTHO05D007001 3.0e-84 317.4 710 37.9
Rhsim03G0105700 Rhododendron simsii HOM05D005926 ORTHO05D007001 5.6e-83 313.2 801 37.3
TPR.G2562 Trifolium pratense HOM05D005926 ORTHO05D007001 3.6e-82 310.5 735 36.2
CSS0031564 Camellia sinensis var. sinensis HOM05D005926 ORTHO05D007001 5.2e-81 306.6 803 35.4
CSS0031315 Camellia sinensis var. sinensis HOM05D005926 ORTHO05D007001 6.8e-81 306.2 784 37.1
vmacro07227 Vaccinium macrocarpon HOM05D005926 ORTHO05D007001 4.4e-80 303.5 789 35.2
Actinidia18581 Actinidia chinensis HOM05D005926 ORTHO05D007001 5.8e-80 303.1 804 34.3
TAR369G1114 Trochodendron aralioides HOM05D005926 ORTHO05D007001 5.8e-80 303.1 771 38.5
Lj2C28T9 Lonicera japonica HOM05D005926 ORTHO05D007001 4.9e-79 300.1 708 38.7
VMungo0720G0267 Vigna mungo HOM05D005926 ORTHO05D007001 2.3e-76 291.2 711 34.3
Lalb_Chr03g0036371 Lupinus albus HOM05D005926 ORTHO05D007001 4.3e-75 287.0 759 35.2
CSS0037332 Camellia sinensis var. sinensis HOM05D005926 ORTHO05D007001 1.8e-73 281.6 791 33.8
Nn2g14047 Nelumbo nucifera HOM05D005926 ORTHO05D007001 2.2e-71 274.6 751 34.6
PGR142G4330 Punica granatum HOM05D005926 ORTHO05D007001 2.4e-70 271.2 750 35.9
Haze_02593 Corylus avellana HOM05D005926 ORTHO05D007001 1.1e-67 262.3 293 55.6
Nn6g35019 Nelumbo nucifera HOM05D005926 ORTHO05D007001 1.5e-67 261.9 733 34.1
Sed0009709 Sechium edule HOM05D005926 ORTHO05D007001 1.5e-67 261.9 761 33.5
CSS0015422 Camellia sinensis var. sinensis HOM05D005926 ORTHO05D007001 1.2e-64 252.3 838 32.0
Hma1.2p1_0010F.1_g007030 Hydrangea macrophylla HOM05D005926 ORTHO05D007001 1.5e-64 251.9 407 47.4
Peaxi162Scf00004g00119 Petunia axillaris HOM05D005926 ORTHO05D007001 4.4e-64 250.4 790 33.0
Actinidia28534 Actinidia chinensis HOM05D005926 ORTHO05D007001 1.3e-63 248.8 833 31.0
Aqoxy4G02869 Aquilegia oxysepala HOM05D005926 ORTHO05D007001 5.4e-62 243.4 764 32.6
Nitab4.5_0001027g0040 Nicotiana tabacum HOM05D005926 ORTHO05D007001 2.1e-61 241.5 740 33.8
arahy.Tifrunner.gnm1.ann1.J9ASUV Arachis hypogaea HOM05D005926 ORTHO05D007001 1.0e-60 239.2 428 45.8
Nitab4.5_0003396g0030 Nicotiana tabacum HOM05D005926 ORTHO05D007001 1.0e-60 239.2 707 33.2
Sopen05g033810 Solanum pennellii HOM05D005926 ORTHO05D007001 3.3e-59 234.2 774 32.9
SalBow6G1645 Salvia bowleyana HOM05D005926 ORTHO05D007001 1.6e-58 231.9 766 33.6
PGSC0003DMG400023487 Solanum tuberosum HOM05D005926 ORTHO05D007001 5.3e-57 226.9 773 33.1
Sed0000046 Sechium edule HOM05D005926 ORTHO05D007001 4.4e-56 223.8 710 32.7
DCAR_014349 Daucus carota HOM05D005926 ORTHO05D007001 7.6e-56 223.0 719 34.1
Sc06g0002210 Simmondsia chinensis HOM05D005926 ORTHO05D007001 4.2e-54 217.2 414 43.2
Migut.F00893 Erythranthe guttata HOM05D005926 ORTHO05D007001 9.3e-54 216.1 406 46.3
ECA232G4290 Erigeron canadensis HOM05D005926 ORTHO05D007001 2.7e-53 214.5 687 34.8
Solyc05g055360.4 Solanum lycopersicum HOM05D005926 ORTHO05D007001 7.9e-53 213.0 774 32.0
Aqoxy2G01361 Aquilegia oxysepala HOM05D005926 ORTHO05D007001 1.5e-51 208.8 754 33.0
HanXRQChr05g0147041 Helianthus annuus HOM05D005926 ORTHO05D007001 2.1e-50 204.9 332 47.6
CAN.G1550.12 Capsicum annuum HOM05D005926 ORTHO05D007001 6.2e-50 203.4 700 31.0
Thhalv10010215m.g Eutrema salsugineum HOM05D005926 ORTHO05D007001 1.1e-49 202.6 703 31.4
AL5G32830 Arabidopsis lyrata HOM05D005926 ORTHO05D007001 1.8e-49 201.8 727 31.6
Nitab4.5_0012334g0010 Nicotiana tabacum HOM05D005926 ORTHO05D007001 3.1e-49 201.1 745 32.5
CARHR161990 Cardamine hirsuta HOM05D005926 ORTHO05D007001 4.2e-46 190.7 667 30.4
THA.LOC104814724 Tarenaya hassleriana HOM05D005926 ORTHO05D007001 1.2e-45 189.1 357 41.7
Lsat_1_v5_gn_6_90261 Lactuca sativa HOM05D005926 ORTHO05D007001 1.6e-45 188.7 704 32.5
Dinv20819 Davidia involucrata HOM05D005926 ORTHO05D007001 4.6e-45 187.2 415 37.6
PGSC0003DMG400027309 Solanum tuberosum HOM05D005926 ORTHO05D007001 6.0e-45 186.8 422 38.6
AT3G52240 Arabidopsis thaliana HOM05D005926 ORTHO05D007001 2.3e-44 184.9 692 30.1
Carub.0005s1860 Capsella rubella HOM05D005926 ORTHO05D007001 2.3e-44 184.9 711 30.8
Nitab4.5_0002878g0030 Nicotiana tabacum HOM05D005926 ORTHO05D007001 5.1e-44 183.7 405 40.7
EL10Ac4g08669 Beta vulgaris HOM05D005926 ORTHO05D007001 6.7e-44 183.3 763 28.3
Sopen11g003350 Solanum pennellii HOM05D005926 ORTHO05D007001 6.7e-44 183.3 396 39.4
SGA_v2.0_scaffold62G21348 Striga asiatica HOM05D005926 ORTHO05D007001 6.7e-44 183.3 758 31.5
Sp5g10020 Schrenkiella parvula HOM05D005926 ORTHO05D007001 8.7e-44 183.0 712 28.8
Haze_02594 Corylus avellana HOM05D005926 ORTHO05D007001 1.5e-43 182.2 478 33.3
Solyc11g007510.2 Solanum lycopersicum HOM05D005926 ORTHO05D007001 2.5e-43 181.4 420 38.1
arahy.Tifrunner.gnm1.ann1.9BC44J Arachis hypogaea HOM05D005926 ORTHO05D007001 8.1e-42 176.4 690 31.4
A09p45300 Brassica napus HOM05D005926 ORTHO05D007001 8.1e-42 176.4 766 29.6
C08p27480 Brassica napus HOM05D005926 ORTHO05D007001 6.9e-41 173.3 766 29.6
BolC8t50365H Brassica oleracea HOM05D005926 ORTHO05D007001 6.9e-41 173.3 766 29.6
Ah.04g163700 Amaranthus hybridus HOM05D005926 ORTHO05D007001 1.2e-40 172.6 728 28.6
Aa31LG10G7340 Aethionema arabicum HOM05D005926 ORTHO05D007001 2.6e-40 171.4 346 40.5
BcaB02g08582 Brassica carinata HOM05D005926 ORTHO05D007001 2.6e-40 171.4 694 30.1
BraA09t39993Z Brassica rapa HOM05D005926 ORTHO05D007001 7.6e-40 169.9 768 30.1
AUR62041545 Chenopodium quinoa HOM05D005926 ORTHO05D007001 1.0e-39 169.5 435 37.2
PSO384G0761 Papaver somniferum HOM05D005926 ORTHO05D007001 2.1e-37 161.8 458 35.6
BcaC07g39594 Brassica carinata HOM05D005926 ORTHO05D007001 5.1e-36 157.1 737 29.2
PSO339G4155 Papaver somniferum HOM05D005926 ORTHO05D007001 5.1e-36 157.1 453 34.4
C04p40700 Brassica napus HOM05D005926 ORTHO05D007001 1.1e-35 156.0 694 28.8
BolC4t25653H Brassica oleracea HOM05D005926 ORTHO05D007001 2.5e-35 154.8 684 28.4
PSO443G0029 Papaver somniferum HOM05D005926 ORTHO05D007001 2.5e-35 154.8 403 38.5
BcaC02g09269 Brassica carinata HOM05D005926 ORTHO05D007001 3.7e-34 151.0 694 28.2
A04p07120 Brassica napus HOM05D005926 ORTHO05D007001 6.2e-34 150.2 777 29.2
BraA04t16409Z Brassica rapa HOM05D005926 ORTHO05D007001 5.3e-33 147.1 674 28.6
CDE04G2986 Ceratophyllum demersum HOM05D005926 ORTHO05D007001 1.1e-30 139.4 336 37.8
Os05g0445800 Oryza sativa ssp. japonica HOM05D005926 ORTHO05D007001 2.5e-30 138.3 664 28.8
GSVIVG01031385001 Vitis vinifera HOM05D005926 ORTHO05D007001 9.3e-30 136.3 685 28.5
Zm00001eb289020 Zea mays HOM05D005926 ORTHO05D007001 1.4e-25 122.5 741 28.2
Os05g0446500 Oryza sativa ssp. japonica HOM05D005926 ORTHO05D007001 9.0e-25 119.8 675 27.6
Zm00001eb147390 Zea mays HOM05D005926 ORTHO05D007001 3.4e-24 117.9 370 34.3
ATR0820G003 Amborella trichopoda HOM05D005926 ORTHO05D007001 4.5e-24 117.5 363 35.0
arahy.Tifrunner.gnm1.ann1.L8M84U Arachis hypogaea HOM05D005926 ORTHO05D007001 1.2e-21 109.4 274 39.1
arahy.Tifrunner.gnm1.ann1.UA3HQT Arachis hypogaea HOM05D005926 ORTHO05D007001 1.2e-21 109.4 274 39.4
unitig_0.g760 Utricularia gibba HOM05D005926 ORTHO05D007001 6.7e-20 103.6 374 33.7
HPP92_002057 Vanilla planifolia HOM05D005926 ORTHO05D007001 6.7e-20 103.6 210 41.0
Os04g0646050 Oryza sativa ssp. japonica HOM05D005926 ORTHO05D007001 9.1e-17 93.2 163 44.8
Oeu026567.1 Olea europaea HOM05D005926 ORTHO05D007001 4.5e-16 90.9 227 34.8
SEGI_23583 Sequoiadendron giganteum HOM05D005926 ORTHO05D007001 5.0e-15 87.4 370 30.3
AagrBONN_evm.TU.Sc2ySwM_228.4811 Anthoceros agrestis HOM05D005926 ORTHO05D007001 1.1e-06 59.7 320 30.6


User provided reference genes

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