Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Sabra10G0182100 Salix brachista HOM05D007680 ORTHO05D009702 2.4e-83 312.4 192 100.0
Potri.010G234900 Populus trichocarpa HOM05D007680 ORTHO05D009702 6.5e-44 181.4 139 89.9
Potri.008G025700 Populus trichocarpa HOM05D007680 ORTHO05D009702 4.7e-34 148.7 142 62.0
Dinv30655 Davidia involucrata HOM05D007680 ORTHO05D009702 2.3e-17 93.2 85 63.5
CSS0013494 Camellia sinensis var. sinensis HOM05D007680 ORTHO05D009702 6.8e-17 91.7 61 70.5
CiPaw.14G028600 Carya illinoinensis HOM05D007680 ORTHO05D009702 8.9e-17 91.3 61 77.0
Prupe.2G086600 Prunus persica HOM05D007680 ORTHO05D009702 1.5e-16 90.5 62 75.8
MELO3C012366.2 Cucumis melo HOM05D007680 ORTHO05D009702 2.6e-16 89.7 61 72.1
CsaV3_5G035650 Cucumis sativus L. HOM05D007680 ORTHO05D009702 2.6e-16 89.7 61 72.1
Hma1.2p1_0026F.1_g016760 Hydrangea macrophylla HOM05D007680 ORTHO05D009702 3.4e-16 89.4 62 71.0
Manes.05G202400 Manihot esculenta HOM05D007680 ORTHO05D009702 3.4e-16 89.4 61 72.1
ClCG05G021580 Citrullus lanatus HOM05D007680 ORTHO05D009702 5.7e-16 88.6 61 70.5
HanXRQChr08g0217901 Helianthus annuus HOM05D007680 ORTHO05D009702 9.8e-16 87.8 53 75.5
Oeu060261.1 Olea europaea HOM05D007680 ORTHO05D009702 9.8e-16 87.8 58 69.0
Sed0005690 Sechium edule HOM05D007680 ORTHO05D009702 9.8e-16 87.8 61 68.9
SalBow6G1777 Salvia bowleyana HOM05D007680 ORTHO05D009702 1.3e-15 87.4 58 72.4
MD07G1087200 Malus domestica HOM05D007680 ORTHO05D009702 2.2e-15 86.7 61 75.4
vmacro10277 Vaccinium macrocarpon HOM05D007680 ORTHO05D009702 2.8e-15 86.3 53 75.5
Ciclev10032885m.g Citrus clementina HOM05D007680 ORTHO05D009702 6.3e-15 85.1 61 70.5
Aqoxy2G01382 Aquilegia oxysepala HOM05D007680 ORTHO05D009702 1.1e-14 84.3 60 66.7
Cpa.g.sc128.47 Carica papaya HOM05D007680 ORTHO05D009702 1.1e-14 84.3 149 56.4
Haze_02610 Corylus avellana HOM05D007680 ORTHO05D009702 1.1e-14 84.3 149 49.7
Migut.F01656 Erythranthe guttata HOM05D007680 ORTHO05D009702 1.1e-14 84.3 61 68.9
QL04p041248 Quercus lobata HOM05D007680 ORTHO05D009702 1.8e-14 83.6 61 72.1
Sopen11g003400 Solanum pennellii HOM05D007680 ORTHO05D009702 1.8e-14 83.6 53 73.6
PGSC0003DMG400027341 Solanum tuberosum HOM05D007680 ORTHO05D009702 1.8e-14 83.6 53 73.6
Atru.chr12.970 Acer truncatum HOM05D007680 ORTHO05D009702 2.4e-14 83.2 61 67.2
Actinidia31090 Actinidia chinensis HOM05D007680 ORTHO05D009702 2.4e-14 83.2 52 73.1
Cfa011226 Carpinus fangiana HOM05D007680 ORTHO05D009702 3.1e-14 82.8 148 50.0
Hund17353 Selenicereus undatus HOM05D007680 ORTHO05D009702 3.1e-14 82.8 61 62.3
EL10Ac2g03857 Beta vulgaris HOM05D007680 ORTHO05D009702 9.2e-14 81.3 57 61.4
FAN03G2755 Fragaria x ananassa HOM05D007680 ORTHO05D009702 9.2e-14 81.3 61 65.6
FAN06G0858 Fragaria x ananassa HOM05D007680 ORTHO05D009702 9.2e-14 81.3 61 65.6
CDE08G1572 Ceratophyllum demersum HOM05D007680 ORTHO05D009702 1.2e-13 80.9 61 68.9
Duzib128G1419 Durio zibethinus HOM05D007680 ORTHO05D009702 1.2e-13 80.9 144 41.7
Thecc.10G109800 Theobroma cacao HOM05D007680 ORTHO05D009702 1.2e-13 80.9 147 39.5
Thecc.K0008600 Theobroma cacao HOM05D007680 ORTHO05D009702 1.2e-13 80.9 147 39.5
AUR62043943 Chenopodium quinoa HOM05D000002 ORTHO05D000001 1.6e-13 80.5 66 57.6
Lj2C27T21 Lonicera japonica HOM05D007680 ORTHO05D009702 2.0e-13 80.1 56 64.3
TAR636G0370 Trochodendron aralioides HOM05D007680 ORTHO05D009702 2.0e-13 80.1 61 67.2
MBI17_g11658_MAGBIO Magnolia biondii HOM05D007680 ORTHO05D009702 2.7e-13 79.7 61 70.5
RcHm_v2.0_Chr1g0333251 Rosa chinensis HOM05D007680 ORTHO05D009702 2.7e-13 79.7 49 75.5
Gohir.A05G288200 Gossypium hirsutum HOM05D007680 ORTHO05D009702 3.5e-13 79.3 145 42.8
CDE02G0611 Ceratophyllum demersum HOM05D007680 ORTHO05D009702 4.5e-13 79.0 61 65.6
Ah.10g034230 Amaranthus hybridus HOM05D007680 ORTHO05D009702 5.9e-13 78.6 61 55.7
Gohir.D05G289400 Gossypium hirsutum HOM05D007680 ORTHO05D009702 5.9e-13 78.6 145 40.7
Gorai.009G304500 Gossypium raimondii HOM05D007680 ORTHO05D009702 7.8e-13 78.2 145 40.7
Psat6g094320 Pisum sativum HOM05D007680 ORTHO05D009702 1.0e-12 77.8 57 68.4
unitig_899.g15034 Utricularia gibba HOM05D007680 ORTHO05D009702 1.0e-12 77.8 52 73.1
Lj6g0009049 Lotus japonicus HOM05D007680 ORTHO05D009702 1.3e-12 77.4 132 43.2
TAR636G3254 Trochodendron aralioides HOM05D007680 ORTHO05D009702 1.3e-12 77.4 61 65.6
GSVIVG01034708001 Vitis vinifera HOM05D007680 ORTHO05D009702 1.7e-12 77.0 61 62.3
ATR0820G188 Amborella trichopoda HOM05D007680 ORTHO05D009702 2.9e-12 76.3 59 69.5
PGR044G0006 Punica granatum HOM05D007680 ORTHO05D009702 3.8e-12 75.9 151 39.1
Sc20g0001300 Simmondsia chinensis HOM05D007680 ORTHO05D009702 3.8e-12 75.9 48 70.8
TWI38G2267 Tripterygium wilfordii HOM05D007680 ORTHO05D009702 3.8e-12 75.9 61 67.2
Nn2g14013 Nelumbo nucifera HOM05D007680 ORTHO05D009702 5.0e-12 75.5 61 60.7
TAR636G2061 Trochodendron aralioides HOM05D007680 ORTHO05D009702 5.0e-12 75.5 53 67.9
Lalb_Chr01g0010321 Lupinus albus HOM05D007680 ORTHO05D009702 6.6e-12 75.1 55 67.3
Phvul.007G245300 Phaseolus vulgaris HOM05D007680 ORTHO05D009702 6.6e-12 75.1 124 40.3
Medtr1g050700 Medicago truncatula HOM05D007680 ORTHO05D009702 1.5e-11 73.9 58 62.1
VMungo0720G1600 Vigna mungo HOM05D007680 ORTHO05D009702 2.5e-11 73.2 56 66.1
COL.COLO4_33896 Corchorus olitorius HOM05D007680 ORTHO05D009702 4.3e-11 72.4 141 46.8
arahy.Tifrunner.gnm1.ann1.VK4BH4 Arachis hypogaea HOM05D007680 ORTHO05D009702 5.6e-11 72.0 53 62.3
Thhalv10026523m.g Eutrema salsugineum HOM05D007680 ORTHO05D009702 5.6e-11 72.0 50 72.0
Sp7g35810 Schrenkiella parvula HOM05D007680 ORTHO05D009702 9.5e-11 71.2 50 72.0
Glyma.02G165700 Glycine max HOM05D007680 ORTHO05D009702 1.6e-10 70.5 56 60.7
THA.LOC104824894 Tarenaya hassleriana HOM05D007680 ORTHO05D009702 3.6e-10 69.3 50 68.0
THA.LOC104824900 Tarenaya hassleriana HOM05D007680 ORTHO05D009702 3.6e-10 69.3 50 68.0
Glyma.10G104651 Glycine max HOM05D007680 ORTHO05D009702 4.7e-10 68.9 147 55.1
AL7G12370 Arabidopsis lyrata HOM05D007680 ORTHO05D009702 6.1e-10 68.6 50 70.0
AT4G40045 Arabidopsis thaliana HOM05D007680 ORTHO05D009702 6.1e-10 68.6 50 70.0
MD07G1069500 Malus domestica HOM05D007680 ORTHO05D009702 6.1e-10 68.6 60 65.0
TPR.G305 Trifolium pratense HOM05D007680 ORTHO05D009702 1.4e-09 67.4 50 68.0
TPR.G7612 Trifolium pratense HOM05D007680 ORTHO05D009702 1.4e-09 67.4 50 68.0
Lsat_1_v5_gn_2_102521 Lactuca sativa HOM05D007680 ORTHO05D009702 2.3e-09 66.6 52 59.6
Carub.0007s0203 Capsella rubella HOM05D007680 ORTHO05D009702 3.1e-09 66.2 50 68.0
CARHR246610 Cardamine hirsuta HOM05D007680 ORTHO05D009702 4.0e-09 65.9 50 68.0
PSO384G1244 Papaver somniferum HOM05D007680 ORTHO05D009702 6.8e-09 65.1 57 57.9
Lalb_Chr19g0129271 Lupinus albus HOM05D007680 ORTHO05D009702 8.9e-09 64.7 55 60.0
arahy.Tifrunner.gnm1.ann1.UIS3VC Arachis hypogaea HOM05D007680 ORTHO05D009702 4.4e-08 62.4 63 52.4
A01p00970 Brassica napus HOM05D007680 ORTHO05D009702 5.8e-08 62.0 52 65.4
BolC1t00107H Brassica oleracea HOM05D007680 ORTHO05D009702 5.8e-08 62.0 56 62.5
BraA01t00095Z Brassica rapa HOM05D007680 ORTHO05D009702 5.8e-08 62.0 52 65.4
C01p01090 Brassica napus HOM05D007680 ORTHO05D009702 1.3e-07 60.8 56 60.7
SEGI_03872 Sequoiadendron giganteum HOM05D007680 ORTHO05D009702 1.7e-07 60.5 42 64.3
SGA_v2.0_scaffold10G05320 Striga asiatica HOM05D007680 ORTHO05D009702 1.7e-07 60.5 43 60.5
SGA_v2.0_scaffold154G37188 Striga asiatica HOM05D004374 ORTHO05D005430 1.4e-06 57.4 35 68.6


User provided reference genes

Program Settings