Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Sabra10G0181200 Salix brachista HOM05D004192 ORTHO05D004917 0.0e+00 2162.5 1076 100.0
Potri.010G233600 Populus trichocarpa HOM05D004192 ORTHO05D004917 0.0e+00 1511.5 936 84.4
Potri.008G026900 Populus trichocarpa HOM05D004192 ORTHO05D004917 0.0e+00 1372.5 938 76.9
Sabra08G0018400 Salix brachista HOM05D004192 ORTHO05D004917 0.0e+00 1346.3 966 73.9
COL.COLO4_34171 Corchorus olitorius HOM05D004192 ORTHO05D004917 0.0e+00 1223.0 937 67.8
Thecc.10G097700 Theobroma cacao HOM05D004192 ORTHO05D004917 0.0e+00 1214.9 934 67.8
Dinv31284 Davidia involucrata HOM05D004192 ORTHO05D004917 0.0e+00 1209.1 935 68.1
Gorai.008G097500 Gossypium raimondii HOM05D004192 ORTHO05D004917 0.0e+00 1191.0 934 66.4
TWI38G0502 Tripterygium wilfordii HOM05D004192 ORTHO05D004917 0.0e+00 1186.0 932 67.2
Gohir.A12G088900 Gossypium hirsutum HOM05D004192 ORTHO05D004917 0.0e+00 1184.9 934 66.3
CANSAT56G0904 Cannabis sativa HOM05D004192 ORTHO05D004917 0.0e+00 1178.7 935 65.8
CSS0020257 Camellia sinensis var. sinensis HOM05D004192 ORTHO05D004917 0.0e+00 1177.9 938 66.0
PGR044G0968 Punica granatum HOM05D004192 ORTHO05D004917 0.0e+00 1177.5 938 66.3
FAN10G1549 Fragaria x ananassa HOM05D004192 ORTHO05D004917 0.0e+00 1172.9 934 66.4
FvH4_7g06400 Fragaria vesca HOM05D004192 ORTHO05D004917 0.0e+00 1171.0 934 66.4
Eucgr.J01026 Eucalyptus grandis HOM05D004192 ORTHO05D004917 0.0e+00 1161.7 940 65.0
FAN01G1656 Fragaria x ananassa HOM05D004192 ORTHO05D004917 0.0e+00 1161.7 942 65.5
MD07G1072600 Malus domestica HOM05D004192 ORTHO05D004917 0.0e+00 1158.7 939 65.7
FAN06G5118 Fragaria x ananassa HOM05D004192 ORTHO05D004917 0.0e+00 1157.9 962 64.4
Gohir.D01G118800 Gossypium hirsutum HOM05D004192 ORTHO05D004917 0.0e+00 1156.7 935 65.5
Duzib114G0707 Durio zibethinus HOM05D004192 ORTHO05D004917 0.0e+00 1156.4 898 67.5
Gorai.002G144900 Gossypium raimondii HOM05D004192 ORTHO05D004917 0.0e+00 1154.4 935 65.3
Gohir.A01G129200 Gossypium hirsutum HOM05D004192 ORTHO05D004917 0.0e+00 1154.0 935 65.5
Duzib128G0631 Durio zibethinus HOM05D004192 ORTHO05D004917 0.0e+00 1152.1 937 65.1
Cc02_g10300 Coffea canephora HOM05D004192 ORTHO05D004917 0.0e+00 1151.0 933 64.4
MD02G1244600 Malus domestica HOM05D004192 ORTHO05D004917 0.0e+00 1145.2 944 65.1
RcHm_v2.0_Chr1g0334491 Rosa chinensis HOM05D004192 ORTHO05D004917 0.0e+00 1139.8 933 65.2
Gohir.D12G087300 Gossypium hirsutum HOM05D004192 ORTHO05D004917 0.0e+00 1137.5 934 64.2
Manes.10G054700 Manihot esculenta HOM05D004192 ORTHO05D004917 0.0e+00 1132.5 851 69.7
CsaV3_2G032910 Cucumis sativus L. HOM05D004192 ORTHO05D004917 0.0e+00 1131.3 944 64.3
ClCG08G008030 Citrullus lanatus HOM05D004192 ORTHO05D004917 0.0e+00 1129.0 941 64.3
Nn6g35085 Nelumbo nucifera HOM05D004192 ORTHO05D004917 0.0e+00 1123.6 916 64.4
Prupe.2G090700 Prunus persica HOM05D004192 ORTHO05D004917 0.0e+00 1122.5 845 68.6
MELO3C019875.2 Cucumis melo HOM05D004192 ORTHO05D004917 0.0e+00 1120.1 944 64.0
Rhsim03G0109700 Rhododendron simsii HOM05D004192 ORTHO05D004917 0.0e+00 1115.5 996 61.5
FAN03G2327 Fragaria x ananassa HOM05D004192 ORTHO05D004917 0.0e+00 1115.1 934 63.9
Hund22302 Selenicereus undatus HOM05D004192 ORTHO05D004917 0.0e+00 1114.4 931 63.7
Phvul.007G105800 Phaseolus vulgaris HOM05D004192 ORTHO05D004917 0.0e+00 1112.8 928 63.4
Peaxi162Scf00398g00058 Petunia axillaris HOM05D004192 ORTHO05D004917 0.0e+00 1109.7 953 62.2
Sed0026233 Sechium edule HOM05D004192 ORTHO05D004917 0.0e+00 1109.7 953 62.5
MSTRG.8112 Avicennia marina HOM05D004192 ORTHO05D004917 0.0e+00 1106.3 938 63.4
TAR623G0905 Trochodendron aralioides HOM05D004192 ORTHO05D004917 0.0e+00 1103.2 946 62.5
arahy.Tifrunner.gnm1.ann1.CA0PQ2 Arachis hypogaea HOM05D004192 ORTHO05D004917 0.0e+00 1100.9 932 63.2
Migut.F01661 Erythranthe guttata HOM05D004192 ORTHO05D004917 0.0e+00 1100.5 938 62.8
Lalb_Chr02g0151281 Lupinus albus HOM05D004192 ORTHO05D004917 0.0e+00 1100.1 933 62.6
Glyma.10G201300 Glycine max HOM05D004192 ORTHO05D004917 0.0e+00 1095.5 931 62.3
Sp3g08830 Schrenkiella parvula HOM05D004192 ORTHO05D004917 0.0e+00 1092.8 916 62.6
AT3G10550 Arabidopsis thaliana HOM05D004192 ORTHO05D004917 0.0e+00 1090.9 925 61.8
THA.LOC104816452 Tarenaya hassleriana HOM05D004192 ORTHO05D004917 0.0e+00 1089.7 936 62.5
Solyc11g007670.3 Solanum lycopersicum HOM05D004192 ORTHO05D004917 0.0e+00 1088.6 938 61.7
Sopen11g003530 Solanum pennellii HOM05D004192 ORTHO05D004917 0.0e+00 1088.2 938 61.6
AL3G21970 Arabidopsis lyrata HOM05D004192 ORTHO05D004917 0.0e+00 1087.8 925 61.3
Thhalv10020062m.g Eutrema salsugineum HOM05D004192 ORTHO05D004917 0.0e+00 1086.6 929 61.7
CiPaw.13G035500 Carya illinoinensis HOM05D004192 ORTHO05D004917 0.0e+00 1085.9 931 62.7
Lj5g0013826 Lotus japonicus HOM05D004192 ORTHO05D004917 0.0e+00 1083.9 937 62.1
EL10Ac4g08605 Beta vulgaris HOM05D004192 ORTHO05D004917 0.0e+00 1083.2 933 60.6
Carub.0003s0979 Capsella rubella HOM05D004192 ORTHO05D004917 0.0e+00 1082.0 924 61.4
Lsat_1_v5_gn_8_23081 Lactuca sativa HOM05D004192 ORTHO05D004917 0.0e+00 1082.0 933 60.7
DCAR_019044 Daucus carota HOM05D004192 ORTHO05D004917 0.0e+00 1079.7 935 61.4
VMungo0720G1942 Vigna mungo HOM05D004192 ORTHO05D004917 0.0e+00 1079.3 931 61.5
Lalb_Chr21g0313171 Lupinus albus HOM05D004192 ORTHO05D004917 3.7e-311 1071.6 925 62.5
ECA233G2766 Erigeron canadensis HOM05D004192 ORTHO05D004917 1.2e-309 1066.6 935 60.3
Sc20g0001360 Simmondsia chinensis HOM05D004192 ORTHO05D004917 1.2e-309 1066.6 919 61.8
Nn2g13965 Nelumbo nucifera HOM05D004192 ORTHO05D004917 2.8e-309 1065.4 940 61.1
THA.LOC104823194 Tarenaya hassleriana HOM05D004192 ORTHO05D004917 2.8e-309 1065.4 931 60.8
GSVIVG01034690001 Vitis vinifera HOM05D004192 ORTHO05D004917 2.8e-309 1065.4 837 67.4
HanXRQChr12g0368431 Helianthus annuus HOM05D004192 ORTHO05D004917 6.8e-308 1060.8 939 60.5
Lj3A933G36 Lonicera japonica HOM05D004192 ORTHO05D004917 8.9e-308 1060.4 941 61.8
Psat6g175320 Pisum sativum HOM05D004192 ORTHO05D004917 2.0e-307 1059.3 931 61.4
HanXRQChr08g0218151 Helianthus annuus HOM05D004192 ORTHO05D004917 5.8e-307 1057.7 932 59.5
SGA_v2.0_scaffold62G21320 Striga asiatica HOM05D004192 ORTHO05D004917 9.8e-307 1057.0 989 58.8
Ca_10484_v3 Cicer arietinum L. HOM05D004192 ORTHO05D004917 8.3e-306 1053.9 932 60.9
Aqoxy1G00968 Aquilegia oxysepala HOM05D004192 ORTHO05D004917 2.0e-304 1049.3 930 60.8
PSO339G1524 Papaver somniferum HOM05D004192 ORTHO05D004917 1.7e-303 1046.2 943 60.3
Sed0024945 Sechium edule HOM05D004192 ORTHO05D004917 3.0e-303 1045.4 842 65.2
PSO384G3766 Papaver somniferum HOM05D004192 ORTHO05D004917 6.6e-303 1044.3 952 59.9
BcaNung05805 Brassica carinata HOM05D004192 ORTHO05D004917 8.6e-303 1043.9 916 60.0
BolC1t05384H Brassica oleracea HOM05D004192 ORTHO05D004917 8.6e-303 1043.9 916 60.0
Lj2C27G6 Lonicera japonica HOM05D004192 ORTHO05D004917 2.8e-301 1038.9 977 59.1
CSS0018543 Camellia sinensis var. sinensis HOM05D004192 ORTHO05D004917 4.7e-301 1038.1 809 66.6
ATR0820G117 Amborella trichopoda HOM05D004192 ORTHO05D004917 8.1e-301 1037.3 921 60.9
Aa31LG3G3400 Aethionema arabicum HOM05D004192 ORTHO05D004917 1.1e-300 1036.9 933 59.5
Thhalv10012689m.g Eutrema salsugineum HOM05D004192 ORTHO05D004917 1.5e-299 1033.1 932 59.3
Glyma.20G189100 Glycine max HOM05D004192 ORTHO05D004917 2.0e-299 1032.7 949 59.0
Haze_02630 Corylus avellana HOM05D004192 ORTHO05D004917 8.3e-298 1027.3 1087 54.9
BraA01t04242Z Brassica rapa HOM05D004192 ORTHO05D004917 3.2e-297 1025.4 889 61.1
TPR.G2517 Trifolium pratense HOM05D004192 ORTHO05D004917 1.9e-294 1016.1 1014 56.8
Ah.04g163610 Amaranthus hybridus HOM05D004192 ORTHO05D004917 4.3e-294 1015.0 930 58.9
Atru.chr12.952 Acer truncatum HOM05D004192 ORTHO05D004917 9.5e-294 1013.8 783 67.4
AL6G14190 Arabidopsis lyrata HOM05D004192 ORTHO05D004917 3.4e-291 1005.4 925 58.3
Nitab4.5_0000593g0020 Nicotiana tabacum HOM05D004192 ORTHO05D004917 1.1e-289 1000.3 945 57.7
CAN.G135.58 Capsicum annuum HOM05D004192 ORTHO05D004917 2.4e-289 999.2 814 63.3
C02p01980 Brassica napus HOM05D004192 ORTHO05D004917 9.2e-289 997.3 929 57.9
BolC9t59967H Brassica oleracea HOM05D004192 ORTHO05D004917 1.2e-288 996.9 932 57.6
AT5G04540 Arabidopsis thaliana HOM05D004192 ORTHO05D004917 2.7e-288 995.7 925 57.3
HPP92_001744 Vanilla planifolia HOM05D004192 ORTHO05D004917 1.0e-287 993.8 914 57.5
BraA02t04817Z Brassica rapa HOM05D004192 ORTHO05D004917 2.3e-287 992.6 911 58.5
Sp6g38220 Schrenkiella parvula HOM05D004192 ORTHO05D004917 3.9e-287 991.9 931 58.2
A10p31560 Brassica napus HOM05D004192 ORTHO05D004917 6.6e-287 991.1 933 57.6
BraA10t45202Z Brassica rapa HOM05D004192 ORTHO05D004917 6.6e-287 991.1 933 57.6
BolC2t06155H Brassica oleracea HOM05D004192 ORTHO05D004917 3.3e-286 988.8 929 57.6
Carub.0006s0348 Capsella rubella HOM05D004192 ORTHO05D004917 1.4e-284 983.4 924 57.4
HanXRQChr14g0456301 Helianthus annuus HOM05D004192 ORTHO05D004917 1.4e-284 983.4 943 57.2
BcaB04g21235 Brassica carinata HOM05D004192 ORTHO05D004917 3.9e-271 938.7 790 61.3
BcaC06g32164 Brassica carinata HOM05D004192 ORTHO05D004917 3.7e-269 932.2 822 59.7
Aa31LG11G5410 Aethionema arabicum HOM05D004192 ORTHO05D004917 3.4e-267 925.6 924 55.3
SEGI_16113 Sequoiadendron giganteum HOM05D004192 ORTHO05D004917 6.7e-263 911.4 931 54.5
PGSC0003DMG402027320 Solanum tuberosum HOM05D004192 ORTHO05D004917 4.9e-258 895.2 802 59.5
CDE06G2538 Ceratophyllum demersum HOM05D004192 ORTHO05D004917 8.4e-258 894.4 800 59.8
ECA238G3394 Erigeron canadensis HOM05D004192 ORTHO05D004917 4.8e-253 878.6 870 54.6
AUR62041537 Chenopodium quinoa HOM05D004192 ORTHO05D004917 2.9e-250 869.4 936 53.2
AUR62041535 Chenopodium quinoa HOM05D004192 ORTHO05D004917 1.4e-249 867.1 935 53.3
Actinidia18569 Actinidia chinensis HOM05D004192 ORTHO05D004917 5.5e-241 838.6 777 59.3
C09p72230 Brassica napus HOM05D004192 ORTHO05D004917 3.3e-230 802.7 758 57.0
CiPaw.14G028000 Carya illinoinensis HOM05D004192 ORTHO05D004917 5.9e-227 792.0 616 67.5
unitig_736.g22321 Utricularia gibba HOM05D004192 ORTHO05D004917 9.1e-220 768.1 924 48.8
AagrBONN_evm.TU.Sc2ySwM_368.2559 Anthoceros agrestis HOM05D004192 ORTHO05D004917 8.8e-215 751.5 944 45.6
Lsat_1_v5_gn_2_102840 Lactuca sativa HOM05D004192 ORTHO05D004917 3.7e-205 719.5 847 50.2
Medtr1g492590 Medicago truncatula HOM05D004192 ORTHO05D004917 1.0e-194 684.9 596 61.6
Pp3c18_20050 Physcomitrium patens HOM05D004192 ORTHO05D004917 6.6e-194 682.2 974 42.2
Pp3c22_15020 Physcomitrium patens HOM05D004192 ORTHO05D004917 1.2e-192 677.9 947 44.0
CARHR085080 Cardamine hirsuta HOM05D004192 ORTHO05D004917 4.3e-185 652.9 538 64.7
Mapoly0087s0031 Marchantia polymorpha HOM05D004192 ORTHO05D004917 3.1e-183 646.7 941 42.5
A01p41680 Brassica napus HOM05D004192 ORTHO05D004917 2.1e-168 597.4 445 69.4
Nitab4.5_0003408g0020 Nicotiana tabacum HOM05D004192 ORTHO05D004917 4.9e-165 586.3 838 43.4
Os08g0556700 Oryza sativa ssp. japonica HOM05D004192 ORTHO05D004917 1.3e-154 551.6 605 51.6
vmacro07217 Vaccinium macrocarpon HOM05D004192 ORTHO05D004917 8.7e-154 548.9 513 60.0
SHI21315 Sapria himalayana HOM05D004192 ORTHO05D004917 1.9e-153 547.7 532 55.6
SMO367G0225 Selaginella moellendorffii HOM05D004192 ORTHO05D004917 4.0e-151 540.0 894 39.6
Ciclev10031728m.g Citrus clementina HOM05D004192 ORTHO05D004917 7.6e-150 535.8 408 68.6
Hma1.2p1_0492F.1_g164750 Hydrangea macrophylla HOM05D004192 ORTHO05D004917 9.6e-145 518.8 404 66.8
MBI17_g20218_MAGBIO Magnolia biondii HOM05D004192 ORTHO05D004917 4.8e-144 516.5 518 55.6
CARHR208730 Cardamine hirsuta HOM05D004192 ORTHO05D004917 6.2e-144 516.2 522 54.8
Oeu026557.1 Olea europaea HOM05D004192 ORTHO05D004917 2.2e-141 507.7 742 43.8
Cpa.g.sc942.1 Carica papaya HOM05D004192 ORTHO05D004917 2.9e-117 427.6 310 69.4
arahy.Tifrunner.gnm1.ann1.VIL3TT Arachis hypogaea HOM05D004192 ORTHO05D004917 9.4e-116 422.5 305 70.5
Zm00001eb039660 Zea mays HOM05D004192 ORTHO05D004917 2.7e-115 421.0 524 47.1
CARHR085070 Cardamine hirsuta HOM05D004192 ORTHO05D004917 8.0e-115 419.5 391 55.2
Medtr1g092570 Medicago truncatula HOM05D004192 ORTHO05D004917 5.3e-111 406.8 311 67.8
AL3G45840 Arabidopsis lyrata HOM05D004192 ORTHO05D004917 4.5e-110 403.7 428 54.0
MBI17_g20211_MAGBIO Magnolia biondii HOM05D004192 ORTHO05D004917 3.8e-109 400.6 376 58.5
SHI21312 Sapria himalayana HOM05D004192 ORTHO05D004917 9.4e-108 396.0 319 63.9
Hma1.2p1_0492F.1_g164740 Hydrangea macrophylla HOM05D004192 ORTHO05D004917 4.3e-84 317.4 204 74.0
Oeu026556.1 Olea europaea HOM05D004192 ORTHO05D004917 9.8e-81 306.2 244 63.5
HanXRQChr14g0456291 Helianthus annuus HOM05D004192 ORTHO05D004917 3.7e-80 304.3 302 55.6
Psat0s4326g0040 Pisum sativum HOM05D004192 ORTHO05D004917 9.5e-68 263.1 176 71.0
vmacro07216 Vaccinium macrocarpon HOM05D004192 ORTHO05D004917 1.0e-61 243.0 204 63.7
Cpa.g.c33984 Carica papaya HOM05D004192 ORTHO05D004917 2.5e-60 238.4 148 79.1
Zm00001eb215930 Zea mays HOM05D004192 ORTHO05D004917 3.2e-55 221.5 199 56.3
Psat0s3097g0040 Pisum sativum HOM05D004192 ORTHO05D004917 1.6e-46 192.6 150 66.0
QL04p040652 Quercus lobata HOM05D004192 ORTHO05D004917 2.1e-43 182.2 274 45.6
Cfa026029 Carpinus fangiana HOM05D004192 ORTHO05D004917 2.7e-38 165.2 530 28.7
PGSC0003DMG401027320 Solanum tuberosum HOM05D004192 ORTHO05D004917 3.0e-37 161.8 159 58.5
TAR371G0071 Trochodendron aralioides HOM05D004192 ORTHO05D004917 1.6e-30 139.4 129 61.2
QL04p040713 Quercus lobata HOM05D004192 ORTHO05D004917 1.5e-28 132.9 126 63.5
SHI21313 Sapria himalayana HOM05D004192 ORTHO05D004917 4.8e-27 127.9 83 79.5
Actinidia18568 Actinidia chinensis HOM05D004192 ORTHO05D004917 1.5e-25 122.9 109 58.7
BcaB02g10205 Brassica carinata HOM05D004192 ORTHO05D004917 2.0e-25 122.5 133 52.6
Oeu021819.1 Olea europaea HOM05D004192 ORTHO05D004917 1.6e-19 102.8 75 70.7
RcHm_v2.0_Chr4g0433221 Rosa chinensis HOM05D004192 ORTHO05D004917 2.6e-17 95.5 67 73.1
RcHm_v2.0_Chr0c16g0499861 Rosa chinensis HOM05D004192 ORTHO05D004917 1.9e-15 89.4 60 75.0
Rhsim01G0150300 Rhododendron simsii HOM05D004192 ORTHO05D004917 2.3e-13 82.4 99 43.4
Nitab4.5_0003408g0010 Nicotiana tabacum HOM05D004192 ORTHO05D004917 2.0e-09 69.3 84 47.6
RcHm_v2.0_Chr2g0132831 Rosa chinensis HOM05D004192 ORTHO05D004917 1.0e-08 67.0 57 61.4
Lsat_1_v5_gn_6_80241 Lactuca sativa HOM05D004192 ORTHO05D004917 2.2e-08 65.9 49 69.4
AL4G18520 Arabidopsis lyrata HOM05D003414 ORTHO05D003913 7.2e-07 60.8 32 81.2
AL4G19510 Arabidopsis lyrata HOM05D002764 ORTHO05D002960 7.2e-07 60.8 32 81.2
AL5G23210 Arabidopsis lyrata HOM05D063572 ORTHO05D002960 7.2e-07 60.8 32 81.2
TAR633G0581 Trochodendron aralioides HOM05D004192 ORTHO05D004917 7.9e-06 57.4 59 47.5


User provided reference genes

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